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Soil microorganisms could affect the quality of tobacco leaves, however, little is known about the association of tobacco chemical components and soil fungal communities. In the present study, the relationship between soil fungi and tobacco quality based on chemical components in Bijie was investigated. The results showed that the total harmony scores (THS) of the analyzed tobacco leaves ranged from 46.55 ± 3.5 to 91.55 ± 2.25. Analyses of chemical components revealed that high contents of nicotine (≥ 1.06%) and sugar (total sugar: ≥ 22.96%, reducing sugar: ≥ 19.62%), as well as low potassium level (≤ 2.68%) were the main factors limiting the quality of flue-cured tobacco leaves. Pearson correlation analysis indicated that soil nitrate, available potassium/phosphorous, and organic matter significantly correlated with tobacco nicotine, potassium, and chloride levels ( p  < 0.05). Besides, the analysis of alpha- and beta-diversity of soil fungal communities implied that fungal structure rather than the richness affected the chemical quality of tobacco. In detail, the relative abundance of Humicola olivacea species in soils was positively correlated with the THS of tobaccos (r = 0.52, p  < 0.05). Moreover, the species including Mortierella alpina , Mortierella hyalina , Tausonia pullulan , and Humicola olivacea were negatively correlated with tobacco sugar (r ≤  − 0.45, p  < 0.05) while, Codinaea acaciae and Saitozyma podzolica species were negatively correlated with tobacco nicotine (r ≤  − 0.51, p  < 0.05). The present study provides a preliminary basis for utilizing fungal species in soils to improve the chemical quality of tobacco in the studied area.

Background Microbes isolated from hyperaccumulating plants have been reported to be effective in achieving higher phytoextraction efficiency. The plant growth-promoting bacteria (PGPB) SaMR12 from the cadmium (Cd)/zinc hyperaccumulator Sedum alfredii Hance could promote the growth of a non-host plant, oilseed rape, under Cd stress. However, the effect of SaMR12 on Brasscia juncea antioxidative response under Cd exposure was still unclear. Results A hydroponic experiment was conducted to study the effects of Sphingomonas SaMR12 on its non-host plant Brassica juncea (L.) Czern. under four different Cd treatments. The results showed that SaMR12 could colonize and aggregate in the roots and then move to the shoots. SaMR12 inoculation promoted plant growth by up to 71% in aboveground biomass and 81% in root biomass over that of the non-inoculated plants. SaMR12-inoculated plants significantly enhanced root Cd accumulation in the 10 and 20 μM Cd treatments, with 1.72- and 0.86-fold increases, respectively, over that of the non-inoculated plants. SaMR12 inoculation not only decreased shoot hydrogen peroxide (H 2 O 2 ) content by up to 38% and malondialdehyde (MDA) content by up to 60% but also reduced proline content by 7–30% in shoots and 17–32% in roots compared to the levels in non-inoculated plants. Additionally, SaMR12 inoculation promoted the activities of superoxide dismutase (SOD), peroxidase (POD), catalase (CAT), and ascorbate peroxidase (APX) and facilitated the relative gene expression levels of dehydroascorbate reductase ( DHAR ) and glutathione reductase ( GR ) involved in the glutathione (GSH)-ascorbic acid (AsA) cycle. Conclusions The results demonstrated that, under Cd stress, SaMR12 inoculation could activate the antioxidative response of B. juncea by decreasing the concentrations of H 2 O 2 , MDA and proline, increasing the activities of antioxidative enzymes, and regulating the GSH-AsA cycle. These results provide a theoretical foundation for the potential application of hyperaccumulator endophytic bacteria as remediating agents to improve heavy metal tolerance within non-host plant species, which could further improve phytoextraction efficiency. Graphical abstract

