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A comparative study of survival models for breast cancer prognostication revisited: the benefits of multi-gene models
by
Grzadkowski, Michal R.
, Sendorek, Dorota H.
, Boutros, Paul C.
, P’ng, Christine
, Huang, Vincent
in
Algorithms
/ Bioinformatics
/ Biological markers
/ Biomarkers
/ Biomarkers, Tumor - metabolism
/ Biomedical and Life Sciences
/ Breast cancer
/ Breast Neoplasms - genetics
/ Cancer
/ Comparative studies
/ Computational Biology/Bioinformatics
/ Computer Appl. in Life Sciences
/ Databases, Genetic
/ Datasets
/ Diagnosis
/ Female
/ Gene expression
/ Genetic aspects
/ Genomics
/ Humans
/ Hypotheses
/ Life Sciences
/ Mathematical models
/ Medical prognosis
/ Microarrays
/ Models, Genetic
/ Multi-gene models
/ Partitions
/ Patients
/ Population (statistical)
/ Predictions
/ Prognosis
/ Research Article
/ Single-gene models
/ Statistical analysis
/ Statistical models
/ Survival
/ Survival Analysis
/ Survival models
/ Transcriptome analysis
2018
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A comparative study of survival models for breast cancer prognostication revisited: the benefits of multi-gene models
by
Grzadkowski, Michal R.
, Sendorek, Dorota H.
, Boutros, Paul C.
, P’ng, Christine
, Huang, Vincent
in
Algorithms
/ Bioinformatics
/ Biological markers
/ Biomarkers
/ Biomarkers, Tumor - metabolism
/ Biomedical and Life Sciences
/ Breast cancer
/ Breast Neoplasms - genetics
/ Cancer
/ Comparative studies
/ Computational Biology/Bioinformatics
/ Computer Appl. in Life Sciences
/ Databases, Genetic
/ Datasets
/ Diagnosis
/ Female
/ Gene expression
/ Genetic aspects
/ Genomics
/ Humans
/ Hypotheses
/ Life Sciences
/ Mathematical models
/ Medical prognosis
/ Microarrays
/ Models, Genetic
/ Multi-gene models
/ Partitions
/ Patients
/ Population (statistical)
/ Predictions
/ Prognosis
/ Research Article
/ Single-gene models
/ Statistical analysis
/ Statistical models
/ Survival
/ Survival Analysis
/ Survival models
/ Transcriptome analysis
2018
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A comparative study of survival models for breast cancer prognostication revisited: the benefits of multi-gene models
by
Grzadkowski, Michal R.
, Sendorek, Dorota H.
, Boutros, Paul C.
, P’ng, Christine
, Huang, Vincent
in
Algorithms
/ Bioinformatics
/ Biological markers
/ Biomarkers
/ Biomarkers, Tumor - metabolism
/ Biomedical and Life Sciences
/ Breast cancer
/ Breast Neoplasms - genetics
/ Cancer
/ Comparative studies
/ Computational Biology/Bioinformatics
/ Computer Appl. in Life Sciences
/ Databases, Genetic
/ Datasets
/ Diagnosis
/ Female
/ Gene expression
/ Genetic aspects
/ Genomics
/ Humans
/ Hypotheses
/ Life Sciences
/ Mathematical models
/ Medical prognosis
/ Microarrays
/ Models, Genetic
/ Multi-gene models
/ Partitions
/ Patients
/ Population (statistical)
/ Predictions
/ Prognosis
/ Research Article
/ Single-gene models
/ Statistical analysis
/ Statistical models
/ Survival
/ Survival Analysis
/ Survival models
/ Transcriptome analysis
2018
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A comparative study of survival models for breast cancer prognostication revisited: the benefits of multi-gene models
Journal Article
A comparative study of survival models for breast cancer prognostication revisited: the benefits of multi-gene models
2018
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Overview
Background
The development of clinical -omic biomarkers for predicting patient prognosis has mostly focused on multi-gene models. However, several studies have described significant weaknesses of multi-gene biomarkers. Indeed, some high-profile reports have even indicated that multi-gene biomarkers fail to consistently outperform simple single-gene ones. Given the continual improvements in -omics technologies and the availability of larger, better-powered datasets, we revisited this “single-gene hypothesis” using new techniques and datasets.
Results
By deeply sampling the population of available gene sets, we compare the intrinsic properties of single-gene biomarkers to multi-gene biomarkers in twelve different partitions of a large breast cancer meta-dataset. We show that simple multi-gene models consistently outperformed single-gene biomarkers in all twelve partitions. We found 270 multi-gene biomarkers (one per ~11,111 sampled) that always made better predictions than the best single-gene model.
Conclusions
The single-gene hypothesis for breast cancer does not appear to retain its validity in the face of improved statistical models, lower-noise genomic technology and better-powered patient cohorts. These results highlight that it is critical to revisit older hypotheses in the light of newer techniques and datasets.
Publisher
BioMed Central,BioMed Central Ltd,Springer Nature B.V,BMC
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