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53 result(s) for "Pavlova, Nadezhda"
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Fear memory in humans is consolidated over time independently of sleep
Fear memories can be altered after acquisition by processes, such as fear memory consolidation or fear extinction, even without further exposure to the fear-eliciting stimuli, but factors contributing to these processes are not well understood. Sleep is known to consolidate, strengthen, and change newly acquired declarative and procedural memories. However, evidence on the role of time and sleep in the consolidation of fear memories is inconclusive. We used highly sensitive electrophysiological measures to examine the development of fear-conditioned responses over time and sleep in humans. We assessed event-related brain potentials (ERP) in 18 healthy, young individuals during fear conditioning before and after a 2-hour afternoon nap or a corresponding wake interval in a counterbalanced within-subject design. The procedure involved pairing a neutral tone (CS+) with a highly unpleasant sound. As a control, another neutral tone (CS−) was paired with a neutral sound. Fear responses were examined before the interval during a habituation phase and an acquisition phase as well as after the interval during an extinction phase and a reacquisition phase. Differential fear conditioning during acquisition was evidenced by a more negative slow ERP component (stimulus-preceding negativity) developing before the unconditioned stimulus (loud noise). This differential fear response was even stronger after the interval during reacquisition compared with initial acquisition, but this effect was similarly pronounced after sleep and wakefulness. These findings suggest that fear memories are consolidated over time, with this effect being independent of intervening sleep.
The Conceptual Basis for The Formation of a Single Educational Space
The article deals with the study of educational trends at global and national levels. The purpose of the research is to study and analyze the conceptual foundations of the creation of a unified educational space. The main research methods involve studying literary sources, conducting theoretical analysis, and employing logical generalization methods. The research conducted allowed revealing the conceptual foundations of the unified educational space formation. The article identifies reference trends that characterize crisis developments in educational activities at the global and national levels. It is determined that in the conditions where humanity has come close to the borders of its existence on a global scale, the traditional universal values laid down in the foundation of modern man-made civilization will ensure its survival. In this regard, the task of the educational system based on universal human values is to develop knowledge and the foundations of existence that ensure the survival of civilization. Above all, this should be a philosophy of conservation and sustainable development.
Functional Determinants and Evolutionary Consequences of Pleiotropy in Complex and Mendelian Traits
Abstract Pleiotropy, a phenomenon of multiple phenotypic effects of the same genetic alteration, is one of the most important features of genotype-to-phenotype networks. Over the last century, biologists have actively debated the prevalence, mechanisms, and consequences of pleiotropy. In this work, we employed data on genotype-to-phenotype associations from the Human Phenotype Ontology and Mouse Genome Database, as well as genome-wide associations from the UK Biobank and FinnGen cohorts to investigate the similarities and dissimilarities in the patterns of pleiotropy between species and different trait types (i.e. Mendelian traits and complex traits). We found that the pleiotropic effects of genes correlate well between species but have a much weaker correlation when comparing different types of traits for the same species. In all cases, however, highly pleiotropic genes possessed a common set of features, such as broad expression across tissues, involvement in many biological processes, or a high number of protein–protein interactions of the respective gene products. Furthermore, we observed a universal tendency of highly pleiotropic genes to be under greater negative selection pressure compared to other groups of genes, including genes essential for cell growth and development. Besides, highly pleiotropic genes also show a significant enrichment of recent positive selection signals. Taken together, our results pinpoint a common mechanism underlying pleiotropic effects in different trait domains and suggest that high degree of pleiotropy plays a role in adaptation, despite imposing additional constraint on genetic variation.
Dynamic Changes and Influencing Factors Analysis of Groundwater Icings in the Permafrost Region in Central Sakha (Yakutia) Republic under Modern Climatic Conditions
In central Sakha (Yakutia) Republic, groundwater icings, primarily formed by intrapermafrost water, are less prone to contamination and serve as a stable freshwater resource. The periodic growth of icings threatens infrastructure such as roads, railways, and bridges in permafrost areas. Therefore, research in this field has become urgently necessary. This study aims to analyze the impacts of various factors on the scale of icing formation using Landsat satellite data, Gravity Recovery and Climate Experiment (GRACE)/GRACE Follow-On (GRACE-FO) data, Global Land Data Assimilation System (GLDAS) data, and field observation results. The results showed that the surface area of icings in the study area showed an overall increasing trend from 2002 to 2022, with an average growth rate of 0.06 km2/year. Suprapermafrost water and intrapermafrost water are the main sources of icings in the study area. The total Groundwater Storage Anomaly (GWSA) values from October to April showed a strong correlation with the maximum icing areas. Icings fed by suprapermafrost water were influenced by precipitation in early autumn, while those fed by intrapermafrost water were more affected by talik size and distribution. Climate warming contributed to the degradation of the continuous permafrost covering an area of 166 km2 to discontinuous permafrost, releasing additional groundwater. This may also be one of the reasons for the observed increasing trend in icing areas. This study can provide valuable insights into water resource management and infrastructure construction in permafrost regions.