Background Although numerous endophytic bacteria have been isolated and characterized from cadmium (Cd) hyperaccumulators, the contribution and potential application of the core endophytic microbiomes on facilitating phytoremediation were still lack of intensive recognition. Therefore, a 2-year field sampling in different location were firstly conducted to identify the unique core microbiome in Cd hyperaccumulators, among which the representative cultivable bacteria of different genera were then selected to construct synthetic communities (SynComs). Finally, the effects and mechanisms of the optimized SynCom in regulating Cd accumulation in different ecotypes of Sedum alfredii were studied to declare the potential application of the bacterial agents based on core microbiome. Results Through an innovative network analysis workflow, 97 core bacterial taxa unique to hyperaccumulator Sedum was identified based on a 2-year field 16S rRNA sequencing data. A SynCom comprising 13 selected strains belonging to 6 different genera was then constructed. Under the combined selection pressure of the plant and Cd contamination, Alcaligenes sp. exhibited antagonistic relationships with other genera and plant Cd concentration. Five representative strains of the other five genera were further conducted genome resequencing and developed six SynComs, whose effects on Cd phytoremediation were compared with single strains by hydroponic experiments. The results showed that SynCom-NS comprising four strains (including Leifsonia shinshuensis , Novosphingobium lindaniclasticum , Ochrobactrum anthropi , and Pseudomonas izuensis ) had the greatest potential to enhance Cd phytoremediation. After inoculation with SynCom-NS, genes related to Cd transport, antioxidative defense, and phytohormone signaling pathways were significantly upregulated in both ecotypes of S. alfredii , so as to promote plant growth, Cd uptake, and translocation. Conclusion In this study, we designed an innovative network analysis workflow to identify the core endophytic microbiome in hyperaccumulator. Based on the cultivable core bacteria, an optimized SynCom-NS was constructed and verified to have great potential in enhancing phytoremediation. This work not only provided a framework for identifying core microbiomes associated with specific features but also paved the way for the construction of functional synthetic communities derived from core microbiomes to develop high efficient agricultural agents. 5KavnCJpVp3k2g6uQCMsTe Video Abstract

Due to the increasing concerns of heavy metal contamination in greenhouse soil, the safe production of vegetables, especially leafy vegetables, is largely limited. In this study, the cadmium (Cd) concentration and major nutritional qualities of 23 main celery cultivars from China were compared in a greenhouse experiment. Large genotypic differences in biomass, cadmium accumulation and nutrition traits were observed. The biomass of cultivars Hongqin (HQ), Jialifuniyadiwangxiqin (JZ), Jinhuangqincai (JH) and Shanqincai (SQ) was significantly higher than that of the others. The Cd concentration in the edible part ranged from 0.53 to 2.56 mg·kg −1 DW, of which SQ exhibited the lowest Cd concentration. In addition, SQ had the lowest Cd transport factor (TF) and bioconcentration factor (BCF), followed by Liangfengyuqin (LF). Simultaneously, both genotypes had a relatively higher chlorophyll content and vitamin C concentration and lower cellulose content. Therefore, the two genotypes SQ and LF were selected as promising candidates for growth in a moderately Cd-contaminated greenhouse to achieve safe production. Further correlation analysis and redundancy analysis showed that the Cd concentration in the edible part was positively correlated with the cellulose content but negatively correlated with the vitamin C concentration. The results of celery variety screening provide a safe production strategy for moderately polluted greenhouse vegetable soils. Graphical abstract

With the rapid development of industry, chromium (Cr) pollutants accumulate constantly in the soil, causing severe soil Cr pollution problems. Farmland Cr pollution hurts the safety of agricultural production and indirectly affects human health and safety. However, the current situation of Cr pollution in farmland soil and crops has not been detailed enough. In this study, the evaluation of Cr potential risk in soil-crop systems was conducted in a rural area that was affected by industry and historic sewage irrigation. Ten different crops and rhizosphere soils were sampled from four fields. The results showed that Cr contents in farmland soil exceeded the national standard threshold in China (>21.85%), and the Cr content in edible parts of some agricultural products exceeded that too. According to the PCA and relation analysis, the Cr accumulation in edible parts showed a significant correlation with soil Cr contents and available potassium contents. Except for water spinach, the target hazard quotient (THQ) of the other crops was lower than 1.0 but the carcinogenic health risks all exceeded the limits. The carcinogenic risks (CR) of different types of crops are food crops > legume crops > leafy vegetable crops and root-tuber crops. A comprehensive assessment revealed that planting water spinach in this area had the highest potential risk of Cr pollution. This study provided a scientific and reliable approach by integrating soil environmental quality and agricultural product security, which helps evaluate the potential risk of Cr in arable land more efficiently and lays technical guidelines for local agricultural production safety.

