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result(s) for
"Luo, Ming"
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A CNL protein in wild emmer wheat confers powdery mildew resistance
by
Zhang, Panpan
,
Yuan, Chengguo
,
Yu, Dazhao
in
Airborne microorganisms
,
Ascomycota - genetics
,
Binding sites
2020
• Powdery mildew, a fungal disease caused by Blumeria graminis f. sp. tritici (Bgt), has a serious impact on wheat production. Loss of resistance in cultivars prompts a continuing search for new sources of resistance.
• Wild emmer wheat (Triticum turgidum ssp. dicoccoides, WEW), the progenitor of both modern tetraploid and hexaploid wheats, harbors many powdery mildew resistance genes. We report here the positional cloning and functional characterization of Pm41, a powdery mildew resistance gene derived from WEW, which encodes a coiled-coil, nucleotide-binding site and leucine-rich repeat protein (CNL). Mutagenesis and stable genetic transformation confirmed the function of Pm41 against Bgt infection in wheat.
• We demonstrated that Pm41 was present at a very low frequency (1.81%) only in southern WEW populations. It was absent in other WEW populations, domesticated emmer, durum, and common wheat, suggesting that the ancestral Pm41 was restricted to its place of origin and was not incorporated into domesticated wheat.
• Our findings emphasize the importance of conservation and exploitation of the primary WEW gene pool, as a valuable resource for discovery of resistance genes for improvement of modern wheat cultivars.
Journal Article
Extracellular Vesicles from Child Gut Microbiota Enter into Bone to Preserve Bone Mass and Strength
2021
Recently, the gut microbiota (GM) has been shown to be a regulator of bone homeostasis and the mechanisms by which GM modulates bone mass are still being investigated. Here, it is found that colonization with GM from children (CGM) but not from the elderly (EGM) prevents decreases in bone mass and bone strength in conventionally raised, ovariectomy (OVX)‐induced osteoporotic mice. 16S rRNA gene sequencing reveals that CGM reverses the OVX‐induced reduction of Akkermansia muciniphila (Akk). Direct replenishment of Akk is sufficient to correct the OVX‐induced imbalanced bone metabolism and protect against osteoporosis. Mechanistic studies show that the secretion of extracellular vesicles (EVs) is required for the CGM‐ and Akk‐induced bone protective effects and these nanovesicles can enter and accumulate into bone tissues to attenuate the OVX‐induced osteoporotic phenotypes by augmenting osteogenic activity and inhibiting osteoclast formation. The study identifies that gut bacterium Akk mediates the CGM‐induced anti‐osteoporotic effects and presents a novel mechanism underlying the exchange of signals between GM and host bone. Colonization with gut microbiota from children (CGM) but not from the elderly (EGM) reverses the ovariectomy (OVX)‐induced reduction of Akkermansia muciniphila (Akk) and prevents OVX‐induced osteoporosis. Direct replenishment of Akk also induces bone benefits in OVX mice. Extracellular vesicles from CGM and Akk can enter into bone to directly attenuate the OVX‐induced osteoporotic phenotypes by augmenting osteogenesis and inhibiting osteoclastogenesis.
Journal Article
A rare single nucleotide variant in Pm5e confers powdery mildew resistance in common wheat
by
Hu, Tiezhu
,
Zhang, Panpan
,
Li, Jingting
in
Airborne microorganisms
,
Alleles
,
Association analysis
2020
• Powdery mildew poses severe threats to wheat production. The most sustainable way to control this disease is through planting resistant cultivars.
• We report the map-based cloning of the powdery mildew resistance allele Pm5e from a Chinese wheat landrace. We applied a two-step bulked segregant RNA sequencing (BSR-Seq) approach in developing tightly linked or co-segregating markers to Pm5e. The first BSR-Seq used phenotypically contrasting bulks of recombinant inbred lines (RILs) to identify Pm5e-linked markers. The second BSR-Seq utilized bulks of genetic recombinants screened from a fine-mapping population to precisely quantify the associated genomic variation in the mapping interval, and identified the Pm5e candidate genes.
• The function of Pm5e was validated by transgenic assay, loss-of-function mutants and haplotype association analysis. Pm5e encodes a nucleotide-binding domain leucine-rich-repeatcontaining (NLR) protein. A rare nonsynonymous single nucleotide variant (SNV) within the C-terminal leucine rich repeat (LRR) domain is responsible for the gain of powdery mildew resistance function of Pm5e, an allele endemic to wheat landraces of Shaanxi province of China.
• Results from this study demonstrate the value of landraces in discovering useful genes for modern wheat breeding. The key SNV associated with powdery mildew resistance will be useful for marker-assisted selection of Pm5e in wheat breeding programs.
