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"Wan, Yongqing"
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Identification of the WRKY gene family and functional analysis of two genes in Caragana intermedia
2018
Background
WRKY transcription factors, one of the largest families of transcriptional regulators in plants, play important roles in plant development and various stress responses. The WRKYs of
Caragana intermedia
are still not well characterized, although many WRKYs have been identified in various plant species.
Results
We identified 53
CiWRKY
genes from
C. intermedia
transcriptome data, 28 of which exhibited complete open reading frames (ORFs). These CiWRKYs were divided into three groups via phylogenetic analysis according to their WRKY domains and zinc finger motifs. Conserved domain analysis showed that the CiWRKY proteins contain a highly conserved WRKYGQK motif and two variant motifs (WRKYGKK and WKKYEEK). The subcellular localization of CiWRKY26 and CiWRKY28–1 indicated that these two proteins localized exclusively to nuclei, supporting their role as transcription factors. The expression patterns of the 28
CiWRKYs
with complete ORFs were examined through quantitative real-time PCR (qRT-PCR) in various tissues and under different abiotic stresses (drought, cold, salt, high-pH and abscisic acid (ABA)). The results showed that each
CiWRKY
responded to at least one stress treatment. Furthermore, overexpression of
CiWRKY75–1
and
CiWRKY40–4
in
Arabidopsis thaliana
suppressed the drought stress tolerance of the plants and delayed leaf senescence, respectively.
Conclusions
Fifty-three
CiWRKY
genes from the
C. intermedia
transcriptome were identified and divided into three groups via phylogenetic analysis. The expression patterns of the 28
CiWRKYs
under different abiotic stresses suggested that each Ci
WRKY
responded to at least one stress treatment. Overexpression of
CiWRKY75–1
and
CiWRKY40–4
suppressed the drought stress tolerance of
Arabidopsis
and delayed leaf senescence, respectively. These results provide a basis for the molecular mechanism through which CiWRKYs mediate stress tolerance.
Journal Article
Multi-omics analysis reveals the molecular changes accompanying heavy-grazing-induced dwarfing of Stipa grandis
2022
Heavy grazing significantly reduces
Stipa grandis
growth. To enhance our understanding of plant responses to heavy grazing, we conducted transcriptomic, proteomic, and metabolic analyses of the leaves of non-grazed plants (NG) and heavy-grazing-induced dwarf plants (HG) of
S. grandis
. A total of 101 metabolites, 167 proteins, and 1,268 genes differed in abundance between the HG and NG groups. Analysis of Kyoto Encyclopedia of Genes and Genomes pathways among differentially accumulated metabolites (DAMs) revealed that the most enriched pathways were flavone and flavonol biosynthesis, tryptophan metabolism, and phenylpropanoid biosynthesis. An integrative analysis of differentially expressed genes (DEGs) and proteins, and DAMs in these three pathways was performed. Heavy-grazing-induced dwarfism decreased the accumulation of DAMs enriched in phenylpropanoid biosynthesis, among which four DAMs were associated with lignin biosynthesis. In contrast, all DAMs enriched in flavone and flavonol biosynthesis and tryptophan metabolism showed increased accumulation in HG compared with NG plants. Among the DAMs enriched in tryptophan metabolism, three were involved in tryptophan-dependent IAA biosynthesis. Some of the DEGs and proteins enriched in these pathways showed different expression trends. The results indicated that these pathways play important roles in the regulation of growth and grazing-associated stress adaptions of
S. grandis
. This study enriches the knowledge of the mechanism of heavy-grazing-induced growth inhibition of
S. grandis
and provides valuable information for restoration of the productivity in degraded grassland.
Journal Article
Breaking Redox Barriers in Lithium-Oxygen Batteries via Multiscale Architecture of Pyridinic Nitrogen-Doped Carbon-Encapsulated Cobalt Catalysts
2025
Lithium-oxygen batteries (LOBs) are limited by sluggish oxygen redox kinetics and cathode instability. Herein, we report a cobalt particle catalyst encapsulated in nitrogen-doped carbon (Co@NC) with a three-dimensional hierarchical architecture, synthesized via a chitosan-derived hierarchical porous carbon framework. This innovative design integrates uniformly dispersed ultra-thin carbon shells (11.7 nm), pyridinic nitrogen doping, and Co particles (1.41 μm) stabilized through carbon-support electronic coupling. The hierarchical porosity facilitates rapid O2/Li+ mass transport, while pyridinic N sites act as dual-function electrocatalytic centers for Li2O2 nucleation and charge transfer kinetics. Co@NC achieves 11,213 mAh g−1 at 200 mA g−1 (126.5% higher than nitrogen-doped carbon) and maintains 1.54 V overpotential (500 mAh g−1). These metrics outperform benchmark catalysts, addressing kinetic and stability challenges in LOBs. The study advances electrocatalyst design by integrating structural optimization, heteroatom doping, and electronic coupling strategies for high-performance metal–air batteries.
