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Best practices and benchmarks for intact protein analysis for top-down mass spectrometry

by Agar, Jeffrey N , Sarin, Richa , Wolff, Jeremy J , Kelleher, Neil L , Rawlins, Catherine M , Paša-Tolić, Ljiljana , nelli, Luca , Aluri, Krishna C , Ge, Ying , Donnelly, Daniel P , Auclair, Jared R , Johnson, Kendall R , Chen, Bifan , Lantz, Carter , Tsybin, Yury O , Chamot-Rooke, Julia , Loo, Joseph A , Jung, Wonhyeuk , Koller, Antonius , Danis, Paul O , Ivanov, Alexander R , Whitelegge, Julian P , Campuzano, Iain D G , Smith, Lloyd M , Lippens, Jennifer L , Lin, Ziqing , Schachner, Luis F , DeHart, Caroline J

in Antibodies / Benchmarks / Consortia / Decision analysis / Decision trees / Mass spectrometry / Mass spectroscopy / Medical research / Membrane proteins / Proteins / Proteomics / Scientific imaging / Spectroscopy

2019

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2019

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2019

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Journal Article

Best practices and benchmarks for intact protein analysis for top-down mass spectrometry

Agar, Jeffrey N,

Sarin, Richa,

Wolff, Jeremy J,

Kelleher, Neil L,

Rawlins, Catherine M,

Paša-Tolić, Ljiljana,

nelli, Luca,

Aluri, Krishna C,

Ge, Ying,

Donnelly, Daniel P,

Auclair, Jared R,

Johnson, Kendall R,

Chen, Bifan,

Lantz, Carter,

Tsybin, Yury O,

Chamot-Rooke, Julia,

Loo, Joseph A,

Jung, Wonhyeuk,

Koller, Antonius,

Danis, Paul O,

Ivanov, Alexander R,

Whitelegge, Julian P,

Campuzano, Iain D G,

Smith, Lloyd M,

Lippens, Jennifer L,

Lin, Ziqing,

Schachner, Luis F,

DeHart, Caroline J

2019

Overview

One gene can give rise to many functionally distinct proteoforms, each of which has a characteristic molecular mass. Top-down mass spectrometry enables the analysis of intact proteins and proteoforms. Here members of the Consortium for Top-Down Proteomics provide a decision tree that guides researchers to robust protocols for mass analysis of intact proteins (antibodies, membrane proteins and others) from mixtures of varying complexity. We also present cross-platform analytical benchmarks using a protein standard sample, to allow users to gauge their proficiency.

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Nature Publishing Group

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