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Large scale discovery of coronavirus-host factor protein interaction motifs reveals SARS-CoV-2 specific mechanisms and vulnerabilities
by
Andersson, Eva
, Jemth, Per
, Kliche, Johanna
, Överby, Anna K.
, Garvanska, Dimitriya H.
, Nilsson, Emma
, Mihalic, Filip
, Coscia, Fabian
, Lindqvist, Richard
, Ali, Muhammad
, Davey, Norman E.
, Mann, Matthias
, Benz, Caroline
, Inturi, Raviteja
, Sayadi, Ahmed
, Simonetti, Leandro
, Moliner Morro, Ainhoa
, Ivarsson, Ylva
, Kruse, Thomas
, McInerney, Gerald
, Nilsson, Jakob
, Mund, Andreas
in
13/1
/ 14/19
/ 14/35
/ 49/75
/ 631/337/475/2290
/ 631/45/475/2290
/ 631/57/2269
/ 82/58
/ 82/80
/ 82/83
/ Adaptor Proteins, Signal Transducing - metabolism
/ Antiviral drugs
/ Coronaviridae
/ Coronaviruses
/ COVID-19
/ DNA Helicases - metabolism
/ General Biochemistry
/ General Chemistry
/ General Physics and Astronomy
/ Genetics and Molecular Biology
/ Granular materials
/ Humanities and Social Sciences
/ Humans
/ Integration Host Factors - metabolism
/ multidisciplinary
/ Nucleocapsids
/ Peptides
/ Phages
/ Poly-ADP-Ribose Binding Proteins - metabolism
/ Protein interaction
/ Proteins
/ Reagents
/ RNA Helicases - metabolism
/ RNA Recognition Motif Proteins - metabolism
/ RNA-Binding Proteins - metabolism
/ SARS-CoV-2 - metabolism
/ Science
/ Science (multidisciplinary)
/ Severe acute respiratory syndrome coronavirus 2
/ Viral diseases
/ Virus Replication - physiology
2021
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Large scale discovery of coronavirus-host factor protein interaction motifs reveals SARS-CoV-2 specific mechanisms and vulnerabilities
by
Andersson, Eva
, Jemth, Per
, Kliche, Johanna
, Överby, Anna K.
, Garvanska, Dimitriya H.
, Nilsson, Emma
, Mihalic, Filip
, Coscia, Fabian
, Lindqvist, Richard
, Ali, Muhammad
, Davey, Norman E.
, Mann, Matthias
, Benz, Caroline
, Inturi, Raviteja
, Sayadi, Ahmed
, Simonetti, Leandro
, Moliner Morro, Ainhoa
, Ivarsson, Ylva
, Kruse, Thomas
, McInerney, Gerald
, Nilsson, Jakob
, Mund, Andreas
in
13/1
/ 14/19
/ 14/35
/ 49/75
/ 631/337/475/2290
/ 631/45/475/2290
/ 631/57/2269
/ 82/58
/ 82/80
/ 82/83
/ Adaptor Proteins, Signal Transducing - metabolism
/ Antiviral drugs
/ Coronaviridae
/ Coronaviruses
/ COVID-19
/ DNA Helicases - metabolism
/ General Biochemistry
/ General Chemistry
/ General Physics and Astronomy
/ Genetics and Molecular Biology
/ Granular materials
/ Humanities and Social Sciences
/ Humans
/ Integration Host Factors - metabolism
/ multidisciplinary
/ Nucleocapsids
/ Peptides
/ Phages
/ Poly-ADP-Ribose Binding Proteins - metabolism
/ Protein interaction
/ Proteins
/ Reagents
/ RNA Helicases - metabolism
/ RNA Recognition Motif Proteins - metabolism
/ RNA-Binding Proteins - metabolism
/ SARS-CoV-2 - metabolism
/ Science
/ Science (multidisciplinary)
/ Severe acute respiratory syndrome coronavirus 2
/ Viral diseases
/ Virus Replication - physiology
2021
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Large scale discovery of coronavirus-host factor protein interaction motifs reveals SARS-CoV-2 specific mechanisms and vulnerabilities
by
Andersson, Eva
, Jemth, Per
, Kliche, Johanna
, Överby, Anna K.
