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Background Idiopathic pulmonary fibrosis (IPF) is a progressive disease with a five-year survival rate of less than 40%. There is significant variability in survival time among IPF patients, but the underlying mechanisms for this are not clear yet. Methods and results We collected single-cell RNA sequence data of 13,223 epithelial cells taken from 32 IPF patients and bulk RNA sequence data from 456 IPF patients in GEO. Based on unsupervised clustering analysis at the single-cell level and deconvolution algorithm at bulk RNA sequence data, we discovered a special alveolar type 2 cell subtype characterized by high expression of CCL20 (referred to as ATII-CCL20), and found that IPF patients with a higher proportion of ATII-CCL20 had worse prognoses. Furthermore, we uncovered the upregulation of immune cell infiltration and metabolic functions in IPF patients with a higher proportion of ATII-CCL20. Finally, the comprehensive decision tree and nomogram were constructed to optimize the risk stratification of IPF patients and provide a reference for accurate prognosis evaluation. Conclusions Our study by integrating single-cell and bulk RNA sequence data from IPF patients identified a special subtype of ATII cells, ATII-CCL20, which was found to be a risk cell subtype associated with poor prognosis in IPF patients. More importantly, the ATII-CCL20 cell subtype was linked with metabolic functions and immune infiltration.

Terahertz waves have great potential for applications in security imaging, wireless communication, and other fields, but efficient and tunable terahertz-absorbing devices are the key to their technological development. In this paper, a tunable terahertz metamaterial based on graphene and vanadium dioxide materials is proposed. When the vanadium dioxide conductivity is 1.6 × 105 S/m and the Fermi energy level of graphene is 0.75 eV, the metamaterial exhibits high absorptivity exceeding 90% in ultra-broadband of 2.05–14.03 THz; when the Fermi energy level of graphene is adjusted to 0 eV, the high absorption wavelength range narrowed to 4.07–13.80 THz; when the vanadium dioxide conductivity is adjusted to 200 S/m, the metamaterial exhibits high transmissivity exceeding 80% in the wavelength range up to 15 THz. Additionally, the metamaterial is insensitive to polarization angles and incident angles, allowing it to adapt to changes in the angle of incidence and polarization in practical applications. The metamaterial has potential applications in optical switches, electromagnetic wave stealth devices, and filtering devices.

Monascus produces various bioactive compounds, including monacolin K (MK), γ-aminobutyric acid (GABA), and Monascus pigments (MPs). Studies have shown that overexpressing genes within the MK biosynthetic cluster significantly enhances MK production. Additionally, MK synthesis in Monascus is regulated by other genes. Based on previous transcriptomic analyses conducted in our laboratory, a significant positive correlation was identified between the expression level of the GAD gene and MK production in M. pilosus. In this study, the GAD gene from M. pilosus was selected for overexpression, and a series of engineered M. pilosus strains were constructed. Among the 20 PCR-positive transformants obtained, 13 strains exhibited MK production increases of 12.84–52.50% compared to the parental strain, while 17 strains showed GABA production increases of 17.47–134.14%. To elucidate the molecular mechanisms underlying the enhanced production of MK and GABA, multi-omics analyses were performed. The results indicated that GAD overexpression likely promotes MK and GABA synthesis in M. pilosus by regulating key genes (e.g., HPD, HGD, and FAH) and metabolites (e.g., α-D-ribose-1-phosphate, β-alanine) involved in pathways such as tyrosine metabolism, phenylalanine metabolism, the pentose phosphate pathway, propanoate metabolism, and β-alanine metabolism. These findings provide theoretical insights into the regulatory mechanisms of MK and GABA biosynthesis in Monascus and suggest potential strategies for enhancing their production.

Hongqujiu, one of the three principal varieties of yellow wine, is a traditional fermented beverage originating from China that employs Hongqu as the fermentation agent. In this study, an untargeted metabolomics approach based on gas chromatography–mass spectrometry (GC-MS) and liquid chromatography–mass spectrometry (LC-MS) was applied to systematically analyze the volatile compounds (VOCs) and non-volatile compounds (NVCs) in Hongqujiu across different aging years for the first time. The analysis identified a total of 262 VOCs and 2564 NVCs in samples of Hongqujiu aged for six distinct years. Based on metabolic differences, the samples were categorized into two groups: the low-year group (5-year, 6-year) and the high-year group (8-year, 10-year, 15-year, 20-year). Nineteen VOCs (e.g., 4-amino-butyric acid and diethanolamine) and thirty NVCs (e.g., palmitoylethanolamide and erinacine D) were identified as key differential metabolites distinguishing the low-year group from the high-year group. The higher-year group is enriched with a variety of substances with different flavors or biological activities, such as sugar derivatives, amino acids and their complexes, organic acids and their intermediate metabolites, steroids and terpenoid compounds, lipids and their derivatives, nitrogen-containing heterocycles, and aromatic compounds. The accumulation of these substances not only shapes the unique and rich flavor characteristics of aged red rice wine (such as the caramel aroma and umami peptide flavor), but also endows red rice wine with potential health benefits due to the physiological regulatory functions of some active ingredients. This study contributes to a deeper understanding of the composition and dynamic variations in metabolites in Hongqujiu, offering a scientific foundation for identifying aged Hongqujiu and conducting further research to enhance its quality.

