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Several studies have been conducted using fungi in the biological control of domestic animals and humans. In this respect, a large amount of research has been undertaken to understand the particularities of each fungus used. These fungi have been demonstrated to act on all classes of helminthes. Therefore, they should not only be called nematophagous but also helmintophagous. Evidence of enzymatic action has also revealed their mechanism of action, as well as potential metabolites that could be synthesized as bioactive molecules. Cultural barriers to the use of fungi should be broken down, since the impact on the environment is minimal. In this context, much is already known about the mechanism of interaction of these organisms with their ‘targets’. Recent research has pointed to the search for substances derived from nematophagous fungi that have demonstrated their ovicidal and/or larvicidal activity, thus being a global premise to be studied further. Crude extracts derived from nematophagous fungi of predator and ovicidal groups reduce the amount of larvae of gastrointestinal nematodes and prevent the hatching of their eggs, since they have been demonstrated to act with extracellular proteases and other enzymes. Furthermore, the activity of these enzymes has begun to be explored regarding their possible interaction with the exoskeleton of arthropods, which could emerge as an alternative method of tick control. Finally, it should be clear that nematophagous fungi in general are ‘old friends’ that are ready to the ‘fight with our old enemies’, the gastrointestinal helminth parasites harmful to human and animal health.

Parasitic helminth infections have a considerable impact on global human health as well as animal welfare and production. Although co-infection with multiple parasite species within a host is common, there is a dearth of tools with which to study the composition of these complex parasite communities. Helminth species vary in their pathogenicity, epidemiology and drug sensitivity and the interactions that occur between co-infecting species and their hosts are poorly understood. We describe the first application of deep amplicon sequencing to study parasitic nematode communities as well as introduce the concept of the gastro-intestinal \"nemabiome\". The approach is analogous to 16S rDNA deep sequencing used to explore microbial communities, but utilizes the nematode ITS-2 rDNA locus instead. Gastro-intestinal parasites of cattle were used to develop the concept, as this host has many well-defined gastro-intestinal nematode species that commonly occur as complex co-infections. Further, the availability of pure mono-parasite populations from experimentally infected cattle allowed us to prepare mock parasite communities to determine, and correct for, species representation biases in the sequence data. We demonstrate that, once these biases have been corrected, accurate relative quantitation of gastro-intestinal parasitic nematode communities in cattle fecal samples can be achieved. We have validated the accuracy of the method applied to field-samples by comparing the results of detailed morphological examination of L3 larvae populations with those of the sequencing assay. The results illustrate the insights that can be gained into the species composition of parasite communities, using grazing cattle in the mid-west USA as an example. However, both the technical approach and the concept of the 'nemabiome' have a wide range of potential applications in human and veterinary medicine. These include investigations of host-parasite and parasite-parasite interactions during co-infection, parasite epidemiology, parasite ecology and the response of parasite populations to both drug treatments and control programs.

Parasitic nematodes (roundworms) of small ruminants and other livestock have major economic impacts worldwide. Despite the impact of the diseases caused by these nematodes and the discovery of new therapeutic agents (anthelmintics), there has been relatively limited progress in the development of practical molecular tools to study the epidemiology of these nematodes. Specific diagnosis underpins parasite control, and the detection and monitoring of anthelmintic resistance in livestock parasites, presently a major concern around the world. The purpose of the present article is to provide a concise account of the biology and knowledge of the epidemiology of the gastrointestinal nematodes (order Strongylida), from an Australian perspective, and to emphasize the importance of utilizing advanced molecular tools for the specific diagnosis of nematode infections for refined investigations of parasite epidemiology and drug resistance detection in combination with conventional methods. It also gives a perspective on the possibility of harnessing genetic, genomic and bioinformatic technologies to better understand parasites and control parasitic diseases.