, Garvanska, Dimitriya H.
, Nilsson, Emma
, Mihalic, Filip
, Coscia, Fabian
, Lindqvist, Richard
, Ali, Muhammad
, Davey, Norman E.
, Mann, Matthias
, Benz, Caroline
, Inturi, Raviteja
, Sayadi, Ahmed
, Simonetti, Leandro
, Moliner Morro, Ainhoa
, Ivarsson, Ylva
, Kruse, Thomas
, McInerney, Gerald
, Nilsson, Jakob
, Mund, Andreas
in
13/1
/ 14/19
/ 14/35
/ 49/75
/ 631/337/475/2290
/ 631/45/475/2290
/ 631/57/2269
/ 82/58
/ 82/80
/ 82/83
/ Adaptor Proteins, Signal Transducing - metabolism
/ Antiviral drugs
/ Coronaviridae
/ Coronaviruses
/ COVID-19
/ DNA Helicases - metabolism
/ General Biochemistry
/ General Chemistry
/ General Physics and Astronomy
/ Genetics and Molecular Biology
/ Granular materials
/ Humanities and Social Sciences
/ Humans
/ Integration Host Factors - metabolism
/ multidisciplinary
/ Nucleocapsids
/ Peptides
/ Phages
/ Poly-ADP-Ribose Binding Proteins - metabolism
/ Protein interaction
/ Proteins
/ Reagents
/ RNA Helicases - metabolism
/ RNA Recognition Motif Proteins - metabolism
/ RNA-Binding Proteins - metabolism
/ SARS-CoV-2 - metabolism
/ Science
/ Science (multidisciplinary)
/ Severe acute respiratory syndrome coronavirus 2
/ Viral diseases
/ Virus Replication - physiology
2021
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Large scale discovery of coronavirus-host factor protein interaction motifs reveals SARS-CoV-2 specific mechanisms and vulnerabilities
Journal Article
Large scale discovery of coronavirus-host factor protein interaction motifs reveals SARS-CoV-2 specific mechanisms and vulnerabilities
2021
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Overview
Viral proteins make extensive use of short peptide interaction motifs to hijack cellular host factors. However, most current large-scale methods do not identify this important class of protein-protein interactions. Uncovering peptide mediated interactions provides both a molecular understanding of viral interactions with their host and the foundation for developing novel antiviral reagents. Here we describe a viral peptide discovery approach covering 23 coronavirus strains that provides high resolution information on direct virus-host interactions. We identify 269 peptide-based interactions for 18 coronaviruses including a specific interaction between the human G3BP1/2 proteins and an ΦxFG peptide motif in the SARS-CoV-2 nucleocapsid (N) protein. This interaction supports viral replication and through its ΦxFG motif N rewires the G3BP1/2 interactome to disrupt stress granules. A peptide-based inhibitor disrupting the G3BP1/2-N interaction dampened SARS-CoV-2 infection showing that our results can be directly translated into novel specific antiviral reagents.
Many interactions between viral and host proteins are mediated by short peptide motifs. Here, using a phage-based viral peptide library, the authors identify 269 peptide-based interactions for 18 coronaviruses, including an interaction between SARS-CoV-2 N and G3BP1/2 that affects stress granules.
Publisher
Nature Publishing Group UK,Nature Publishing Group,Nature Portfolio
Subject
/ 14/19
/ 14/35
/ 49/75
/ 82/58
/ 82/80
/ 82/83
/ Adaptor Proteins, Signal Transducing - metabolism
/ COVID-19
/ General Physics and Astronomy
/ Genetics and Molecular Biology
/ Humanities and Social Sciences
/ Humans
/ Integration Host Factors - metabolism
/ Peptides
/ Phages
/ Poly-ADP-Ribose Binding Proteins - metabolism
/ Proteins
/ Reagents
/ RNA Recognition Motif Proteins - metabolism
/ RNA-Binding Proteins - metabolism
/ Science
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