Journal Article
Analysis of Metabolite Accumulation Related to Pod Color Variation of Caragana intermedia
2019
Caragana intermedia, a leguminous shrub widely distributed in cold and arid regions, is rich in secondary metabolites and natural active substances, with high nutritional and medical values. It is interesting that the pods of C. intermedia often show different colors among individual plants. In this study, 10-, 20- and 30-day-old red and green pods of C. intermedia were used to identify and characterize important metabolites associated with pod color. A total 557 metabolites, which could be classified into 21 groups, were detected in the pod extracts using liquid chromatography coupled with ESI-triple quadrupole-linear ion trap mass spectrometer (LC-ESI-MS/MS). Metabolomics analysis revealed significant differences in 15 groups of metabolites between red and green pods, including amino acids, nucleotide derivatives, flavonoids, and phytohormones. Metabolic pathway analysis showed that the shikimic acid and the phytohormone metabolic pathways were extraordinarily active in red pods, and the difference between red and green pods was obvious. Moreover, red pods showed remarkable flavonoids, cytokinins, and auxin accumulation, and the content of total flavonoids and proanthocyanidins in 30-day-old red pods was significantly higher than that in green pods. This metabolic profile contributes to valuable insights into the metabolic regulation mechanism in different color pods.
Journal Article
Selection of Reference Genes for qRT-PCR Analysis of Gene Expression in Stipa grandis during Environmental Stresses
2017
Stipa grandis P. Smirn. is a dominant plant species in the typical steppe of the Xilingole Plateau of Inner Mongolia. Selection of suitable reference genes for the quantitative real-time reverse transcription polymerase chain reaction (qRT-PCR) is important for gene expression analysis and research into the molecular mechanisms underlying the stress responses of S. grandis. In the present study, 15 candidate reference genes (EF1 beta, ACT, GAPDH, SamDC, CUL4, CAP, SNF2, SKIP1, SKIP5, SKIP11, UBC2, UBC15, UBC17, UCH, and HERC2) were evaluated for their stability as potential reference genes for qRT-PCR under different stresses. Four algorithms were used: GeNorm, NormFinder, BestKeeper, and RefFinder. The results showed that the most stable reference genes were different under different stress conditions: EF1beta and UBC15 during drought and salt stresses; ACT and GAPDH under heat stress; SKIP5 and UBC17 under cold stress; UBC15 and HERC2 under high pH stress; UBC2 and UBC15 under wounding stress; EF1beta and UBC17 under jasmonic acid treatment; UBC15 and CUL4 under abscisic acid treatment; and HERC2 and UBC17 under salicylic acid treatment. EF1beta and HERC2 were the most suitable genes for the global analysis of all samples. Furthermore, six target genes, SgPOD, SgPAL, SgLEA, SgLOX, SgHSP90 and SgPR1, were selected to validate the most and least stable reference genes under different treatments. Our results provide guidelines for reference gene selection for more accurate qRT-PCR quantification and will promote studies of gene expression in S. grandis subjected to environmental stress.
Journal Article
De novo Assembly and Transcriptomic Profiling of the Grazing Response in Stipa grandis
2015
Stipa grandis (Poaceae) is one of the dominant species in a typical steppe of the Inner Mongolian Plateau. However, primarily due to heavy grazing, the grasslands have become seriously degraded, and S. grandis has developed a special growth-inhibition phenotype against the stressful habitat. Because of the lack of transcriptomic and genomic information, the understanding of the molecular mechanisms underlying the grazing response of S. grandis has been prohibited.
Using the Illumina HiSeq 2000 platform, two libraries prepared from non-grazing (FS) and overgrazing samples (OS) were sequenced. De novo assembly produced 94,674 unigenes, of which 65,047 unigenes had BLAST hits in the National Center for Biotechnology Information (NCBI) non-redundant (nr) database (E-value < 10-5). In total, 47,747, 26,156 and 40,842 unigenes were assigned to the Gene Ontology (GO), Clusters of Orthologous Group (COG), and Kyoto Encyclopedia of Genes and Genomes (KEGG) databases, respectively. A total of 13,221 unigenes showed significant differences in expression under the overgrazing condition, with a threshold false discovery rate ≤ 0.001 and an absolute value of log2Ratio ≥ 1. These differentially expressed genes (DEGs) were assigned to 43,257 GO terms and were significantly enriched in 32 KEGG pathways (q-value ≤ 0.05). The alterations in the wound-, drought- and defense-related genes indicate that stressors have an additive effect on the growth inhibition of this species.
This first large-scale transcriptome study will provide important information for further gene expression and functional genomics studies, and it facilitated our investigation of the molecular mechanisms of the S. grandis grazing response and the associated morphological and physiological characteristics.