Background Gastrointestinal nematode (GIN) infections are common in domestic sheep and impact directly and indirectly on the health of infected animals as well as on the associated economic production. In this study, we aim at summarizing the current knowledge on the influence of GIN infections on sheep production by conducting a systematic review. A subsequent meta-analysis of relevant studies was performed to provide an estimate of the effect of GIN infections on weight gain, wool production and milk yield. Methods A literature search was performed on the CAB, Pubmed and Web of Science database for the period 1960–2012. Inclusion criteria were: 1) Measurement of at least one production parameter. 2) Comparison between groups of sheep with different nematode burdens. 3) Same conditions regarding all aspects except parasite burden between groups. 4) Quantitative measurements of one or more production traits. Results Altogether, 88 studies describing 218 trials were included in this review. The majority of studies (86 %) reported that GIN infections had a negative effect on production but this was reported to be statistically significant in only 43 % of the studies. Meta-analysis indicated that performances of sheep infected with nematodes was 85, 90 and 78 % of the performance in uninfected individuals for weight gain, wool production and milk yield respectively. Our results suggest a possible reporting bias or small study effect for the estimation of the impact of GIN infections on weight gain. Finally, a general linear model provided an estimate for the decrease in weight gain in relation to the increase in faecal egg count of nematodes. Conclusion This study underlines the importance of GIN infections for sheep production and highlights the need to improve parasite management in sheep, in particular in face of challenges such as anthelmintic resistance.

Young dogs are particularly susceptible to infections with endoparasites. The occurrence of endoparasites was investigated in young dogs from Central Germany between July 2020 and July 2022. In total, 386 fecal samples originating from 171 dogs were examined for the prevalence of endoparasites using a combined flotation- and sedimentation technique and conventional PCR. Overall, in 41.2% (159/386) of the examined samples, endoparasites were detected. The most frequently occurring endoparasites were Giardia duodenalis (29%), Cryptosporidium spp. (9.1%), Cystoisospora spp. (7.3%), and Toxocara canis (6%). Sequencing of G. duodenalis positive samples showed that most infections belonged to the host-specific assemblages C (38.4% (43/112)) and D (35.7% (40/112)). The zoonotic assemblage A was identified in 8% (9/112) of the samples. Moreover, mixed infections were observed as follows: C/D in 5 (4.5%), D/A in 4 (3.6%), and C/A in 3 (2.7%) samples. All assemblage A infections were assigned to the potentially zoonotic subassemblage AI. Co-infections of G. duodenalis and Cryptosporidium spp. were observed in 3.1% (12/386) of the samples. Analyzing several host factors for their potential association with endoparasitic infection, the origin of dogs, as well as the living environment were identified as the main risk factors for infection with endoparasites. Overall, this study shows a high infection rate with endoparasites, especially G. duodenalis , in young dogs from Germany. The results of this study contribute to further insight into the distribution and potential risk factors associated with endoparasitic infections, as well as the zoonotic potential these parasites may present.

Gastrointestinal parasitism is a health issue in livestock, particularly in non-intensive farming systems. This research evaluated the prevalence and risk factors associated with gastrointestinal helminths in goats from three ecosystems in Peru: the Andean shrubland (Ancash), dry forest (Lambayeque), and coastal valley (Lima). The study used a cross-sectional design, with random sampling of goats from extensive production systems in each ecosystem. A total of 819 fecal samples were collected and analyzed using qualitative and quantitative parasitological methods. Additionally, coproculture was performed to identify infective larvae of nematodes. The FAMACHA© index was used to assess anemia levels, while body condition scores were recorded to evaluate the nutritional status of the animals. The highest prevalence was recorded in the Andean shrubland (74.2%), followed by the dry forest (63.1%), whereas the coastal valley had the lowest prevalence (59.3%). The most frequently identified helminths were strongyle-type eggs (49.9%) and Skrjabinema sp. (33.7%), while Moniezia sp. (5.4%) and Fasciola hepatica (1.1%) were detected at lower frequencies. The identification of L3 infective larvae of Haemonchus sp., Trichostrongylus sp., Cooperia sp., Strongyloides sp., Oesophagostomum sp., Bunostomum sp., and Teladorsagia sp. highlighted the diversity of gastrointestinal nematodes affecting goats in Peru. Multivariable analysis revealed that anemia (FAMACHA ≥ 3; PR = 1.14), poor body condition (BCS 1–2; PR = 1.03), and age (2–6 teeths or full dentition; PR = 1.12 and 1.08, respectively) were associated with increased infection risk. Males had lower prevalence than females (PR = 0.80), and goats raised in the dry forest and coastal valley had lower risk than those from the Andean shrubland. These findings highlight the influence of physiological status and environmental conditions on parasite burden in goat herds.

