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Mortality in sea lions is associated with the introduction of the H5N1 clade 2.3.4.4b virus in Brazil October 2023: whole genome sequencing and phylogenetic analysis
by
Macagnan, Eduardo
, Silva, Laura Morais Nascimento
, de Carvalho Araujo, Andreina
, Cho, Andrew Yong
, Arns, Clarice Weis
, Malta, Fernanda
, Kolesnikvoas, Cristiane K. M.
, Dick, Jeferson Luis
, Albuquerque, Adriana Silva
, Miller, Michael
, Pinho, João Renato R.
, Lemos, Giulia Gaglianone
, Amgarten, Deyvid
, Vieira, Jenyffer Vierheller
, Lee, Dong-Hun
, de Souza, Gabriela Cristini
, Corrêa, Thais Camilo
, Ferreira, Helena Lage
, de Castilho, Pedro Volkmer
, Palameta, Soledad
, Meurer, Rafael
, Barreto, André Silva
, Lee, Sun-Hak
, Groch, Karina Rejane
, Dorlass, Erick G.
, Durigon, Edison L.
in
Adaptation
/ Amino acids
/ Analysis
/ Animals
/ Avian flu
/ Avian influenza
/ Avian influenza viruses
/ Birds
/ Brazil
/ Diseases
/ DNA sequencing
/ Evolution
/ Genes
/ Genetic analysis
/ Genetic aspects
/ Genetic diversity
/ Genetic Variation
/ genome
/ Genome, Viral
/ Genomes
/ Genomic analysis
/ Genomics
/ Genotype
/ Genotype & phenotype
/ Genotypes
/ Health aspects
/ High pathogenicity avian influenza
/ Influenza A virus
/ Influenza A Virus, H5N1 Subtype - classification
/ Influenza A Virus, H5N1 Subtype - genetics
/ landscape genetics
/ mammals
/ Marine mammal
/ Marine mammals
/ Medicine
/ Medicine & Public Health
/ Methods
/ Mortality
/ Mutation
/ North America
/ Nucleotide sequencing
/ Orthomyxoviridae Infections - veterinary
/ Orthomyxoviridae Infections - virology
/ Otariidae
/ Phylogenetics
/ Phylogeny
/ Public health
/ Sea lions
/ Sea Lions - virology
/ Software
/ South America
/ Transgenics
/ Veterinary Medicine/Veterinary Science
/ Virus
/ Viruses
/ Whole Genome Sequencing
/ Zoology
/ Zoonotic diseases
2024
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Mortality in sea lions is associated with the introduction of the H5N1 clade 2.3.4.4b virus in Brazil October 2023: whole genome sequencing and phylogenetic analysis
by
Macagnan, Eduardo
, Silva, Laura Morais Nascimento
, de Carvalho Araujo, Andreina
, Cho, Andrew Yong
, Arns, Clarice Weis
, Malta, Fernanda
, Kolesnikvoas, Cristiane K. M.
, Dick, Jeferson Luis
, Albuquerque, Adriana Silva
, Miller, Michael
, Pinho, João Renato R.
, Lemos, Giulia Gaglianone
, Amgarten, Deyvid
, Vieira, Jenyffer Vierheller
, Lee, Dong-Hun
, de Souza, Gabriela Cristini
, Corrêa, Thais Camilo
, Ferreira, Helena Lage
, de Castilho, Pedro Volkmer
, Palameta, Soledad
, Meurer, Rafael
, Barreto, André Silva
, Lee, Sun-Hak
, Groch, Karina Rejane
, Dorlass, Erick G.
, Durigon, Edison L.
in
Adaptation
/ Amino acids
/ Analysis
/ Animals
/ Avian flu
/ Avian influenza
/ Avian influenza viruses
/ Birds
/ Brazil
/ Diseases
/ DNA sequencing
/ Evolution
/ Genes
/ Genetic analysis
/ Genetic aspects
/ Genetic diversity
/ Genetic Variation
/ genome
/ Genome, Viral
/ Genomes
/ Genomic analysis
/ Genomics
/ Genotype
/ Genotype & phenotype
/ Genotypes
/ Health aspects
/ High pathogenicity avian influenza
/ Influenza A virus
/ Influenza A Virus, H5N1 Subtype - classification
/ Influenza A Virus, H5N1 Subtype - genetics
/ landscape genetics
/ mammals
/ Marine mammal
/ Marine mammals
/ Medicine
/ Medicine & Public Health
/ Methods
/ Mortality
/ Mutation
/ North America
/ Nucleotide sequencing
/ Orthomyxoviridae Infections - veterinary
/ Orthomyxoviridae Infections - virology
/ Otariidae
/ Phylogenetics
/ Phylogeny
/ Public health
/ Sea lions
/ Sea Lions - virology
/ Software
/ South America
/ Transgenics
/ Veterinary Medicine/Veterinary Science
/ Virus
/ Viruses
/ Whole Genome Sequencing
/ Zoology
/ Zoonotic diseases
2024
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Mortality in sea lions is associated with the introduction of the H5N1 clade 2.3.4.4b virus in Brazil October 2023: whole genome sequencing and phylogenetic analysis
by
Macagnan, Eduardo
, Silva, Laura Morais Nascimento
, de Carvalho Araujo, Andreina
, Cho, Andrew Yong
, Arns, Clarice Weis
, Malta, Fernanda
, Kolesnikvoas, Cristiane K. M.
