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Although aerial image-based bathymetric mapping can provide, unlike acoustic or LiDAR (Light Detection and Ranging) sensors, both water depth and visual information, water refraction poses significant challenges for accurate depth estimation. In order to tackle this challenge, we propose an image correction methodology, which first exploits recent machine learning procedures that recover depth from image-based dense point clouds and then corrects refraction on the original imaging dataset. This way, the structure from motion (SfM) and multi-view stereo (MVS) processing pipelines are executed on a refraction-free set of aerial datasets, resulting in highly accurate bathymetric maps. Performed experiments and validation were based on datasets acquired during optimal sea state conditions and derived from four different test-sites characterized by excellent sea bottom visibility and textured seabed. Results demonstrated the high potential of our approach, both in terms of bathymetric accuracy, as well as texture and orthoimage quality.

The determination of accurate bathymetric information is a key element for near offshore activities; hydrological studies, such as coastal engineering applications, sedimentary processes, hydrographic surveying, archaeological mapping and biological research. Through structure from motion (SfM) and multi-view-stereo (MVS) techniques, aerial imagery can provide a low-cost alternative compared to bathymetric LiDAR (Light Detection and Ranging) surveys, as it offers additional important visual information and higher spatial resolution. Nevertheless, water refraction poses significant challenges on depth determination. Till now, this problem has been addressed through customized image-based refraction correction algorithms or by modifying the collinearity equation. In this article, in order to overcome the water refraction errors in a massive and accurate way, we employ machine learning tools, which are able to learn the systematic underestimation of the estimated depths. In particular, an SVR (support vector regression) model was developed, based on known depth observations from bathymetric LiDAR surveys, which is able to accurately recover bathymetry from point clouds derived from SfM-MVS procedures. Experimental results and validation were based on datasets derived from different test-sites, and demonstrated the high potential of our approach. Moreover, we exploited the fusion of LiDAR and image-based point clouds towards addressing challenges of both modalities in problematic areas.

Images obtained in an underwater environment are often affected by colour casting and suffer from poor visibility and lack of contrast. In the literature, there are many enhancement algorithms that improve different aspects of the underwater imagery. Each paper, when presenting a new algorithm or method, usually compares the proposed technique with some alternatives present in the current state of the art. There are no studies on the reliability of benchmarking methods, as the comparisons are based on various subjective and objective metrics. This paper would pave the way towards the definition of an effective methodology for the performance evaluation of the underwater image enhancement techniques. Moreover, this work could orientate the underwater community towards choosing which method can lead to the best results for a given task in different underwater conditions. In particular, we selected five well-known methods from the state of the art and used them to enhance a dataset of images produced in various underwater sites with different conditions of depth, turbidity, and lighting. These enhanced images were evaluated by means of three different approaches: objective metrics often adopted in the related literature, a panel of experts in the underwater field, and an evaluation based on the results of 3D reconstructions.

Photogrammetry using structure from motion (SfM) techniques has evolved into a powerful tool for a variety of applications. Nevertheless, limits are imposed when two-media photogrammetry is needed, in cases such as submerged archaeological site documentation. Water refraction poses a clear limit on photogrammetric applications, especially when traditional methods and standardized pipelines are followed. This work tries to estimate the error introduced to depth measurements when no refraction correction model is used and proposes an easy to implement methodology in a modern photogrammetric workflow dominated by SfM and multi-view stereo (MVS) techniques. To be easily implemented within current software and workflow, this refraction correction approach is applied at the photo level. Results over two test sites in Cyprus against reference data suggest that despite the assumptions and approximations made the proposed algorithm can reduce the effect of refraction to two times the ground pixel size, regardless of the depth.

The very shallow marine basin of Puck Lagoon in the southern Baltic Sea, on the Northern coast of Poland, hosts valuable benthic habitats and cultural heritage sites. These include, among others, protected Zostera marina meadows, one of the Baltic’s major medieval harbours, a ship graveyard, and likely other submerged features that are yet to be discovered. Prior to this project, no comprehensive high-resolution remote sensing data were available for this area. This article describes the first Digital Elevation Models (DEMs) derived from a combination of airborne bathymetric LiDAR, multibeam echosounder, airborne photogrammetry and satellite imagery. These datasets also include multibeam echosounder backscatter and LiDAR intensity, allowing determination of the character and properties of the seafloor. Combined, these datasets are a vital resource for assessing and understanding seafloor morphology, benthic habitats, cultural heritage, and submerged landscapes. Given the significance of Puck Lagoon’s hydrographical, ecological, geological, and archaeological environs, the high-resolution bathymetry, acquired by our project, can provide the foundation for sustainable management and informed decision-making for this area of interest.