Chromium (Cr) is a major pollutant affecting the environment and human health and microbial remediation is considered to be the most promising technology for the restoration of the heavily metal-polluted soil. However, the difference between rhizosphere and endophytic bacteria on the potential of crop safety production in Cr-contaminated farmland is not clearly elucidated. Therefore, eight Cr-tolerant endophytic strains of three species: Serratia (SR-1~2), Lysinebacillus (LB-1~5) and Pseudomonas (PA-1) were isolated from rice and maize. Additionally, one Cr-tolerant strain of Alcaligenes faecalis (AF-1) was isolated from the rhizosphere of maize. A randomized group pot experiment with heavily Cr-contaminated (a total Cr concentration of 1020.18 mg kg−1) paddy clay soil was conducted and the effects of different bacteria on plant growth, absorption and accumulation of Cr in lettuce (Lactuca sativa var. Hort) were compared. The results show that: (i) the addition of SR-2, PA-1 and LB-5 could promote the accumulation of plant fresh weight by 10.3%, 13.5% and 14.2%, respectively; (ii) most of the bacteria could significantly increase the activities of rhizosphere soil catalase and sucrase, among which LB-1 promotes catalase activity by 224.60% and PA-1 increases sucrase activity by 247%; (iii) AF-1, SR-1, LB-1, SR-2, LB-2, LB-3, LB-4 and LB-5 strains could significantly decrease shoot the Cr concentration by 19.2–83.6%. The results reveal that Cr-tolerant bacteria have good potential to reduce shoot Cr concentration at the heavily contaminated soil and endophytic bacteria have the same or even better effects than rhizosphere bacteria; this suggests that bacteria in plants are more ecological friendly than bacteria in soil, thus aiming to safely produce crops in Cr-polluted farmland and alleviate Cr contamination from the food chain.

Single or combined plant growth-promoting bacteria (PGPB) strains were widely applied as microbial agents in cadmium (Cd) phytoextraction since they could promote plant growth and facilitate Cd uptake. However, the distinct functional effects between single and combined inoculants have not yet been elucidated. In this study, a field experiment was conducted with single, double and triple inoculants to clarify their divergent impacts on plant growth, Cd uptake and accumulation at different growth stages of Brassica juncea L. by three different PGPB strains (Cupriavidus SaCR1, Burkholdria SaMR10 and Sphingomonas SaMR12). The results show that SaCR1 + SaMR10 + SaMR12 combined inoculants were more effective for growth promotion at the bud stage, flowering stage, and mature stage. Single/combined PGPB agents of SaMR12 and SaMR10 were more efficient for Cd uptake promotion. In addition, SaMR10 + SaMR12 combined the inoculants greatly facilitated Cd uptake and accumulation in shoots, and enhanced the straw Cd extraction rates by 156%. Therefore, it is concluded that the application of PGPB inoculants elevated Cd phytoextraction efficiency, and the combined inoculants were more conductive than single inoculants. These results enriched the existing understanding of PGPB agents and provided technical support for the further exploration of PGPB interacting mechanisms strains on plant growth and Cd phytoextraction, which helped establish an efficient plant–microbe combined phytoremediation system and augment the phytoextraction efficiency in Cd-contaminated farmlands.

