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For count data, though a zero-inflated model can work perfectly well with an excess of zeroes and the generalized Poisson model can tackle over- or under-dispersion, most models cannot simultaneously deal with both zero-inflated or zero-deflated data and over- or under-dispersion. Ear diseases are important in healthcare, and falls into this kind of count data. This paper introduces a generalized Poisson Hurdle model that work with count data of both too many/few zeroes and a sample variance not equal to the mean. To estimate parameters, we use the generalized method of moments. In addition, the asymptotic normality and efficiency of these estimators are established. Moreover, this model is applied to ear disease using data gained from the New South Wales Health Research Council in 1990. This model performs better than both the generalized Poisson model and the Hurdle model.

In recent mutation studies, analyses based on protein domain positions are gaining popularity over gene-centric approaches since the latter have limitations in considering the functional context that the position of the mutation provides. This presents a large-scale simultaneous inference problem, with hundreds of hypothesis tests to consider at the same time. This article aims to select significant mutation counts while controlling a given level of Type I error via False Discovery Rate (FDR) procedures. One main assumption is that the mutation counts follow a zero-inflated model in order to account for the true zeros in the count model and the excess zeros. The class of models considered is the Zero-inflated Generalized Poisson (ZIGP) distribution. Furthermore, we assumed that there exists a cut-off value such that smaller counts than this value are generated from the null distribution. We present several data-dependent methods to determine the cut-off value. We also consider a two-stage procedure based on screening process so that the number of mutations exceeding a certain value should be considered as significant mutations. Simulated and protein domain data sets are used to illustrate this procedure in estimation of the empirical null using a mixture of discrete distributions. Overall, while maintaining control of the FDR, the proposed two-stage testing procedure has superior empirical power.

Many studies have reported that exposure to air pollution increases the likelihood of acquiring allergic rhinitis (AR). This study investigated associations between short-term air pollution exposure and AR outpatient visits. The Department of Otorhinolaryngology, Affiliated Hospital of Hangzhou Normal University provided AR outpatient data from January 1, 2019 to December 31, 2021. Daily air quality information for that period was gathered from the Hangzhou Air Quality Inspection Station. We used the Poisson's generalized additive model (GAM) to investigate relationships between daily outpatient AR visits and air pollution, and investigated lag-exposure relationships across days. Subgroup analyses were performed by age (adult (>18 years) and non-adult (<18 years)) and sex (male and female). We recorded 20,653 instances of AR during the study period. Each 10 g/m increase in fine particulate matter (PM10 and PM2.5) and carbon monoxide (CO) concentrations was associated with significant increases in AR outpatient Visits. The relative risks (RR) were: 1.007 (95% confidence interval (CI): 1.001-1.013), 1.026 (95% CI: 1.008-1.413), and 1.019 (95% CI: 1.008-1.047). AR visits were more likely due to elevated PM2.5, PM10, and CO levels. Additionally, children were more affected than adults. To better understand the possible effects of air pollution on AR, short-term exposure to ambient air pollution (PM2.5, PM10, and CO) may be linked to increased daily outpatient AR visits.

Reproduction by individuals is typically recorded as count data (e.g., number of fledglings from a nest or inflorescences on a plant) and commonly modeled using Poisson or negative binomial distributions, which assume that variance is greater than or equal to the mean. However, distributions of reproductive effort are often underdispersed (i.e., variance < mean). When used in hypothesis tests, models that ignore underdispersion will be overly conservative and may fail to detect significant patterns. Here we show that generalized Poisson (GP) and Conway-Maxwell-Poisson (CMP) distributions are better choices for modeling reproductive effort because they can handle both overdispersion and underdispersion; we provide examples of how ecologists can use GP and CMP distributions in generalized linear models (GLMs) and generalized linear mixed models (GLMMs) to quantify patterns in reproduction. Using a new R package, glmmTMB, we construct GLMMs to investigate how rainfall and population density influence the number of fledglings in the warbler Oreothlypis celata and how flowering rate of Heliconia acuminata differs between fragmented and continuous forest. We also demonstrate how to deal with zero-inflation, which occurs when there are more zeros than expected in the distribution, e.g., due to complete reproductive failure by some individuals.

