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result(s) for
"Laboratory tests"
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Routine Laboratory Blood Tests Predict SARS-CoV-2 Infection Using Machine Learning
2020
Abstract
Background
Accurate diagnostic strategies to identify SARS-CoV-2 positive individuals rapidly for management of patient care and protection of health care personnel are urgently needed. The predominant diagnostic test is viral RNA detection by RT-PCR from nasopharyngeal swabs specimens, however the results are not promptly obtainable in all patient care locations. Routine laboratory testing, in contrast, is readily available with a turn-around time (TAT) usually within 1-2 hours.
Method
We developed a machine learning model incorporating patient demographic features (age, sex, race) with 27 routine laboratory tests to predict an individual’s SARS-CoV-2 infection status. Laboratory testing results obtained within 2 days before the release of SARS-CoV-2 RT-PCR result were used to train a gradient boosting decision tree (GBDT) model from 3,356 SARS-CoV-2 RT-PCR tested patients (1,402 positive and 1,954 negative) evaluated at a metropolitan hospital.
Results
The model achieved an area under the receiver operating characteristic curve (AUC) of 0.854 (95% CI: 0.829-0.878). Application of this model to an independent patient dataset from a separate hospital resulted in a comparable AUC (0.838), validating the generalization of its use. Moreover, our model predicted initial SARS-CoV-2 RT-PCR positivity in 66% individuals whose RT-PCR result changed from negative to positive within 2 days.
Conclusion
This model employing routine laboratory test results offers opportunities for early and rapid identification of high-risk SARS-CoV-2 infected patients before their RT-PCR results are available. It may play an important role in assisting the identification of SARS-CoV-2 infected patients in areas where RT-PCR testing is not accessible due to financial or supply constraints.
Journal Article
The Impact of Health Information Sharing on Duplicate Testing
by
Ayabakan, Sezgin
,
Bardhan, Indranil
,
Zheng, Zhiqiang (Eric)
in
Health care
,
Health care policy
,
Hospitals
2017
Recent healthcare reform has focused on reducing excessive waste in the U.S. healthcare system, with duplicate testing being one of the main culprits. We explore the factors associated with duplicate tests when patients utilize healthcare services from multiple providers, and yet information sharing across these providers is fragmented. We hypothesize that implementation of health information sharing technologies will reduce the duplication rate more for radiology tests compared to laboratory tests, especially when health information sharing technologies are implemented across disparate provider organizations. We utilize a unique panel data set consisting of 39,600 patient visits from 2005 to 2012, across outpatient clinics of 68 hospitals, to test our hypotheses. We apply a quasi-experimental approach to investigate the impact of health information sharing technologies on the duplicate testing rate. Our results indicate that usage of information sharing technologies across health organizations is associated with lower duplication rates, and the extent of reduction in duplicate tests is more pronounced among radiology tests compared to laboratory tests. Our results support the need for implementation of health information exchanges as a potential solution to reduce the incidence of duplicate tests.
Journal Article
Patient and Health Care Provider Perspectives on Patient Access to Test Results via Web Portals: Scoping Review
2023
A frequently used feature of electronic patient portals is the viewing of test results. Research on patient portals is abundant and offers evidence to help portal implementers make policy and practice decisions. In contrast, no comparable comprehensive summary of research addresses the direct release of and patient access to test results.
This scoping review aims to analyze and synthesize published research focused on patient and health care provider perspectives on the direct release of laboratory, imaging, and radiology results to patients via web portals.
PRISMA (Preferred Reporting Items for Systematic Reviews and Meta-Analyses) guidelines were followed. Searches were conducted in CINAHL, MEDLINE, and other databases. Citations were screened in Covidence using the inclusion and exclusion criteria. Primary studies that focused on patient and health care provider perspectives on patient access to laboratory and imaging results via web portals were included. An updated search was conducted up to August 2023. Our review included 27 articles-20 examining patient views, 3 examining provider views, and 4 examining both patient and provider views. Data extraction and inductive data analysis were informed by sensitizing concepts from sociomaterial perspectives, and 15 themes were generated.
Patient perspectives (24 papers) were synthesized using nine themes: (1) patterns of use and patient characteristics; (2) emotional response when viewing the results and uncertainty about their implications; (3) understanding test results; (4) preferences for mode and timing of result release; (5). information seeking and patients' actions motivated by viewing results via a portal; (6) contemplating changes in behavior and managing own health; (7) benefits of accessing test results via a portal; (8) limitations of accessing test results via a portal; and (9) suggestions for portal improvement. Health care provider perspectives (7 papers) were synthetized into six themes: (1) providers' view of benefits of patient access to results via the portal; (2) effects on health care provider workload; (3) concerns about patient anxiety; (4) timing of result release into the patient portal; (5) the method of result release into the patient portal: manual versus automatic release; and (6) the effects of hospital health information technology system on patient quality outcomes.