From February 2022 to April 2023, a cross-sectional study on dog gastrointestinal parasites was conducted in Bishoftu, Dukem, Addis Ababa, and Sheno, Central Ethiopia, with the aim of estimating the prevalence and evaluating risk factors. A total of 701 faecal samples were collected and processed using floatation and McMaster techniques. In dogs that were investigated, the overall prevalence of gastrointestinal parasites was 53.1% (372/701). Nematode (28.2%), cestode (8.4%), and protozoan (5.6%) parasite infections were detected in dogs in both single (42.2%) and combined (10.8%) infections. With respective prevalences of 16%, 9.8%, 5%, 3.9%, and 3.1% Ancylostoma spp., Toxocara canis , Dipylidium caninum , Giardia spp., and Taenia/Echinococcus spp. were the most common parasites. The prevalence of gastrointestinal parasites was significantly higher (P<0.05) in female dogs (73.8%, OR = 0.4), adult dogs (55.3%, OR = 0.4), dogs that were given raw food (57.9%, OR = 2.7), and dogs kept free outdoor (60.9%, OR = 2.4). The incidence of gastrointestinal parasites was also higher in dogs with diarrheal faecal consistency (89.1%, OR = 9.1) and dogs from highland areas (62.1%, OR = 1.8). In contrast, statistically significant variation in the prevalence of gastrointestinal parasites was not recorded among dogs of different breeds. The current study found that dogs in the studied locations had a high overall prevalence of gastrointestinal parasites. In conclusion, gastrointestinal parasites in dogs have the potential to pose a serious threat to public health, so addressing this issue requires a unified approach. Therefore, it is necessary to conduct detailed epidemiological and genetic research on dog parasites in vast study regions across various agro-ecologies zones and seasons in Ethiopia. Additionally, it is crucial to raise public awareness of the prevalence, effects on public health, and financial implications of dog gastrointestinal parasites in Ethiopia.

Humans and dogs are the two major hosts of Strongyloides stercoralis , an intestinal parasitic nematode. To better understand the phylogenetic relationships among S . stercoralis isolates infecting humans and dogs and to assess the zoonotic potential of this parasite, we analyzed mitochondrial Cox1, nuclear 18S rDNA, 28S rDNA, and a major sperm protein domain-containing protein genes. Overall, our analyses indicated the presence of two distinct lineages of S . stercoralis (referred to as type A and type B). While type A parasites were isolated both from humans and dogs in different countries, type B parasites were found exclusively in dogs, indicating that the type B has not adapted to infect humans. These epidemiological data, together with the close phylogenetic relationship of S . stercoralis with S . procyonis , a Strongyloides parasite of raccoons, possibly indicates that S . stercoralis originally evolved as a canid parasite, and later spread into humans. The inability to infect humans might be an ancestral character of this species and the type B might be surmised to be an origin population from which human-infecting strains are derived.

