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Transcriptional coupling of distant regulatory genes in living embryos
by
Sisco, Zachary
, Bing, Xin Yang
, Batut, Philippe J.
, Levo, Michal
, Raimundo, João
, Ryabichko, Sergey
, Levine, Michael S.
, Gregor, Thomas
in
38/5
/ 38/71
/ 631/1647/2017/2214
/ 631/1647/245/2160
/ 631/208/200
/ 631/208/726/2102
/ 631/337/572
/ 64/24
/ Animal genetics
/ Animals
/ Biochemistry, Molecular Biology
/ Biophysics
/ Coupling
/ Development Biology
/ Drosophila - genetics
/ Embryonic Development
/ Embryos
/ Enhancer Elements, Genetic - genetics
/ Enhancers
/ Gene Expression Regulation, Developmental
/ Gene regulation
/ Genes
/ Genes, Regulator
/ Genetics
/ Genome
/ Genomes
/ Humanities and Social Sciences
/ Life Sciences
/ multidisciplinary
/ Perturbation
/ Prokaryotes
/ Promoter Regions, Genetic - genetics
/ Science
/ Science (multidisciplinary)
/ Single-Cell Analysis
/ Tethering
/ Topology
/ Transcription factors
/ Transcription initiation
/ Transcription, Genetic
2022
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Transcriptional coupling of distant regulatory genes in living embryos
by
Sisco, Zachary
, Bing, Xin Yang
, Batut, Philippe J.
, Levo, Michal
, Raimundo, João
, Ryabichko, Sergey
, Levine, Michael S.
, Gregor, Thomas
in
38/5
/ 38/71
/ 631/1647/2017/2214
/ 631/1647/245/2160
/ 631/208/200
/ 631/208/726/2102
/ 631/337/572
/ 64/24
/ Animal genetics
/ Animals
/ Biochemistry, Molecular Biology
/ Biophysics
/ Coupling
/ Development Biology
/ Drosophila - genetics
/ Embryonic Development
/ Embryos
/ Enhancer Elements, Genetic - genetics
/ Enhancers
/ Gene Expression Regulation, Developmental
/ Gene regulation
/ Genes
/ Genes, Regulator
/ Genetics
/ Genome
/ Genomes
/ Humanities and Social Sciences
/ Life Sciences
/ multidisciplinary
/ Perturbation
/ Prokaryotes
/ Promoter Regions, Genetic - genetics
/ Science
/ Science (multidisciplinary)
/ Single-Cell Analysis
/ Tethering
/ Topology
/ Transcription factors
/ Transcription initiation
/ Transcription, Genetic
2022
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Transcriptional coupling of distant regulatory genes in living embryos
by
Sisco, Zachary
, Bing, Xin Yang
, Batut, Philippe J.
, Levo, Michal
, Raimundo, João
, Ryabichko, Sergey
, Levine, Michael S.
, Gregor, Thomas
in
38/5
/ 38/71
/ 631/1647/2017/2214
/ 631/1647/245/2160
/ 631/208/200
/ 631/208/726/2102
/ 631/337/572
/ 64/24
/ Animal genetics
/ Animals
/ Biochemistry, Molecular Biology
/ Biophysics
/ Coupling
/ Development Biology
/ Drosophila - genetics
/ Embryonic Development
/ Embryos
/ Enhancer Elements, Genetic - genetics
/ Enhancers
/ Gene Expression Regulation, Developmental
/ Gene regulation
/ Genes
/ Genes, Regulator
/ Genetics
/ Genome
/ Genomes
/ Humanities and Social Sciences
/ Life Sciences
/ multidisciplinary
/ Perturbation
/ Prokaryotes
/ Promoter Regions, Genetic - genetics
/ Science
/ Science (multidisciplinary)
/ Single-Cell Analysis
/ Tethering
/ Topology
/ Transcription factors
/ Transcription initiation
/ Transcription, Genetic
2022
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Transcriptional coupling of distant regulatory genes in living embryos
Journal Article
Transcriptional coupling of distant regulatory genes in living embryos
2022
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Overview
The prevailing view of metazoan gene regulation is that individual genes are independently regulated by their own dedicated sets of transcriptional enhancers. Past studies have reported long-range gene–gene associations
1
–
3
, but their functional importance in regulating transcription remains unclear. Here we used quantitative single-cell live imaging methods to provide a demonstration of co-dependent transcriptional dynamics of genes separated by large genomic distances in living
Drosophila
embryos. We find extensive physical and functional associations of distant paralogous genes, including co-regulation by shared enhancers and co-transcriptional initiation over distances of nearly 250 kilobases. Regulatory interconnectivity depends on promoter-proximal tethering elements, and perturbations in these elements uncouple transcription and alter the bursting dynamics of distant genes, suggesting a role of genome topology in the formation and stability of co-transcriptional hubs. Transcriptional coupling is detected throughout the fly genome and encompasses a broad spectrum of conserved developmental processes, suggesting a general strategy for long-range integration of gene activity.
In
Drosophila
, there are extensive physical and functional associations of distant paralogous genes, including co-regulation by shared enhancers and co-transcriptional initiation over distances of nearly 250 kilobases.
Publisher
Nature Publishing Group UK,Nature Publishing Group
Subject
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