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Integration of single-cell multi-omics data by regression analysis on unpaired observations
by
Duren, Zhana
, Yuan, Qiuyue
in
Animal Genetics and Genomics
/ Bioinformatics
/ Biomedical and Life Sciences
/ Chromatin
/ Chromatin - genetics
/ Cis-regulatory network
/ DNA methylation
/ Evolutionary Biology
/ Gene expression
/ Gene mapping
/ genome
/ Genomes
/ Genomics
/ Human Genetics
/ Life Sciences
/ Method
/ Microbial Genetics and Genomics
/ multiomics
/ Performance evaluation
/ Plant Genetics and Genomics
/ Regression Analysis
/ Regression model on unpaired observations
/ School dropouts
/ Single-Cell Analysis
/ Single-cell multi-omics
/ Statistical analysis
/ Statistical methods
2022
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Integration of single-cell multi-omics data by regression analysis on unpaired observations
by
Duren, Zhana
, Yuan, Qiuyue
in
Animal Genetics and Genomics
/ Bioinformatics
/ Biomedical and Life Sciences
/ Chromatin
/ Chromatin - genetics
/ Cis-regulatory network
/ DNA methylation
/ Evolutionary Biology
/ Gene expression
/ Gene mapping
/ genome
/ Genomes
/ Genomics
/ Human Genetics
/ Life Sciences
/ Method
/ Microbial Genetics and Genomics
/ multiomics
/ Performance evaluation
/ Plant Genetics and Genomics
/ Regression Analysis
/ Regression model on unpaired observations
/ School dropouts
/ Single-Cell Analysis
/ Single-cell multi-omics
/ Statistical analysis
/ Statistical methods
2022
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Integration of single-cell multi-omics data by regression analysis on unpaired observations
by
Duren, Zhana
, Yuan, Qiuyue
in
Animal Genetics and Genomics
/ Bioinformatics
/ Biomedical and Life Sciences
/ Chromatin
/ Chromatin - genetics
/ Cis-regulatory network
/ DNA methylation
/ Evolutionary Biology
/ Gene expression
/ Gene mapping
/ genome
/ Genomes
/ Genomics
/ Human Genetics
/ Life Sciences
/ Method
/ Microbial Genetics and Genomics
/ multiomics
/ Performance evaluation
/ Plant Genetics and Genomics
/ Regression Analysis
/ Regression model on unpaired observations
/ School dropouts
/ Single-Cell Analysis
/ Single-cell multi-omics
/ Statistical analysis
/ Statistical methods
2022
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Integration of single-cell multi-omics data by regression analysis on unpaired observations
Journal Article
Integration of single-cell multi-omics data by regression analysis on unpaired observations
2022
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Overview
Despite recent developments, it is hard to profile all multi-omics single-cell data modalities on the same cell. Thus, huge amounts of single-cell genomics data of unpaired observations on different cells are generated. We propose a method named UnpairReg for the regression analysis on unpaired observations to integrate single-cell multi-omics data. On real and simulated data, UnpairReg provides an accurate estimation of cell gene expression where only chromatin accessibility data is available. The
cis
-regulatory network inferred from UnpairReg is highly consistent with eQTL mapping. UnpairReg improves cell type identification accuracy by joint analysis of single-cell gene expression and chromatin accessibility data.
Publisher
BioMed Central,Springer Nature B.V,BMC
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