Journal Article
Transverse parton distribution and fragmentation functions at NNLO: the gluon case
by
Luo, Ming-Xing
,
Zhu, Yu Jiao
,
Yang, Tong-Zhi
in
Distribution functions
,
Divergence
,
Effective Field Theories
2020
A
bstract
We calculate in this paper the perturbative gluon transverse momentum dependent parton distribution functions (TMDPDFs) and fragmentation functions (TMDFFs) using the exponential regulator for rapidity divergences. We obtain results for both unpolarized and linearly polarized distributions through next-to-next-to leading order in strong coupling constant, and through
O
(
ϵ
2
) in dimensional regulator. We find a nontrivial momentum conservation sum rule for the linearly polarized component for both TMDPDFs and TMDFFs in the
N
= 1 super-Yang-Mills theory. The TMDFFs are used to calculate the two-loop gluon jet function for the energy-energy correlator in Higgs gluonic decay in the back-to-back limit.
Journal Article
An ancestral NB-LRR with duplicated 3′UTRs confers stripe rust resistance in wheat and barley
2019
Wheat stripe rust, caused by
Puccinia striiformis
f. sp.
tritici
(
Pst
), is a global threat to wheat production.
Aegilops tauschii
, one of the wheat progenitors, carries the
YrAS2388
locus for resistance to
Pst
on chromosome 4DS. We reveal that
YrAS2388
encodes a typical nucleotide oligomerization domain-like receptor (NLR). The
Pst
-resistant allele
YrAS2388R
has duplicated 3’ untranslated regions and is characterized by alternative splicing in the nucleotide-binding domain. Mutation of the
YrAS2388R
allele disrupts its resistance to
Pst
in synthetic hexaploid wheat; transgenic plants with
YrAS2388R
show resistance to eleven
Pst
races in common wheat and one race of
P
.
striiformis
f. sp.
hordei
in barley. The
YrAS2388R
allele occurs only in
Ae. tauschii
and the
Ae. tauschii
-derived synthetic wheat; it is absent in 100% (
n
= 461) of common wheat lines tested. The cloning of
YrAS2388R
will facilitate breeding for stripe rust resistance in wheat and other Triticeae species.
Stripe rust is a serious threat to wheat production. Here, the authors reveal that the resistance gene, only present in the wheat progenitor
Aegilops tauschii
and its derived synthetic wheat, encodes a nucleotide oligomerization domain-like receptor and confers resistance in common wheat and barley.
Journal Article
Aegilops tauschii single nucleotide polymorphisms shed light on the origins of wheat D-genome genetic diversity and pinpoint the geographic origin of hexaploid wheat
2013
Hexaploid wheat (Triticum aestivum, genomes AABBDD) originated by hybridization of tetraploid Triticum turgidum (genomes AABB) with Aegilops tauschii (genomes DD). Genetic relationships between A. tauschii and the wheat D genome are of central importance for the understanding of wheat origin and subsequent evolution.
Genetic relationships among 477 A. tauschii and wheat accessions were studied with the A. tauschii 10K Infinium single nucleotide polymorphism (SNP) array.
Aegilops tauschii consists of two lineages (designated 1 and 2) having little genetic contact. Each lineage consists of two closely related sublineages. A population within lineage 2 in the southwestern and southern Caspian appears to be the main source of the wheat D genome. Lineage 1 contributed as little as 0.8% of the wheat D genome. Triticum aestivum is subdivided into the western and Far Eastern populations. The Far Eastern population conserved the genetic make-up of the nascent T. aestivum more than the western population. In wheat, diversity is high in chromosomes 1D and 2D and it correlates in all wheat D-genome and A. tauschii chromosomes with recombination rates.
Gene flow from A. tauschii was an important source of wheat genetic diversity and shaped its distribution along the D-genome chromosomes.
Journal Article
Myb10-D confers PHS-3D resistance to pre-harvest sprouting by regulating NCED in ABA biosynthesis pathway of wheat
by
Lang, Jing
,
Zhu, Tingting
,
Wei, Yuming
in
9-cis-epoxycarotenoid dioxygenase
,
Abscisic acid
,
Aegilops tauschii
2021
• Pre-harvest sprouting (PHS), the germination of grain before harvest, is a serious problem resulting in wheat yield and quality losses.
• Here, we mapped the PHS resistance gene PHS-3D from synthetic hexaploid wheat to a 2.4 Mb presence–absence variation (PAV) region and found that its resistance effect was attributed to the pleiotropic Myb10-D by integrated omics and functional analyses.
• Three haplotypes were detected in this PAV region among 262 worldwide wheat lines and 16 Aegilops tauschii, and the germination percentages of wheat lines containing Myb10-D was approximately 40% lower than that of the other lines. Transcriptome and metabolome profiling indicated that Myb10-D affected the transcription of genes in both the flavonoid and abscisic acid (ABA) biosynthesis pathways, which resulted in increases in flavonoids and ABA in transgenic wheat lines. Myb10-D activates 9-cis-epoxycarotenoid dioxygenase (NCED) by biding the secondary wall MYB-responsive element (SMRE) to promote ABA biosynthesis in early wheat seed development stages.