Crime rate is the number of reported crimes divided by total population. Several factors could contribute the variability of crime rates among areas. This study aims to model the relationship between crime rates among regencies and cities in the East Java Province (Indonesia) and some potentially explanatory variables based on Statistics Indonesia publication in 2020. The crime rate in the East Java Province was consistently at the top three after DKI Jakarta and North Sumatra during 2017 to 2019. Therefore, it is interesting for us to study further about the crime rate in the East Java. Our preliminary analysis indicates that there is an overdispersion in our sample data. To overcome the overdispersion, we fit Generalized Poisson and Negative Binomial regression. The ratio of deviance and degree of freedom based on Negative Binomial is slightly smaller (1.38) than Generalized Poisson (1.99). The results indicate that Negative Binomial and Generalized Poisson regression, compared to standard Poisson regression, are relatively fit to model our crime rate data. Some factors which contribute significantly (α=0.05) for the crime rate in the East Java Province under Negative Binomial as well as Generalized Poisson regression are percentage of poor people, number of households, unemployment rate, and percentage of expenditure.

Count data arise frequently in ecological analyses, but regularly violate the equi-dispersion constraint imposed by the most popular distribution for analyzing these data, the Poisson distribution. Several approaches for addressing over-dispersion have been developed (e.g., negative binomial distribution), but methods for including both under-dispersion and over-dispersion have been largely overlooked. We provide three specific examples drawn from life-history theory, spatial ecology, and community ecology, and illustrate the use of the Conway-Maxwell-Poisson (CMP) distribution as compared to other common models for count data. We find that where equi-dispersion is violated, the CMP distribution performs significantly better than the Poisson distribution, as assessed by information criteria that account for the CMP's additional distribution parameter. The Conway-Maxwell-Poisson distribution has seen rapid development in other fields such as risk analysis and linguistics, but is relatively unknown in the ecological literature. In addition to providing a more flexible exponential distribution for count data that is easily integrated into generalized linear models, the CMP allows ecologists to focus on the magnitude of under- or over-dispersion as opposed to the simple rejection of the equi-dispersion null hypothesis. By demonstrating its suitability in a variety of common ecological applications, we hope to encourage its wider adoption as a flexible alternative to the Poisson.

Poisson regression is a popular tool for modeling count data and is applied in a vast array of applications from the social to the physical sciences and beyond. Real data, however, are often over- or under-dispersed and, thus, not conducive to Poisson regression. We propose a regression model based on the Conway—Maxwell-Poisson (COM-Poisson) distribution to address this problem. The COM-Poisson regression generalizes the well-known Poisson and logistic regression models, and is suitable for fitting count data with a wide range of dispersion levels. With a GLM approach that takes advantage of exponential family properties, we discuss model estimation, inference, diagnostics, and interpretation, and present a test for determining the need for a COM-Poisson regression over a standard Poisson regression. We compare the COM-Poisson to several alternatives and illustrate its advantages and usefulness using three data sets with varying dispersion.

To model correlated bivariate count data with extra zero observations, this paper proposes two new bivariate zero-inflated generalized Poisson (ZIGP) distributions by incorporating a multiplicative factor (or dependency parameter) λ, named as Type I and Type II bivariate ZIGP distributions, respectively. The proposed distributions possess a flexible correlation structure and can be used to fit either positively or negatively correlated and either over- or under-dispersed count data, comparing to the existing models that can only fit positively correlated count data with over-dispersion. The two marginal distributions of Type I bivariate ZIGP share a common parameter of zero inflation while the two marginal distributions of Type II bivariate ZIGP have their own parameters of zero inflation, resulting in a much wider range of applications. The important distributional properties are explored and some useful statistical inference methods including maximum likelihood estimations of parameters, standard errors estimation, bootstrap confidence intervals and related testing hypotheses are developed for the two distributions. A real data are thoroughly analyzed by using the proposed distributions and statistical methods. Several simulation studies are conducted to evaluate the performance of the proposed methods.

The δ -shock model is one of the basic shock models which has a wide range of applications in reliability, finance and related fields. In existing literature, it is assumed that the recovery time of a system from the damage induced by a shock is constant as well as the shocks magnitude. However, as technical systems gradually deteriorate with time, it takes more time to recover from this damage, whereas the larger magnitude of a shock also results in the same effect. Therefore, in this paper, we introduce a general δ -shock model when the recovery time depends on both the arrival times and the magnitudes of shocks. Moreover, we also consider a more general and flexible shock process, namely, the Poisson generalized gamma process. It includes the homogeneous Poisson process, the non-homogeneous Poisson process, the Pólya process and the generalized Pólya process as the particular cases. For the defined survival model, we derive the relationships for the survival function and the mean lifetime and study some relevant stochastic properties. As an application, an example of the corresponding optimal replacement policy is discussed.