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Systematic discovery of antiphage defense systems in the microbial pangenome
Systematic discovery of antiphage defense systems in the microbial pangenome
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Systematic discovery of antiphage defense systems in the microbial pangenome
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Systematic discovery of antiphage defense systems in the microbial pangenome
Systematic discovery of antiphage defense systems in the microbial pangenome

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Systematic discovery of antiphage defense systems in the microbial pangenome
Systematic discovery of antiphage defense systems in the microbial pangenome
Journal Article

Systematic discovery of antiphage defense systems in the microbial pangenome

2018
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Overview
To survive the attack of foreign invaders such as viruses and plasmids, bacteria and archaea fight back with immune systems that are usually clustered in “defense islands” in their genomes. Doron et al. took advantage of this property to map microbial defense systems systematically (see the Perspective by Kim). Candidate immune systems were then experimentally validated for their activities. Like well-known defense arsenals such as restriction-modification and CRISPR systems, these additional immune systems now require mechanistic investigation and could potentially be engineered into useful molecular tools in the future. Science , this issue p. eaar4120 ; see also p. 993 Bioinformatics and experimental validation identify nine antiphage and one antiplasmid immune defense systems in microbes. The arms race between bacteria and phages led to the development of sophisticated antiphage defense systems, including CRISPR-Cas and restriction-modification systems. Evidence suggests that known and unknown defense systems are located in “defense islands” in microbial genomes. Here, we comprehensively characterized the bacterial defensive arsenal by examining gene families that are clustered next to known defense genes in prokaryotic genomes. Candidate defense systems were systematically engineered and validated in model bacteria for their antiphage activities. We report nine previously unknown antiphage systems and one antiplasmid system that are widespread in microbes and strongly protect against foreign invaders. These include systems that adopted components of the bacterial flagella and condensin complexes. Our data also suggest a common, ancient ancestry of innate immunity components shared between animals, plants, and bacteria.