Improving solar availability in urban blocks is vital to promoting energy conservation and emissions reduction. However, there are very few studies on the impact of block morphology on solar energy availability in high-density cities based on the particularities of climate and solar energy resources in severe cold regions at higher latitudes. This study took 434 block models generated through seven orientation conditions of 62 residential blocks in Harbin, China, as its research object. Through numerical simulations and statistical analysis, it revealed the quantitative relationship between block morphology and the availability of active photovoltaic and solar thermal collector technologies and passive thermal heating technologies. The results show that active solar technology has the highest availability in multi-story enclosed residential blocks, and passive thermal heating has the highest availability in the multi-high-level mixed-row type. The south façade of the building has the greatest active and passive solar availability. The overall active solar availability of the residential block is significantly negatively correlated with the mean building height, floor area ratio, and volume area ratio; it is significantly positively correlated with site coverage and the standard deviation of the building height. Controlling the block’s orientation between 15° south by west and 15° south by east can increase the active solar availability of the façade. This study provides a reference and evaluation basis for the sustainable planning and design of high-density cities in severely cold regions.

Methicillin-resistant (MRSP) is an emerging zoonotic pathogen that causes a variety of clinical diseases in mammalian hosts. While it frequently causes infections in dogs and other domestic animals, accumulating evidence indicates that zoonotic spillover and cross-species transmission events favour local and invasive infections in humans. However, immuno-evasive maneuvers that shape pathogenicity and survival in diseased hosts remain enigmatic. Powered by multi-tech imaging and a mouse model of bloodstream infection, we illustrate that adopted a virulence mechanism from predominant bacterial pathogens to surmount neutrophilic responses and neutrophil extracellular trap (NET)-mediated killing. Specifically, release of NucB, a thermostable nuclease, helps MRSP coping with the antimicrobial and pathogen-immobilizing properties of NETs and even promotes intra-neutrophil survival upon phagocytosis, thereby contributing to pathogenesis and persistence within hepatic abscesses. Combined with the analysis of genetically distinct human clinical isolates, all of which display nuclease activity and features of resistance to NETosis-induced killing, our data highlight how zoonotic staphylococci overcome innate immune responses and concurrently uncover a mechanism that may exacerbate animal-borne MRSP infections in humans.

Monascus species are capable of producing various active metabolites, including monacolin K (MK) and pigments. Studies have shown that the overexpression of the mok I gene from the MK synthesis gene cluster in Monascus species can significantly increase MK production; however, the molecular mechanism has not yet been fully elucidated. Therefore, this study focused on the mok I gene of Monascus pilosus to construct overexpression strains of the mok I gene, resulting in high-yield MK production. Sixteen positive transformants were obtained, seven of which produced 9.63% to 41.39% more MK than the original strain, with no citrinin detected in any of the transformants. The qRT-PCR results revealed that the expression levels of mok I in the transformed strains TI-13, TI-24, and TI-25 increased by more than 50% compared to the original strain at various fermentation times, with the highest increase being 10.9-fold. Furthermore, multi-omics techniques were used to analyze the molecular mechanisms underlying enhanced MK production in transformed strains. The results indicated that mok I overexpression may enhance MK synthesis in M. pilosus by regulating the expression of key genes (such as MAO, HPD, ACX, and PLC) and the synthesis levels of key metabolites (such as delta-tocopherol and alpha-linolenic acid) in pathways linked to the biosynthesis of cofactors, the biosynthesis of unsaturated fatty acids, tyrosine metabolism, ubiquinone and other terpenoid-quinone biosynthesis, alpha-linolenic acid metabolism, and glycerophospholipid metabolism. These findings provide a theoretical basis for further study of the metabolic regulation of MK in Monascus species and for effectively enhancing their MK production.