Quantitative nontumorous and tumorous human brain tissue assessment using microstructural co- and cross-polarized optical coherence tomography
Optical coherence tomography (OCT) is a promising method for detecting cancer margins during tumor resection. This study focused on differentiating tumorous from nontumorous tissues in human brain tissues using cross-polarization OCT (CP OCT). The study was performed on fresh ex vivo human brain tissues from 30 patients with high- and low-grade gliomas. Different tissue types that neurosurgeons should clearly distinguish during surgery, such as the cortex, white matter, necrosis and tumorous tissue, were separately analyzed. Based on volumetric CP OCT data, tumorous and normal brain tissue were differentiated using two optical coefficients — attenuation and forward cross-scattering. Compared with white matter, tumorous tissue without necrotic areas had significantly lower optical attenuation and forward cross-scattering values. The presence of particular morphological patterns, such as necrosis and injured myelinated fibers, can lead to dramatic changes in coefficient values and create some difficulties in differentiating between tissues. Color-coded CP OCT maps based on optical coefficients provided a visual assessment of the tissue. This study demonstrated the high translational potential of CP OCT in differentiating tumorous tissue from white matter. The clinical use of CP OCT during surgery in patients with gliomas could increase the extent of tumor resection and improve overall and progression-free survival.
The Modifying Effect of Obesity on the Association of Matrix Metalloproteinase Gene Polymorphisms with Breast Cancer Risk
Objective: We investigated the possible modifying effect of obesity on the association of matrix metalloproteinase (MMP) gene polymorphisms with breast cancer (BC) risk. Methods: A total of 1104 women divided into two groups according to their body mass index (BMI): BMI ≥ 30 (119 BC, and 190 control) and BMI < 30 (239 BC, and 556 control) were genotyped for specially selected (according to their association with BC in the previous study) 10 single-nucleotide polymorphisms (SNP) of MMP1, 2, 3, 8, and 9 genes. Logistic regression association analysis was performed in each studied group of women (with/without obesity). Functional annotation of BC-correlated MMP polymorphic variants was analyzed by in silico bioinformatics. Results: We observed significant differences in the involvement of MMP SNPs in BC in obese and non-obese women. Polymorphic loci MMP9 (c.836 A > G (rs17576) and c. 1721 C > G (rs2250889)) were BC-protective factors in obese women (OR 0.71, allelic model, and OR 0.55, additive model, respectively). Genotypes TT MMP2 (c.-1306 C > T,rs243865) and AA MMP9 (c. 1331-163 G > A,rs3787268) determined BC susceptibility in non-obese women (OR 0.31, and OR 2.36, respectively). We found in silico substantial multidirectional influences on gene expression in adipose tissue BC-related polymorphic loci: BC risk allele A-rs3787268 in non-obese women is associated with low expression NEURL2, PLTP, RP3-337O18.9, SPATA25, and ZSWIM1, whereas BC risk allele A-rs17576 in obese women is associated with high expression in the same genes in visceral and/or subcutaneous adipose. Conclusions: our study indicated that obesity has a significant modifying effect on the association of MMP genes with BC risk in postmenopausal women.
Expression of Opsin Genes in the Retina of Female and Male Three-Spined Sticklebacks Gasterosteus aculeatus L.: Effect of Freshwater Adaptation and Prolactin Administration
Color vision sensitivity is crucial for fish adaptation during migration and reproduction. Prolactin and prolactin-like hormone are important regulators in both these processes. We hypothesized that prolactin influences the color vision sensitivity during freshwater migrations in fish. We studied the effects of prolactin and freshwater adaptation during the spawning period on the expression of opsin genes (SWS1, SWS2, RH2, LWS) in the retina of female and male three-spined sticklebacks Gasterosteus aculeatus L. Expression of the prolactin gene increased in the brain of females, but not males, while expression of the prolactin-like hormone decreased in the brain of both male and female sticklebacks during freshwater adaptation. Expression of the SWS2 gene decreased in the retina of females and males during freshwater adaptation and after prolactin administration. Expression of the SWS1 gene decreased in the retina of male sticklebacks after prolactin administration, but not during freshwater adaptation. Expression of the RH2 and LWS genes did not depend on prolactin administration in male and female sticklebacks. We conclude that expression of some opsin genes in the retina of sticklebacks is regulated by prolactin and depends on sex and freshwater adaptation. This expands our knowledge of the adaptive effects of prolactin on fish during freshwater migrations.
