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Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement

by He, W , Soderlund, C , Dolezel, J , Cannon, S , Gaur, P.M , Padhyaya, H.D , Zhao, S , Edwards, D , Datta, S.K , Winter, P , Nelson, W , Tar'an, B , Iwata, A , Penmetsa, R.V , Xu, C , Ingh, K.B , Xu, X , Thudi, M , Millan, T , Jackson, S.A , Ramsay, L.D , Song, C , Nadarajan, N , Lichtenzveig, J , Cook, D.R , Yu, S , Carrasquilla-Garcia, N , Gali, K.K , Gil, J , Farmer, A.D , Baek, J , Wang, J , Sharpe, A.G , Azam, S , Condie, J.A , Luo, M.-C , Bansal, K.C , Wang, Y , Bharti, A.K , Zhang, X , Hane, J.K , Zhang, G , Varshney, R.K , Gowda C.L.L., International Crops Research Institute for the Semi-Arid Tropics (ICRISAT) , Rosen, B.D , Singh, N.P , Kahl, G , Saxena, R.K , Rubio, J

in 631/449/2491 / 631/61/212 / Agricultural biotechnology / Agriculture / agronomic trait / Agronomic traits / Balancing selection / Bioinformatics / Biomedical Engineering/Biotechnology / Biomedicine / Biotechnology / breeding / Chickpea / Cicer / Cicer - genetics / Cicer - physiology / Cicer arietinum / Developing countries / Disease Resistance / DNA / DNA - chemistry / DNA - genetics / Domestication / Food security / Food supply / gene sequence / Genes / Genetic aspects / Genetic Variation / Genome sequences / Genome, Plant / Genome, Plant - physiology / Genomics / Genotype / Genotypes / LDCs / Legumes / Life Sciences / Molecular breeding / Natural history / Nitrogen / Nucleotide sequence / Phylogeny / Plant breeding / plant genome / Plant immunology / Repetitive Sequences, Nucleic Acid / Sequence Analysis, DNA / Soybeans / Trait improvement / Transgenic plants / Whole-genome shotgun

2013

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Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement

2013

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2013

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Journal Article

Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement

He, W,

Soderlund, C,

Dolezel, J,

Cannon, S,

Gaur, P.M,

Padhyaya, H.D,

Zhao, S,

Edwards, D,

Datta, S.K,

Winter, P,

Nelson, W,

Tar'an, B,

Iwata, A,

Penmetsa, R.V,

Xu, C,

Ingh, K.B,

Xu, X,

Thudi, M,

Millan, T,

Jackson, S.A,

Ramsay, L.D,

Song, C,

Nadarajan, N,

Lichtenzveig, J,

Cook, D.R,

Yu, S,

Carrasquilla-Garcia, N,

Gali, K.K,

Gil, J,

Farmer, A.D,

Baek, J,

Wang, J,

Sharpe, A.G,

Azam, S,

Condie, J.A,

Luo, M.-C,

Bansal, K.C,

Wang, Y,

Bharti, A.K,

Zhang, X,

Hane, J.K,

Zhang, G,

Varshney, R.K,

Gowda C.L.L., International Crops Research Institute for the Semi-Arid Tropics (ICRISAT),

Rosen, B.D,

Singh, N.P,

Kahl, G,

Saxena, R.K,

Rubio, J

2013

Overview

Chickpea (Cicer arietinum) is the second most widely grown legume crop after soybean, accounting for a substantial proportion of human dietary nitrogen intake and playing a crucial role in food security in developing countries. We report the ∼738-Mb draft whole genome shotgun sequence of CDC Frontier, a kabuli chickpea variety, which contains an estimated 28,269 genes. Resequencing and analysis of 90 cultivated and wild genotypes from ten countries identifies targets of both breeding-associated genetic sweeps and breeding-associated balancing selection. Candidate genes for disease resistance and agronomic traits are highlighted, including traits that distinguish the two main market classes of cultivated chickpea - desi and kabuli. These data comprise a resource for chickpea improvement through molecular breeding and provide insights into both genome diversity and domestication. Copyright © 2013 Nature America, Inc.

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Publisher

Nature Publishing Group US,Nature Publishing Group

Subject

631/449/2491

/ 631/61/212

/ Agricultural biotechnology

/ Agriculture

/ agronomic trait

/ Agronomic traits

/ Balancing selection