The timing of the release of test results emerged as a particularly important topic. In some countries, the policy context may motivate immediate release of most tests directly into patient portals. However, our findings aim to make policy makers, health administrators, and other stakeholders aware of factors to consider when making decisions about the timing of result release. This review is sensitive to the characteristics of patient populations and portal technology and can inform result release framework policies. The findings are timely, as patient portals have become more common internationally.
Journal Article
Research on surrounding rock deformation characteristics and support optimization measures for tunnel TBM crossing through fault fracture zones
2026
The tunnel boring machine (TBM) is a core equipment for mountain tunnel engineering, but it often faces problems such as surrounding rock deformation, collapse, and TBM entrapment when crossing fault fracture zones. Taking the TBM crossing of F1 fault in the Pilot Tunnel of Daliangshan No.1 Tunnel as the engineering case, this study adopted a combined method of laboratory tests, numerical simulation, and field monitoring to clarify the deformation characteristics of surrounding rock during TBM’s passage through the fault fracture zone, and proposed and verified effective reinforcement measures. The results show that the tunnel deformation in the F1 fault zone presents a \"larger in the middle and smaller at both ends\" pattern. When tunneling reached the fault core area, the maximum vertical vault settlement was 92 mm and the maximum ground settlement was 42 mm, with the vault settlement response occurring earlier than the sidewall springline deformation. Away from the fault zone, the stress release of surrounding rock stabilized, with a settlement increment of less than 5 mm. The comprehensive reinforcement system proposed for problems such as fractured surrounding rock in the fault zone and insufficient gripper shoe bearing capacity achieved remarkable effects. After reinforcement, the maximum vertical vault settlement and ground settlement of all monitored sections were reduced to approximately 17 mm and 7 mm, respectively, decreasing by 79.3% and 83.3% compared with those before reinforcement. This effectively mitigated construction risks and ensured continuous TBM advancement. The research findings can provide data support and technical reference for TBM construction in mountain tunnels under similar \"weathered rock + fault fracture zone\" conditions.
Journal Article
Stability Analysis of Rock Structure in Large Slopes and Open-Pit Mine: Numerical and Experimental Fault Modeling
by
Azarfar, Babak
,
Sattarvand, Javad
,
Abbasi, Behrooz
in
Calibration
,
Computer simulation
,
Controlled conditions
2019
Deep open-pit mines and large rock slopes expose many diverse rock lithologies and geological structures (e.g., faults, bedding planes) that may reduce the integrity of slopes. Numerical modeling is a powerful tool for simulating these structures; however, there are few guidelines and methods for calibrating/validating and implementing faults in a numerical model. This paper presents a novel laboratory method to calibrate numerical models and highlights the challenges in simulating faults. One of the main issues in reliable modeling of faulted rock structure is the scarcity of experimental analyses in the laboratory under the controlled conditions. Moreover, a comprehensive evaluation of the effect of using the conventional fault modeling methods on the stability of rock structures is required, as well as a benchmarking between theoretical and experimental results. This research combines theory and experiment, to fill the existing gaps, using numerical simulation and laboratory measurements. Using FLAC3D software, the sensitivity and comparative analyses are carried out for the numerical simulations to investigate the stability of rock slopes on large and small scales (overall open-pit slope and bench slope), and the fault zones. The weak zone (WZ), ubiquitous-joint (UJ), and interface (IF) techniques are the widely used methods in the modeling to capture fault slip mechanisms. The factor of safety (FOS) of the slope is monitored upon variation of the design parameters, such as fault and rock mass mechanical properties, fault types, and modeling framework (e.g., mesh density, convergence ratio). In addition, parameters such as shear displacement and shear stress are investigated to deduce the failure mechanism of the studied models. Finally, laboratory tests were performed to calibrate the modeling results and approximate the agreement between theoretical and experimental results. The results of sensitivity analysis showed that choosing an adequately low convergence ratio is critical for estimating FOS. However, beyond a certain convergence ratio, below 10−7, this change is negligible (less than 5%). The results of mesh density sensitivity analysis indicate that the FOS values are insensitive to the mesh density in the WZ method (less than 5% change in FOS), the IF method shows the median sensitivity (5–12% change in FOS), and the UJ method is the most sensitive (FOS values improves by ~ 31%). Comparison between laboratory test and numerical modeling (FOSlab = 1.71, FOSWZ = 1.51, FOSIF = 1.62, and FOSUJ = 1.76) indicates a good agreement between the UJ and IF methods and the laboratory model (~ 3–5% discrepancy). It needs to be mentioned that these analyses/tests are not to favor one method over the other, but rather to emphasize the pros and cons of each within the assumptions of this study.
Journal Article
Contemporary laboratory assessment of acute cardiorenal syndrome for early diagnosis: A call for action
by
Jefferies, John L.
,
Kovesdy, Csaba P.