A novel composite ceramic with low densification temperature was fabricated using the conventional solid-state method. The XRD and Rietveld refinement results indicated that the two phases of CaB2O4 and CaSiO3 can coexist in all compositions. Furthermore, a phase transition of CaSiO3 ceramic from α-phase to β-phase was observed. A dense ceramic with excellent microwave dielectric properties (εr~6.4, Q × f~75,600 GHz, and a negative τf~26.9 ppm/°C) was obtained at x = 0.5 when sintered at 925 °C at the frequency of 14.2 GHz. A good chemical compatibility between the composite ceramic and Ag electrode was improved by elemental mapping results. A patch antenna was fabricated based on the simulated result. All results indicated that the 0.5 CaB2O4 + 0.5 CaSiO3 ceramic has large application potential in the LTCC field.

Understanding the dynamics of deep-sea hydrothermal plumes and the depositional pattern of hydrothermal particles is essential for tracking the submarine hydrothermal venting site, prospecting polymetallic sulfide resources, as well as deciphering biogeochemistry cycling of marine elements. In this paper, a numerical model of the deep-sea hydrothermal plume is established based on the topography and long-term current monitoring data of the Wocan-1 hydrothermal field (WHF-1), Carlsberg Ridge, Northwest Indian Ocean. The model allows for a reconstruction of the hydrothermal plume in terms of its structure, velocity field, and temperature field. The relationships between the maximum height of the rising plume and the background current velocity, and between the height of the neutral-buoyancy layer and the background current velocity are established, respectively. The transport patterns of the hydrothermal particles and their controlling factors are revealed. Using hydrothermal particles with a density of ~5000 kg/m3 (i.e., pyrite grains) as an example, it is found that pyrite larger than 1 mm can only be found near the venting site. Those in the size 0.3–0.5 mm can only be found within 137–240 m from the venting site, while those smaller than 0.2 mm can be transported over long distances of more than 1 km. Using the vertical temperature profiling data of WHF-1 obtained during the Jiaolong submersible diving cruise in March 2017, we reconstruct the past current velocity of 10 cm/s, similar to the current data retrieved from the observational mooring system. Our model and the findings contribute to a better understanding of the hydrothermal system of WHF-1, and provide useful information for tracing the hydrothermal vents, prospecting the submarine polymetallic sulfide resources, designing the long-term observation networks, and relevant studies on element cycling and energy budget.

In this paper, we conduct a comparative study on the mineralogy and geochemistry of metalliferous sediment collected near the active hydrothermal site (Wocan-1) and inactive hydrothermal site (Wocan-2) from Wocan Hydrothermal Field, on the Carlsberg Ridge (CR), northwest Indian Ocean. We aim to understand the spatial variations in the primary and post-depositional conditions and the intensity of hydrothermal circulations in the Wocan hydrothermal systems. Sediment samples were collected from six stations which includes TVG-07, TVG-08 (Wocan-1), TVG-05, TVG-10 (Wocan-2), TVG-12 and TVG-13 (ridge flanks). The mineralogical investigations show that sediment samples from Wocan-1 and Wocan-2 are composed of chalcopyrite, pyrite, sphalerite, barite, gypsum, amorphous silica, altered volcanic glass, Fe-oxides, and hydroxides. The ridge flank sediments are dominated by biogenic calcite and foraminifera assemblages. The bulk sediment samples of Wocan-1 have an elevated Fe/Mn ratio (up to ~1545), with lower U contents (<7.4 ppm) and U/Fe ratio (<~1.8 × 10−5). The sulfide separates (chalcopyrite, pyrite, and sphalerite) are enriched in Se, Co, As, Sb, and Pb. The calculated sphalerite precipitation temperature (Sph.PT) yields ~278 °C. The sulfur isotope (δ34S) analysis returned a light value of 3.0–3.6‰. The bulk sediment samples of Wocan-2 have a lower Fe/Mn ratio (<~523), with high U contents (up to 19.6 ppm) and U/Fe ratio (up to ~6.2 × 10−5). The sulfide separates are enriched in Zn, Cu, Tl, and Sn. The calculated Sph.PT is ~233 °C. The δ34S returned significant values of 4.1–4.3‰ and 6.4–8.7‰ in stations TVG-10 and TVG-05, respectively. The geochemical signatures (e.g., Fe/Mn and U/Fe ratio, mineral chemistry of sulfides separates, and S-isotopes and Sph.PT) suggest that sediment samples from Wocan-1 are located near intermediate–high temperature hydrothermal discharge environments. Additionally, relatively low δ34S values exhibit a lower proportion (less than 20%) of seawater-derived components. The geochemical signatures suggest that sediment samples from Wocan-2 has undergone moderate–extensive oxidation and secondary alterations by seawater in a low–intermediate temperature hydrothermal environments. Additionally, the significant δ34S values of station TVG-05 exhibit a higher estimated proportion (up to 41%) of seawater-derived components. Our results showed pervasive hydrothermal contributions into station TVG-08 relative to TVG-07, it further showed the increased process of seafloor weathering at TVG-05 relative to TVG-10.