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"seedling"
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Effects of drought stress and water recovery on physiological responses and gene expression in maize seedlings
2018
Background
Drought is one of the major factors limiting global maize production. Exposure to long-term drought conditions inhibits growth and leads to yield losses. Although several drought-responsive genes have been identified and functionally analyzed, the mechanisms underlying responses to drought and water recovery treatments have not been fully elucidated. To characterize how maize seedling respond to drought stress at the transcriptional level, we analyzed physiological responses and differentially expressed genes (DEGs) in the inbred line B73 under water deficit and recovery conditions.
Results
The data for relative leaf water content, leaf size, and photosynthesis-related parameters indicated that drought stress significantly repressed maize seedling growth. Further RNA sequencing analysis revealed that 6107 DEGs were responsive to drought stress and water recovery, with more down-regulated than up-regulated genes. Among the DEGs, the photosynthesis- and hormone-related genes were enriched in responses to drought stress and re-watering. Additionally, transcription factor genes from 37 families were differentially expressed among the three analyzed time-points. Gene ontology enrichment analyses of the DEGs indicated that 50 GO terms, including those related to photosynthesis, carbohydrate metabolism, oxidoreductase activities, nutrient metabolism and other drought-responsive pathways, were over-represented in the drought-treated seedlings. The content of gibberellin in drought treatment seedlings was decreased compared to that of control seedlings, while abscisic acid showed accumulated in the drought treated plants. The deep analysis of DEGs related to cell wall development indicated that these genes were prone to be down-regulated at drought treatment stage.
Conclusions
Many genes that are differentially expressed in responses to drought stress and water recovery conditions affect photosynthetic systems and hormone biosynthesis. The identified DEGs, especially those encoding transcription factors, represent potential targets for developing drought-tolerant maize lines.
Journal Article
AUX/LAX Genes Encode a Family of Auxin Influx Transporters That Perform Distinct Functions during Arabidopsis Development
2012
Auxin transport, which is mediated by specialized influx and efflux carriers, plays a major role in many aspects of plant growth and development. AUXIN1 (AUX1) has been demonstrated to encode a high-affinity auxin influx carrier. In Arabidopsis thaliana, AUX1 belongs to a small multigene family comprising four highly conserved genes (i.e., AUX1 and LIKE AUX1 [LAX] genes LAX1, LAX2, and LAX3). We report that all four members of this AUX/LAX family display auxin uptake functions. Despite the conservation of their biochemical function, AUX1, LAX1, and LAX3 have been described to regulate distinct auxin-dependent developmental processes. Here, we report that LAX2 regulates vascular patterning in cotyledons. We also describe how regulatory and coding sequences of AUX/LAX genes have undergone subfunctionalization based on their distinct patterns of spatial expression and the inability of LAX sequences to rescue aux1 mutant phenotypes, respectively. Despite their high sequence similarity at the protein level, transgenic studies reveal that LAX proteins are not correctly targeted in the AUX1 expression domain. Domain swapping studies suggest that the N-terminal half of AUX1 is essential for correct LAX localization. We conclude that Arabidopsis AUX/LAX genes encode a family of auxin influx transporters that perform distinct developmental functions and have evolved distinct regulatory mechanisms.
Journal Article
Effects of cadmium stress on growth and physiological characteristics of sassafras seedlings
2021
The effects of cadmium stress on the growth and physiological characteristics of
Sassafras tzumu
Hemsl
.