, Dick, Jeferson Luis
, Albuquerque, Adriana Silva
, Miller, Michael
, Pinho, João Renato R.
, Lemos, Giulia Gaglianone
, Amgarten, Deyvid
, Vieira, Jenyffer Vierheller
, Lee, Dong-Hun
, de Souza, Gabriela Cristini
, Corrêa, Thais Camilo
, Ferreira, Helena Lage
, de Castilho, Pedro Volkmer
, Palameta, Soledad
, Meurer, Rafael
, Barreto, André Silva
, Lee, Sun-Hak
, Groch, Karina Rejane
, Dorlass, Erick G.
, Durigon, Edison L.
in
Adaptation
/ Amino acids
/ Analysis
/ Animals
/ Avian flu
/ Avian influenza
/ Avian influenza viruses
/ Birds
/ Brazil
/ Diseases
/ DNA sequencing
/ Evolution
/ Genes
/ Genetic analysis
/ Genetic aspects
/ Genetic diversity
/ Genetic Variation
/ genome
/ Genome, Viral
/ Genomes
/ Genomic analysis
/ Genomics
/ Genotype
/ Genotype & phenotype
/ Genotypes
/ Health aspects
/ High pathogenicity avian influenza
/ Influenza A virus
/ Influenza A Virus, H5N1 Subtype - classification
/ Influenza A Virus, H5N1 Subtype - genetics
/ landscape genetics
/ mammals
/ Marine mammal
/ Marine mammals
/ Medicine
/ Medicine & Public Health
/ Methods
/ Mortality
/ Mutation
/ North America
/ Nucleotide sequencing
/ Orthomyxoviridae Infections - veterinary
/ Orthomyxoviridae Infections - virology
/ Otariidae
/ Phylogenetics
/ Phylogeny
/ Public health
/ Sea lions
/ Sea Lions - virology
/ Software
/ South America
/ Transgenics
/ Veterinary Medicine/Veterinary Science
/ Virus
/ Viruses
/ Whole Genome Sequencing
/ Zoology
/ Zoonotic diseases
2024
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Mortality in sea lions is associated with the introduction of the H5N1 clade 2.3.4.4b virus in Brazil October 2023: whole genome sequencing and phylogenetic analysis
Journal Article
Mortality in sea lions is associated with the introduction of the H5N1 clade 2.3.4.4b virus in Brazil October 2023: whole genome sequencing and phylogenetic analysis
2024
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Overview
Clade 2.3.4.4b highly pathogenic avian influenza (HPAI) H5N1 virus was detected in the South American sea lions found dead in Santa Catarina, Brazil, in October 2023. Whole genome sequencing and comparative phylogenetic analysis were conducted to investigate the origin, genetic diversity, and zoonotic potentials of the H5N1 viruses. The H5N1 viruses belonged to the genotype B3.2 of clade 2.3.4.4b H5N1 virus, which was identified in North America and disseminated to South America. They have acquired new amino acid substitutions related to mammalian host affinity. Our study provides insights into the genetic landscape of HPAI H5N1 viruses in Brazil, highlighting the continuous evolutionary processes contributing to their possible adaptation to mammalian hosts.
Publisher
BioMed Central,BioMed Central Ltd,Springer Nature B.V,BMC
Subject
/ Analysis
/ Animals
/ Birds
/ Brazil
/ Diseases
/ Genes
/ genome
/ Genomes
/ Genomics
/ Genotype
/ High pathogenicity avian influenza
/ Influenza A Virus, H5N1 Subtype - classification
/ Influenza A Virus, H5N1 Subtype - genetics
/ mammals
/ Medicine
/ Methods
/ Mutation
/ Orthomyxoviridae Infections - veterinary
/ Orthomyxoviridae Infections - virology
/ Software
/ Veterinary Medicine/Veterinary Science
/ Virus
/ Viruses
/ Zoology
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