Background The objectives of this study were to evaluate the prevalence and infection intensity of intestinal parasites in different dog and cat populations in Crete, Greece, estimate the zoonotic risk and identify risk factors. Methods Faecal samples from shelter, household and shepherd dogs and shelter and household cats were analyzed using sedimentation/flotation techniques. Giardia and Cryptosporidium were detected by a quantitative direct immunofluorescence assay (IFA). PCR and sequencing was performed to evaluate the zoonotic potential of Giardia and Cryptosporidium positive samples. Results Totals of 879 dog and 264 cat faecal samples were examined. In dogs, the overall prevalence was 25.2% (CI: 22.4–28.1) for Giardia spp.; 9.2% (CI: 7.3–11.1) for Ancylostoma/Uncinaria spp.; 7.6% (CI: 5.9–9.4) for Toxocara spp.; 5.9% (CI: 4.4–7.5) for Cryptosporidium spp.; 4.6% (CI: 3.2–5.9) for Cystoisospora spp.; 2.7% (CI: 1.7–3.8) for Toxascaris leonina ; 1.7% (CI: 0.9–2.6) for Capillaria spp.; 0.8% (CI: 0.2–1.4) for taeniid eggs; 0.2% (CI: 0–0.5) for Dipylidium caninum ; and 0.1% (CI: 0–0.3) for Strongyloides stercoralis. In cats, the prevalence was 20.5% (CI: 15.6–25.3) for Giardia spp.; 9.5% (CI: 5.9–13.0) for Cystoisospora spp.; 8.3% (CI: 5.0–11.7) for Toxocara spp.; 7.6% (CI: 4.4–10.8) for Ancylostoma/Uncinaria spp.; 6.8% (CI: 3.8–9.9) for Cryptosporidium spp.; 4.2% (CI: 1.8–6.6) for Capillaria spp.; 0.8% (CI: 0–1.8) for taeniid eggs; and 0.4% (CI: 0–1.1) for Hammondia/Toxoplasma . Concerning the risk factors evaluated, there was a negative association between age and Giardia infection and between age and T. leonina infection intensity for dogs. Sequencing results revealed the presence of mainly animal-specific G. duodenalis assemblages C and D in dogs and assemblages F, C and BIV-like in cats, with only a limited number of (co-)infections with assemblage A. As for Cryptosporidium , the dog-specific C. canis and the pig-specific C. scrofarum were detected in dogs and the cat-specific C. felis was detected in cats. Conclusions High levels of parasitism in both dogs and cats were recorded. Giardia was the most prevalent parasite in all dog and cat populations except for shepherd dogs. Genotyping results suggest a limited zoonotic risk of Giardia and Cryptosporidium infections from dogs and cats in Crete. Taeniid eggs were more prevalent in shepherd dogs suggesting access to carcasses and posing a threat for cystic echinococcosis transmission. Infection rates of Toxocara spp. in both dogs and cats show that companion animals could be a significant source of infection to humans.

Background Companion animals are infected with a range of helminth and protozoan parasites which can have a significant effect on health and welfare. While several diagnostic techniques are available to detect parasitic infection, they all vary in sensitivity and specificity. This study aims to estimate the diagnostic performance of the OvaCyte™ Pet Analyser by comparing it with established benchmarks commonly used in reference laboratories. Methods A total of 141 canine faecal samples, containing at least one species of parasite after screening using double centrifugation, were tested using four index tests: centrifugal flotation (faeces weighing either 1 g or 2 g), passive flotation, and the OvaCyte™ technique. The true status of each sample was determined on the basis of the initial screening test and the aggregated result of the four index tests. Sensitivity and specificity were calculated for each of the four index tests. Results The OvaCyte™ Pet Analyser displayed high sensitivity ranging from 90% to 100% in detecting various parasite species in canines. Its sensitivity for roundworm and hookworm detection differed significantly from centrifugal flotation using 1 g and passive flotation techniques ( P  < 0.05). The OvaCyte™ demonstrated higher sensitivity in detecting Cystoisospora spp. (90%) and Capillaria spp. (100%) compared to all flotation methods ( P  < 0.001), though it showed slightly lower specificity than the other techniques. Conclusions These results highlight the variability in sensitivity across different diagnostic methods, underscoring the importance of selecting the most reliable technique for accurate parasite detection in veterinary practice. However, the OvaCyte™ Pet Analyser exhibits an elevated level of sensitivity compared to other techniques. Graphical Abstract