were studied in pot experiments. Five Cd levels were tested [CT(Control Treatment) : 0 mg/kg, Cd5: 5 mg/kg, Cd20: 20 mg/kg, Cd50: 50 mg/kg, and Cd100: 100 mg/kg]. The growth and physiological characteristics of the sassafras seedlings in each level were measured. The results showed that soil Cd had negative influences on sassafras growth and reduced the net growth of plant height and the biomass of leaf, branch and root. Significant reductions were recorded in root biomass by 18.18%(Cd5), 27.35%(Cd20), 27.57%(Cd50) and 28.95%(Cd100). The contents of hydrogen peroxide decreased first then increased while malondialdehyde showed the opposite trend with increasing cadmium concentration. Decreases were found in hydrogen peroxide contents by 10.96%(Cd5), 11.82%(Cd20) and 7.02%(Cd50); increases were found in malondialdehyde contents by 15.47%(Cd5), 16.07%(Cd20) and 7.85%(Cd50), indicating that cadmium stress had a certain effect on the peroxidation of the inner cell membranes in the seedlings that resulted in damage to the cell membrane structure. Superoxide dismutase activity decreased among treatments by 17.05%(Cd5), 10,68%(Cd20), 20.85%(Cd50) and 8.91%(Cd100), while peroxidase activity increased steadily with increasing cadmium concentration; these results suggest that peroxidase is likely the main protective enzyme involved in the reactive oxygen removal system in sassafras seedlings. Upward trends were observed in proline content by 90.76%(Cd5), 74.36%(Cd20), 99.73%(Cd50) and 126.01%(Cd100). The increase in proline content with increasing cadmium concentration indicated that cadmium stress induced proline synthesis to resist osmotic stress in the seedlings. Compared to that in CT, the soluble sugar content declined under the different treatments by 32.84%(Cd5), 5.85%(Cd20), 25.55%(Cd50) and 38.69%(Cd100). Increases were observed in the soluble protein content by 2.34%(Cd5), 21.36%(Cd20), 53.15%(Cd50) and 24.22%(Cd100). At different levels of cadmium stress, the chlorophyll content in the seedlings first increased and then decreased, and it was higher in the Cd5 and Cd20 treatments than that in the CT treatment. These results reflected that cadmium had photosynthesis-promoting effects at low concentrations and photosynthesis-suppressing effects at high concentrations. The photosynthetic gas exchange parameters and photosynthetic light-response parameters showed downward trends with increasing cadmium concentration compared with those in CT; these results reflected the negative effects of cadmium stress on photosynthesis in sassafras seedlings.
Journal Article
Correction: Ecophysiological and Anatomical Mechanisms behind the Nurse Effect: Which Are More Important? A Multivariate Approach for Cactus Seedlings
in
Seedlings
2014
Responses of Opuntia streptacantha seedlings under combined water and light treatments at 15, 30 and 45 days. a) osmotic potential (MPa) and, b) titratable acidity (mmol equiv. Delgado-Sánchez P, Yáñez-Espinosa L, Jiménez-Bremont JF, Chapa-Vargas L, Flores J (2013) Ecophysiological and Anatomical Mechanisms behind the Nurse Effect: Which Are More Important? A Multivariate Approach for Cactus Seedlings.
Journal Article
Transcriptome and metabolome analysis of senescent rice (Oryza sativa L.) seeds: insights into the mechanism of germination vigor and seedling morphogenesis
2025
Seeds germination and seedlings growth are crucial factors in ensuring effective rice grain productivity. However, the mechanisms for maintaining seed vigor remains largely unknown. The seed aging phenomenon that occurs during storage poses a significant challenge to crop production, as it can lead to reduced germination rates and impaired seed vitality. The current study explored the underlying mechanisms that enable rice seeds to maintain high germination rates and seedling vigor after long - term storage. We employed transcriptomic and metabolomic techniques to identify metabolic changes and key genes associated with the aging of rice seeds during long - term storage. We utilized indicators such as imbibition rate (IR), germination rate (GR), mean germination time (MGT), germination coefficient (GC), germination index (GI), and germination potential (GP) to comprehensively assess germination activity. Traits including seedling emergence rate, seedling strength index, photosynthetic parameters, carbohydrate accumulation, and enzyme activity related to carbon metabolism were used to determine the impact of seed storage duration on seedling growth. Our research findings revealed significant differences in gene expression patterns and metabolic characteristics among seeds stored for different duration. Notably, IAA levels, the IAA/ABA ratio, and linoleic acid metabolism were identified as key factors affecting germination and seedling development. Results indicated that with the extension of storage duration, the germination potential and seedling development significantly declined. Current study provided a comprehensive understanding of the physiological and molecular mechanisms behind the germination and morphogenesis of rice seeds under different storage years. The insights gained from this study could be utilized to improve the storage and quality control of rice seeds, thereby ultimately enhancing agricultural productivity.
Journal Article
Cold Atmospheric Plasma-Activated Water Irrigation Induces Defense Hormone and Gene expression in Tomato seedlings
2019
Plants are very vulnerable to pathogen attacks and environmental stress as they are exposed to harsh environments in natural conditions. However, they have evolved a self-defense system whereby reactive oxygen and nitrogen species (RONS) act as double-edged swords by imposing (at higher concentration) and mitigating (at lower concentration) environmental stress. Cold plasma is emerging as a feasible option to produce a variety of RONS in a controlled manner when amalgamate with water. Cold plasma activated/treated water (PAW) contains a variety of RONS at concentrations, which may help to activate the plant’s defense system components. In the present study, we examine the effect of cold atmospheric-air jet plasma exposure (15 min, 30 min, and 60 min) on the water’s RONS level, as well as the impact of PAW irrigation, (assigned as 15PAW, 30PAW, and 60PAW) on tomato seedlings growth and defense response. We found that PAW irrigation (priming) upregulate seedlings growth, endogenous RONS, defense hormone (salicylic acid and jasmonic acid), and expression of key pathogenesis related (PR) gene. 30 min PAW contains RONS at concentrations which can induce non-toxic signaling. The present study suggests that PAW irrigation can be beneficial for agriculture as it modulates plant growth as well as immune response components.
