Journal Article

Evaluation of record linkage of two large administrative databases in a middle income country: stillbirths and notifications of dengue during pregnancy in Brazil

Harron, Katie, Fiaccone, Rosemeire L., Teixeira, Maria Glória, Andrade, Kleydson, Rodrigues, Laura C., Costa, Maria da Conceição N., Paixão, Enny S

2017

Overview

Background Due to the increasing availability of individual-level information across different electronic datasets, record linkage has become an efficient and important research tool. High quality linkage is essential for producing robust results. The objective of this study was to describe the process of preparing and linking national Brazilian datasets, and to compare the accuracy of different linkage methods for assessing the risk of stillbirth due to dengue in pregnancy. Methods We linked mothers and stillbirths in two routinely collected datasets from Brazil for 2009–2010: for dengue in pregnancy, notifications of infectious diseases (SINAN); for stillbirths, mortality (SIM). Since there was no unique identifier, we used probabilistic linkage based on maternal name, age and municipality. We compared two probabilistic approaches, each with two thresholds: 1) a bespoke linkage algorithm; 2) a standard linkage software widely used in Brazil ( ReclinkIII ), and used manual review to identify further links. Sensitivity and positive predictive value (PPV) were estimated using a subset of gold-standard data created through manual review. We examined the characteristics of false-matches and missed-matches to identify any sources of bias. Results From records of 678,999 dengue cases and 62,373 stillbirths, the gold-standard linkage identified 191 cases. The bespoke linkage algorithm with a conservative threshold produced 131 links, with sensitivity = 64.4% (68 missed-matches) and PPV = 92.5% (8 false-matches). Manual review of uncertain links identified an additional 37 links, increasing sensitivity to 83.7%. The bespoke algorithm with a relaxed threshold identified 132 true matches (sensitivity = 69.1%), but introduced 61 false-matches (PPV = 68.4%). ReclinkIII produced lower sensitivity and PPV than the bespoke linkage algorithm. Linkage error was not associated with any recorded study variables. Conclusion Despite a lack of unique identifiers for linking mothers and stillbirths, we demonstrate a high standard of linkage of large routine databases from a middle income country. Probabilistic linkage and manual review were essential for accurately identifying cases for a case-control study, but this approach may not be feasible for larger databases or for linkage of more common outcomes.

• Publisher: BioMed Central,BioMed Central Ltd,Springer Nature B.V,BMC
• Subject: Age / Algorithms / Analysis / Brazil / Brazil - epidemiology / Data linkage / Datasets / Dengue / Dengue - epidemiology / Dengue fever / Disease / Electronic health records / Electronic Health Records - standards / Electronic records / Female / Gold / Health aspects / Health Informatics / Health risk assessment / Health surveillance / Humans / Income / Infectious diseases / Information systems / Information Systems and Communication Service / Laboratories / Linkage accuracy / Linkage quality / Linked Data / Links / Management of Computing and Information Systems / Marital status / Medical Record Linkage - standards / Medical records / Medicine / Medicine & Public Health / Mortality / Pregnancy / Pregnancy Complications, Infectious - epidemiology / Pregnant women / Public health / Research Article / Risk / Risk factors / Routine data / Sensitivity / Standard data / Stillbirth / Stillbirth - epidemiology / Uniqueness / Vector-borne diseases