Journal Article

H3K18 lactylation marks tissue-specific active enhancers

De Bock, Katrien, Ghosh, Adhideb, Castellano-Castillo, Daniel, Desgeorges, Thibaut, Melrose, Kate, Galle, Eva, Ruiz, Jonatan R., Ruiz-Ojeda, Francisco Javier, von Meyenn, Ferdinand, Wong, Chee-Wai, Engl, Magdalena, de Sousa, Joao Agostinho, Hinte, Laura C.

2022

Overview

Background Histone lactylation has been recently described as a novel histone post-translational modification linking cellular metabolism to epigenetic regulation. Results Given the expected relevance of this modification and current limited knowledge of its function, we generate genome-wide datasets of H3K18la distribution in various in vitro and in vivo samples, including mouse embryonic stem cells, macrophages, adipocytes, and mouse and human skeletal muscle. We compare them to profiles of well-established histone modifications and gene expression patterns. Supervised and unsupervised bioinformatics analysis shows that global H3K18la distribution resembles H3K27ac, although we also find notable differences. H3K18la marks active CpG island-containing promoters of highly expressed genes across most tissues assessed, including many housekeeping genes, and positively correlates with H3K27ac and H3K4me3 as well as with gene expression. In addition, H3K18la is enriched at active enhancers that lie in proximity to genes that are functionally important for the respective tissue. Conclusions Overall, our data suggests that H3K18la is not only a marker for active promoters, but also a mark of tissue specific active enhancers.

• Publisher: BioMed Central,Springer Nature B.V,BMC
• Subject: Adipocytes / Animal Genetics and Genomics / Binding sites / Bioinformatics / Biomedical and Life Sciences / CpG islands / data collection / Datasets / Embryo cells / Embryonic stem cell / Enhancers / Epigenetics / Evolutionary Biology / Gene expression / genome / Genomes / H3K18la / Histones / Human Genetics / humans / Ischemia / Lactate / Lactylation / Life Sciences / Localization / Macrophages / Metabolism / Metabolites / mice / Microbial Genetics and Genomics / Muscle / Plant Genetics and Genomics / Post-translation / post-translational modification / Promoters / Skeletal muscle / Stem cell transplantation / Stem cells