Journal Article
Pathogens and insect herbivores drive rainforest plant diversity and composition
by
Gripenberg, Sofia
,
Gallery, Rachel E.
,
Narayan, Lakshmi
in
631/158/2450
,
631/158/2454
,
631/158/670
2014
Suppressing fungi in a tropical forest plant community lowers diversity by reducing the negative effects of density on seedling recruitment, and removing insects increases seedling survival and alters plant community composition; this demonstrates the crucial role of pathogens and insects in maintaining and structuring tropical forest plant diversity.
Plants' foes promote biodiversity
The exceptional species richness of tropical rainforests takes some explanation, and one explanation that is well favoured, the Janzen–Connell effect, sounds counterintuitive. It proposes that community diversity is promoted by natural enemies such as fungal pathogens and insect herbivores on the grounds that they prevent any individual host species from becoming too common. This paper reports on experiments in the Chiquibul Forest Reserve, Belize, in which fungi and insects were removed from forest plots in controlled conditions. The results confirm that the fungal pathogens can promote high plant diversity, and that insect herbivores alter the composition of these plant communities.
Tropical forests are important reservoirs of biodiversity
1
, but the processes that maintain this diversity remain poorly understood
2
. The Janzen–Connell hypothesis
3
,
4
suggests that specialized natural enemies such as insect herbivores and fungal pathogens maintain high diversity by elevating mortality when plant species occur at high density (negative density dependence; NDD). NDD has been detected widely in tropical forests
5
,
6
,
7
,
8
,
9
, but the prediction that NDD caused by insects and pathogens has a community-wide role in maintaining tropical plant diversity remains untested. We show experimentally that changes in plant diversity and species composition are caused by fungal pathogens and insect herbivores. Effective plant species richness increased across the seed-to-seedling transition, corresponding to large changes in species composition
5
. Treating seeds and young seedlings with fungicides significantly reduced the diversity of the seedling assemblage, consistent with the Janzen–Connell hypothesis. Although suppressing insect herbivores using insecticides did not alter species diversity, it greatly increased seedling recruitment and caused a marked shift in seedling species composition. Overall, seedling recruitment was significantly reduced at high conspecific seed densities and this NDD was greatest for the species that were most abundant as seeds. Suppressing fungi reduced the negative effects of density on recruitment, confirming that the diversity-enhancing effect of fungi is mediated by NDD. Our study provides an overall test of the Janzen–Connell hypothesis and demonstrates the crucial role that insects and pathogens have both in structuring tropical plant communities and in maintaining their remarkable diversity.
Journal Article
Design and experiment of an automatic seedling pick-up device for strawberry transplanter
2025
Mechanized strawberry transplanting is essential for improving operational efficiency and reducing seedling damage. To address these challenges, this study designed an automatic seedling pick-up device specifically for strawberry transplanters. Firstly, a novel clamp-type picking claw was developed based on the mechanical characteristics analysis of strawberry seedlings extracted from the tray. Based on the operational principles of whole-row seedling extraction, equidistant separation, and precise placement, the structure and working mechanism of the picking-and-placing device were designed. Secondly, a dynamic model of the picking claw was established for kinematic analysis based on coupled EDEM-RecurDyn simulation. The strawberry seedling picking process was conducted to investigate the effects of needle spacing, picking acceleration, and insertion depth on the integrity ratio of the plug seedlings. Finally, an orthogonal experimental design was employed, integrating single-factor tests, analysis of variance, response surface methodology, and multi-objective optimization. The results showed that the optimal seedling picking parameters were picking acceleration of 0.26 m/s
2
, claw spacing of 37 mm, and insertion depth of 85 mm. With these parameters, field validation experiments demonstrated a relative error of 4.29% between the measured and predicted plug seedling integrity ratio, which confirmed the reliability of the optimized parameters. This research significantly contributes to improving plug seedling integrity during mechanical transplanting and enhances the efficiency and effectiveness of strawberry transplantation.
Journal Article