The main purpose of applying organic or inorganic amendments is to guarantee crop safe production in heavy metal contaminated soil. However, previous studies showed that the effects of organic or inorganic composite amendments on the cadmium (Cd) concentration of lettuce ( Lactuca sativa var. ramosa Hort) were inconsistent. Accordingly, a sixty-day pot experiment was carried out to examine the impacts of the inorganic materials (lime, L and zeolite, Z), organic materials (biochar, B and compost, C), and their combination on the immobilization of Cd in soil and its uptake by lettuce. The objective was to identify the most suitable soil amendment combination that promotes safe lettuce production. The results revealed that the combined application of BC, LZC, and LBC significantly increased the plant height by 11.09–28.04% and fresh weight by 183.47–207.67%. This improvement can be attributed to enhanced soil quality, such as increased dissolved organic carbon (DOC) by 70.19–80.42%, soil respiration (SR) by 29.04–38.46%, and soil microbial carbon content (SMC) by 36.94–46.63%. Compared to inorganic fertilizers and their combination with organic amendments, organic amendments had a significant impact on reducing shoot Cd concentration by 33.93%-56.55%, while increasing the activity of catalase by 138.87–186.86%. And soil available Cd measured by diffusive gradients in thin-films (DGT-Cd) decreased 24.73–88.13% in all treatments. Correlation analysis showed that plant Cd concentration was significantly correlated with soil pH, SR, cation exchange capacity (CEC), DOC and SMC. These results demonstrated that organic amendments, especially the combination of biochar and compost, have greater potential than inorganic amendments and inorganic–organic combinations for realizing safe production of lettuce and improving soil quality in the Cd moderately contaminated acid farmland.

Intercropping crops with hyperaccumulators is a proven model for coupling crop safety production and soil heavy metal remediation. And both crop genotypes and soil properties might have great impacts on the effect of intercropping. Therefore, a greenhouse pot experiment was designed to investigate the effects of intercropping different tomato varieties with the cadmium (Cd) hyperaccumulator Sedum alfredii Hance ( S. alfredii Hance) on different soils. The results showed that intercropping promoted Cd uptake by S. alfredii Hance and reduced soil total Cd concentration. There was no significant effect of intercropping on tomato yield and Cd concentration. Different tomato varieties had different effects on tomato yield and Cd concentration. The yield of cherry tomato was 1.04 times higher than that of common large fruit tomato, while the Cd concentration in all parts was lower than that of common large fruit tomato. Different typical zonal soils had different effects on tomato production and soil remediation. And among the four studied soils, tomatoes grown on ZJ soil had the highest yields and lowest fruit Cd concentration, making them more suitable for remediation coupled with safety production. This study provided a comprehensive analysis of tomato production benefits and soil remediation effects, which could be useful as a guide in vegetable safety production coupled with soil remediation practices in the Cd-contaminated greenhouse.

Organic and inorganic mixtures can be developed as immobilizing agents that could reduce heavy metal accumulation in crops and contribute to food safety. Here, inorganic materials (lime, L; zeolite, Z; and sepiolite, S) and organic materials (biochar, B, and compost, C) were selectively mixed to produce six composite soil amendments (LZBC, LSBC, LZC, LZB, LSC, and LSB). Given the fact that LZBC showed the best performance in decreasing soil Cd availability in the incubation experiment, it was further applied in the field condition with 14 vegetables as the test crops to investigate its effects on crop safety production in polluted greenhouse. The results showed that LZBC addition elevated rhizosphere soil pH by 0.1–2.0 units and reduced soil Cd availability by 1.85–37.99%. Both the biomass and the yields of edible parts of all vegetables were improved by LZBC addition. However, LZBC addition differently affected Cd accumulation in edible parts of the experimental vegetables, with the observation that Cd contents were significantly reduced in Allium fistulosum L., Amaranthus tricolor L., and Coriandrum sativum Linn., but increased in the three species of Lactuca sativa . Further health risk assessment showed that LZBC application significantly decreased daily intake of metal (DIM), health risk index (HRI), and target hazard quotient (THQ) for Cd in Allium fistulosum L., Amaranthus tricolor L., and Coriandrum sativum Linn., whereas increased all the indexes in Lactuca sativa . Our results showed that the effect of a composite amendment on Cd accumulation in different vegetables could be divergent and species-dependent, which suggested that it is essential to conduct a pre-experiment to verify applicable species for a specific soil amendment designed for heavy metal immobilization.