Journal Article
Differential Responses of Dominant Plants to Grazing in Typical Temperate Grassland in Inner Mongolia
2022
Leymus chinensis, Stipa grandis, Artemisia frigida, and Cleistogenes squarrosa are the dominant plant species in typical temperate grasslands in Xilingol. Intensive studies related to overgrazing, which resulted in a dominant plant shift, have been carried out in recent years, but the ways in which these four species respond to different grazing intensities remain elusive. In this study, the contents of primary metabolites, secondary metabolites, and phytohormones in the leaves of these species under five grazing intensities were assayed and compared. The results showed that A. frigida contained higher amounts of lignin, while C. squarrosa contained higher amounts of total flavonoids than the other species. Leymus chinensis showed a different accumulation of cellulose and tannin in response to grazing, compared with the other three species. Stipa grandis and A. frigida increased in soluble protein contents in response to different grazing treatments. In particular, the contents of phytohormones, such as abscisic acid, salicylic acid, and gibberellins, were markedly changed under grazing. Leymus chinensis exhibited different abscisic acid and gibberellins accumulation patterns compared with the other species, under the different grazing intensities. Patterns of salicylic acid accumulation were similar (except under light and moderate grazing intensities in A. frigida) among the four species. The results indicated that the four species differed in adaptive strategies to cope with the different grazing intensities, and phytohormones played important roles in coordinating the regulation of their growth and grazing tolerance. This study provides a foundation for elucidating the mechanisms of overgrazing-induced degradation of the Xilingol grassland.
Journal Article
Phase Change Materials Application in Battery Thermal Management System: A Review
by
Zhou, Dechuang
,
Wang, Jian
,
Wan, Yongqing
in
Composite materials
,
Construction materials
,
Energy consumption
2020
The purpose of a battery thermal management system (BTMS) is to maintain the battery safety and efficient use as well as ensure the battery temperature is within the safe operating range. The traditional air-cooling-based BTMS not only needs extra power, but it could also not meet the demand of new lithium-ion battery (LIB) packs with high energy density, while liquid cooling BTMS requires complex devices to ensure the effect. Therefore, phase change materials (PCMs)-based BTMS is becoming the trend. By using PCMs to absorb heat, the temperature of a battery pack could be kept within the normal operating range for a long time without using any external power. PCMs could greatly improve the heat dissipation efficiency of BTMS by combining with fillers such as expanded graphite (EG) and metal foam for their high thermal conductivity or coordinating with fins. In addition, PCMs could also be applied in construction materials, solar thermal recovery, textiles and other fields. Herein, a comprehensive review of the PCMs applied in thermal storage devices, especially in BTMS, is provided. In this work, the literature concerning current issues have been reviewed and summarized, while the key challenges of PCM application have been pointed out. This review may bring new insights to the PCM application.
Journal Article
Genome-Wide Analysis of WRKY Transcription Factors Involved in Abiotic Stress and ABA Response in Caragana korshinskii
2023
The WRKY transcription factor family plays a vital role in plant development and environmental response. However, the information of WRKY genes at the genome-wide level is rarely reported in Caragana korshinskii. In this study, we identified and renamed 86 CkWRKY genes, which were further classified into three groups through phylogenetic analysis. Most of these WRKY genes were clustered and distributed on eight chromosomes. Multiple sequence alignment revealed that the conserved domain (WRKYGQK) of the CkWRKYs was basically consistent, but there were also six variation types (WRKYGKK, GRKYGQK, WRMYGQK, WRKYGHK, WKKYEEK and RRKYGQK) that appeared. The motif composition of the CkWRKYs was quite conservative in each group. In general, the number of WRKY genes gradually increased from lower to higher plant species in the evolutionary analysis of 28 species, with some exceptions. Transcriptomics data and RT-qPCR analysis showed that the CkWRKYs in different groups were involved in abiotic stresses and ABA response. Our results provided a basis for the functional characterization of the CkWRKYs involved in stress resistance in C. korshinskii.
Journal Article
Genome-wide Identification of PP2C Genes and Their Expression Profiling in Response to Drought and Cold Stresses in Medicago truncatula
2018
Type 2 C protein phosphatases (PP2Cs) represent the major group of protein phosphatases in plants and play important roles in various plant processes. In this study, 94
MtPP2C
genes were identified from
Medicago truncatula
and further phylogenetically classified into 13 subfamilies, as supported by exon-intron organization and conserved motif composition. Collinearity analysis indicated that segmental duplication events played a crucial role in the expansion of
MtPP2C
gene families in
M
.
truncatula
. Furthermore, the expression profiles of
MtPP2Cs
under different abiotic treatments were analyzed using qRT-PCR. Results showed that these
MtPP2Cs
genes displayed different expression patterns in response to drought, cold and ABA stress conditions and some of the key stress responsive
MtPP2Cs
genes have been identified. Our study presents a comprehensive overview of the
PP2C
gene family in
M
.
truncatula
, which will be useful for further functional characterization of MtPP2Cs in plant drought and cold stress responses.
Journal Article