Geology, Structure, Ground Temperature and Groundwater Level in Aquifer Taliks in the Shestakovka River Basin, Eastern Siberia
The objective of this study was to evaluate subaerial taliks’ geology, configuration, ground temperature and groundwater level in the continuous permafrost environment of Central Yakutia (Eastern Siberia). The study included geophysical surveys, borehole drilling and measurements of ground temperature and groundwater level variation in a talik aquifer in the Shestakovka research watershed. The talik occupies a gentle, sandy slope covered by a sparse pine forest. Its thickness varies from 3 to 17 m. The talik has several water-conducting branches along its slope. The seasonal thaw layer outside the talik and the talik itself form a single aquifer at the end of the summer. Water-saturated deposits in the talik have a temperature of about 0 °C throughout the year and do not freeze because of the constant filtration of water through the pores and convective heat transfer. Although the groundwater level is relatively close to the land surface, at a depth of just 1–3 m, it has very weak response to snowmelt and precipitation events. The maximum groundwater level occurs in February under cryogenic pressure due to deep seasonal ground freezing above the talik aquifer. Complicated relations between the landscape and the groundwater in the given geological conditions lead to the long-term existence of talik aquifers in the continuous permafrost environment.
Statistical Dissection of the Genetic Determinants of Phenotypic Heterogeneity in Genes with Multiple Associated Rare Diseases
Phenotypicheterogeneity is a phenomenon in which distinct phenotypes can develop in individuals bearing pathogenic variants in the same gene. Genetic factors, gene interactions, and environmental factors are usually considered the key mechanisms of this phenomenon. Phenotypic heterogeneity may impact the prognosis of the disease severity and symptoms. In our work, we used publicly available data on the association between genetic variants and Mendelian disease to investigate the genetic factors (such as the intragenic localization and type of a variant) driving the heterogeneity of gene–disease relationships. First, we showed that genes linked to multiple rare diseases (GMDs) are more constrained and tend to encode more transcripts with high levels of expression across tissues. Next, we assessed the role of variant localization and variant types in specifying the exact phenotype for GMD variants. We discovered that none of these factors is sufficient to explain the phenomenon of such heterogeneous gene–disease relationships. In total, we identified only 38 genes with a weak trend towards significant differences in variant localization and 30 genes with nominal significant differences in variant type for the two associated disorders. Remarkably, four of these genes showed significant differences in both tests. At the same time, our analysis suggests that variant localization and type are more important for genes linked to autosomal dominant disease. Taken together, our results emphasize the gene-level factors dissecting distinct Mendelian diseases linked to one common gene based on open-access genetic data and highlight the importance of exploring other factors that contributed to phenotypic heterogeneity.
Hydrogeology of Reclaimed Floodplain in A Permafrost Area, Yakutsk, Russia
A study was performed to evaluate the current permafrost and groundwater conditions in the reclaimed floodplain of the Lena, one of the largest rivers in the permafrost zone. Data from ongoing hydrogeological monitoring were compared with earlier observations conducted during the reclamation process. The results demonstrate that the placement of dredged fill led to the development of suprapermafrost thaw zones (taliks). The anthropogenic taliks vary in thickness from 10 to 15 m in areas of buried bars to 20 m or more in the former locations of oxbow lakes. There is similarity in seasonal groundwater fluctuation patterns and response to river stage variations across the study area suggesting that a continuous aquifer connected to surface water. The connection with the river is most evident during the spring flood period. Two mechanisms of ground saturation are identified during this time. One is lateral seepage flow from the Lena River into the fill mass. The zone of its influence is limited to 150–170 m from the stream. The second is hydraulic pressure transmission from the river through the subchannel flow connected with the anthropogenic suprapermafrost aquifer. Its influence extends across the entire fill area. Continuous water movement at the base of the fill prevents permafrost aggradation from below. The study results should be taken into account when developing and implementing design and construction standards for engineering structures in the reclaimed floodplains of the permafrost zone.