,
Ronco, Claudio
in
Acute Disease
,
Acute Kidney Injury - diagnosis
,
Biomarkers
2023
Acute cardiorenal syndrome (CRS), categorized as CRS type 1 and 3, is defined by the interplay of acute kidney injury or dysfunction and acute cardiac disease. For optimized diagnosis and management of CRS, strategies targeting multi-organ dysfunction must be adopted. Early diagnosis of acute CRS is important to enable timely initiation of appropriate treatment to prevent serious morbidity and mortality; however, traditional biomarkers are suboptimal. Over the past 2 decades, numerous biomarkers have been investigated for a better and more rapid diagnosis of CRS. Yet, the uptake of these contemporary biomarkers has been slow, possibly owing to the use of imperfect gold-standard reference tests. We believe that there is now scope for use of contemporary laboratory test panels to improve the diagnosis of acute CRS. In this review, we briefly discuss a proposed set of biomarkers for the diagnosis of type 1 and type 3 CRS.
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Journal Article
Biomethane Potential Test: Influence of Inoculum and the Digestion System
by
Hülsemann, Benedikt
,
Müller, Joachim
,
Zhou, Lijun
in
Alternative energy sources
,
anaerobic digestion
,
biochemical methane potential test
2020
High precision of measurement of methane potential is important for the economic operation of biogas plants in the future. The biochemical methane potential (BMP) test based on the VDI 4630 protocol is the state-of-the-art method to determine the methane potential in Germany. The coefficient of variation (CV) of methane yield was >10% in several previous inter-laboratory tests. The aim of this work was to investigate the effects of inoculum and the digestion system on the measurement variability. Methane yield and methane percentage of five substrates were investigated in a Hohenheim biogas yield test (D-HBT) by using five inocula, which were used several times in inter- laboratory tests. The same substrates and inocula were also tested in other digestion systems. To control the quality of the inocula, the effect of adding trace elements (TE) and the microbial community was investigated. Adding TE had no influence for the selected, well- supplied inocula and the community composition depended on the source of the inocula. The CV of the specific methane yield was <4.8% by using different inocula in one D-HBT (D-HBT1) and <12.8% by using different digestion systems compared to D-HBT1. Incubation time between 7 and 14 days resulted in a deviation in CV of <4.8%.
Journal Article
Lab Non Destructive Test to Analyze the Effect of Corrosion on Ground Penetrating Radar Scans
by
Pérez-Gracia, Vega
,
Sossa, Viviana
,
González-Drigo, Ramón
in
Amplitudes
,
Coastal structures
,
Coastal zone
2019
Corrosion is a significant damage in many reinforced concrete structures, mainly in coastal areas. The oxidation of embedded iron or steel elements degrades rebar, producing a porous layer not adhered to the metallic surface. This process could completely destroy rebar. In addition, the concrete around the metallic targets is also damaged, and a dense grid of fissures appears around the oxidized elements. The evaluation of corrosion is difficult in early stages, because damage is usually hidden. Non-destructive testing measurements, based on non-destructive testing (NDT) electric and magnetic surveys, could detect damage as consequence of corrosion. The work presented in this paper is based in several laboratory tests, which are centered in defining the effect of different corrosion stage on ground penetrating radar (GPR) signals. The analysis focuses on the evaluation of the reflected wave amplitude and its behavior. The results indicated that an accurate analysis of amplitude decay and intensity could most likely reveal an approach to the state of degradation of the embedded metallic targets because GPR images exhibit characteristics that depend on the effects of the oxidized rebar and the damaged concrete. These characteristics could be detected and measured in some cases. One important feature is referred to as the reflected wave amplitude. In the case of corroded targets, this amplitude is lower than in the case of reflection on non-oxidized surfaces. Additionally, in some cases, a blurred image appears related to high corrosion. The results of the tests highlight the higher amplitude decay of the cases of specimens with corroded elements.
Journal Article
Field and Laboratory Wear Tests of Machine Components Used for Renovation of Dirt Roads—A Case Study
by
Ulbrich, Dariusz
,
Selech, Jarosław
,
Majchrzycki, Wiktor
in
Composite materials
,
Dirt
,
Field study
2023
Renovation of dirt roads requires a reliable and durable work tool. This article includes the methodology of field and bench tests as well as the results of these tests and conclusions for cutters used for dirt road renovation. The main novelty of the research presented in this article was to determine the wear mechanisms occurring during field and laboratory tests, to determine the differences in wear levels and the cost of renovation of one kilometer of dirt road. Calculations of the efficiency of replacing these working elements and the cost of operating various cutters per km are also presented. The lowest mass loss was characterized by milling cutters Ø25 mm mounted on an expansion sleeve and amounted to 130 g. The dominant wear mechanism that was observed after the renovation of dirt roads was micro-scraping and micro-bruising. For this variant, the cost per 1 km of road renovation was also the lowest and amounted to about PLN 2.
Journal Article