• We revealed that the newly discovered function of Myb10-D confers PHS resistance by enhancing ABA biosynthesis to delay germination in wheat. The PAV harboring Myb10-D associated with grain color and PHS will be useful for understanding and selecting white grained PHS resistant wheat cultivars.
Journal Article
Dynamics and Correlation of Serum Cortisol and Corticosterone under Different Physiological or Stressful Conditions in Mice
2015
Although plasma corticosterone is considered the main glucocorticoid involved in regulation of stress responses in rodents, the presence of plasma cortisol and whether its level can be used as an indicator for rodent activation of stress remain to be determined. In this study, effects of estrous cycle stage, circadian rhythm, and acute and chronic (repeated or unpredictable) stressors of various severities on dynamics and correlation of serum cortisol and corticosterone were examined in mice. A strong (r = 0.6-0.85) correlation between serum cortisol and corticosterone was observed throughout the estrous cycle, all day long, and during acute or repeated restraints, chronic unpredictable stress and acute forced swimming or heat stress. Both hormones increased to the highest level on day 1 of repeated-restraint or unpredictable stresses, but after that, whereas the concentration of cortisol did not change, that of corticosterone showed different dynamics. Thus, whereas corticosterone declined dramatically during repeated restraints, it remained at the high level during unpredictable stress. During forced swimming or heat stress, whereas cortisol increased to the highest level within 3 min., corticosterone did not reach maximum until 40 min. of stress. Analysis with HPLC and HPLC-MS further confirmed the presence of cortisol in mouse serum. Taken together, results (i) confirmed the presence of cortisol in mouse serum and (ii) suggested that mouse serum cortisol and corticosterone are closely correlated in dynamics under different physiological or stressful conditions, but, whereas corticosterone was a more adaptation-related biomarker than cortisol during chronic stress, cortisol was a quicker responder than corticosterone during severe acute stress.
Journal Article
Three point energy correlators in the collinear limit: symmetries, dualities and analytic results
by
Zhang, Xiaoyuan
,
Luo, Ming-Xing
,
Yang, Tong-Zhi
in
Classical and Quantum Gravitation
,
Correlation
,
Correlation analysis
2020
A
bstract
Energy Correlators measure the energy deposited in multiple detectors as a function of the angles between the detectors. In this paper, we analytically compute the three particle correlator in the collinear limit in QCD for quark and gluon jets, and also in
N
= 4 super Yang-Mills theory. We find an intriguing duality between the integrals for the energy correlators and infrared finite Feynman parameter integrals, which maps the angles of the correlators to dual momentum variables. In
N
= 4, we use this duality to express our result as a rational sum of simple Feynman integrals (triangles and boxes). In QCD our result is expressed as a sum of the same transcendental functions, but with more complicated rational functions of cross ratio variables as coefficients. Our results represent the first analytic calculation of a three-prong jet substructure observable of phenomenological relevance for the LHC, revealing unexplored simplicity in the energy flow of QCD jets. They also provide valuable data for improving the understanding of the light-ray operator product expansion.
Journal Article
A rare gain of function mutation in a wheat tandem kinase confers resistance to powdery mildew
2020
Powdery mildew, caused by
Blumeria graminis
f. sp.
tritici
(
Bgt
), is one of the most destructive diseases that pose a great threat to wheat production. Wheat landraces represent a rich source of powdery mildew resistance. Here, we report the map-based cloning of powdery mildew resistance gene
Pm24
from Chinese wheat landrace Hulutou. It encodes a tandem kinase protein (TKP) with putative kinase-pseudokinase domains, designated WHEAT TANDEM KINASE 3 (WTK3). The resistance function of
Pm24
was validated by transgenic assay, independent mutants, and allelic association analyses. Haplotype analysis revealed that a rare 6-bp natural deletion of lysine-glycine codons, endemic to wheat landraces of Shaanxi Province, China, in the kinase I domain (Kin I) of WTK3 is critical for the resistance function. Transgenic assay of WTK3 chimeric variants revealed that only the specific two amino acid deletion, rather than any of the single or more amino acid deletions, in the Kin I of WTK3 is responsible for gaining the resistance function of WTK3 against the
Bgt
fungus.
Powdery mildew is a major threat to world wheat yields. Here the authors describe the map-based cloning of
Pm24
, a gain-of-function powdery mildew resistance allele that encodes a tandem kinase-pseudokinase protein with a deletion in a kinase domain that is endemic to certain wheat landraces.
Journal Article