Marine animal forests are benthic communities dominated by sessile suspension feeders (such as sponges, corals, and bivalves) able to generate three-dimensional (3D) frameworks with high structural complexity. The biodiversity and functioning of marine animal forests are strictly related to their 3D complexity. The present paper aims at providing new perspectives in underwater optical surveys. Starting from the current gaps in data collection and analysis that critically limit the study and conservation of marine animal forests, we discuss the main technological and methodological needs for the investigation of their 3D structural complexity at different spatial and temporal scales. Despite recent technological advances, it seems that several issues in data acquisition and processing need to be solved, to properly map the different benthic habitats in which marine animal forests are present, their health status and to measure structural complexity. Proper precision and accuracy should be chosen and assured in relation to the biological and ecological processes investigated. Besides, standardized methods and protocols are strictly necessary to meet the FAIR (findability, accessibility, interoperability, and reusability) data principles for the stewardship of habitat mapping and biodiversity, biomass, and growth data.

Accurate, detailed, and regularly updated bathymetry, coupled with complex semantic content, is essential for under-mapped shallow-water environments facing increasing climatological and anthropogenic pressures. However, existing approaches that derive either depth or seabed classes from remote sensing imagery treat these tasks in isolation, forfeiting the mutual benefits of their interaction and hindering the broader adoption of deep learning methods. To address these limitations, we introduce Seabed-Net, a unified multi-task framework that simultaneously predicts bathymetry and pixel-based seabed classification from remote sensing imagery of various resolutions. Seabed-Net employs dual-branch encoders for bathymetry estimation and pixel-based seabed classification, integrates cross-task features via an Attention Feature Fusion module and a windowed Swin-Transformer fusion block, and balances objectives through dynamic task uncertainty weighting. In extensive evaluations at two heterogeneous coastal sites, it consistently outperforms traditional empirical models and traditional machine learning regression methods, achieving up to 75\\% lower RMSE. It also reduces bathymetric RMSE by 10-30\\% compared to state-of-the-art single-task and multi-task baselines and improves seabed classification accuracy up to 8\\%. Qualitative analyses further demonstrate enhanced spatial consistency, sharper habitat boundaries, and corrected depth biases in low-contrast regions. These results confirm that jointly modeling depth with both substrate and seabed habitats yields synergistic gains, offering a robust, open solution for integrated shallow-water mapping. Code and pretrained weights are available at https://github.com/pagraf/Seabed-Net.

Accurate, detailed, and high-frequent bathymetry is crucial for shallow seabed areas facing intense climatological and anthropogenic pressures. Current methods utilizing airborne or satellite optical imagery to derive bathymetry primarily rely on either SfM-MVS with refraction correction or Spectrally Derived Bathymetry (SDB). However, SDB methods often require extensive manual fieldwork or costly reference data, while SfM-MVS approaches face challenges even after refraction correction. These include depth data gaps and noise in environments with homogeneous visual textures, which hinder the creation of accurate and complete Digital Surface Models (DSMs) of the seabed. To address these challenges, this work introduces a methodology that combines the high-fidelity 3D reconstruction capabilities of the SfM-MVS methods with state-of-the-art refraction correction techniques, along with the spectral analysis capabilities of a new deep learning-based method for bathymetry prediction. This integration enables a synergistic approach where SfM-MVS derived DSMs with data gaps are used as training data to generate complete bathymetric maps. In this context, we propose Swin-BathyUNet that combines U-Net with Swin Transformer self-attention layers and a cross-attention mechanism, specifically tailored for SDB. Swin-BathyUNet is designed to improve bathymetric accuracy by capturing long-range spatial relationships and can also function as a standalone solution for standard SDB with various training depth data, independent of the SfM-MVS output. Experimental results in two completely different test sites in the Mediterranean and Baltic Seas demonstrate the effectiveness of the proposed approach through extensive experiments that demonstrate improvements in bathymetric accuracy, detail, coverage, and noise reduction in the predicted DSM. The code is available at https://github.com/pagraf/Swin-BathyUNet.

Benchmark datasets have become increasingly widespread in the scientific community as a method of comparison, validation, and improvement of theories and techniques thanks to more affordable means for sharing. While this especially holds for test sites and data collected above the water, publicly accessible benchmark activities for geospatial analyses in the underwater environment are not very common. Applying geomatic techniques underwater is challenging and expensive, especially when dealing with deep water and offshore operations. Moreover, benchmarking requires ground truth data for which, in water, several open issues exist concerning geometry and radiometry. Recognizing this scientific and technological challenge, the NAUTILUS (uNder And throUgh waTer datasets for geospatIaL stUdieS) project aims to create guidelines for new multi-sensor/cross-modality benchmark datasets. The project focuses on (i) surveying the actual needs and gaps in through and under-the-water geospatial applications through a questionnaire and interviews, (ii) launching a unique publicly available database collecting already existing datasets scattered across the web and literature, (iii) designing and identifying proper test site(s) and methodologies to deliver to the extended underwater community a brand-new multi-sensor/cross-modality benchmark dataset. The project outputs are available to researchers and practitioners in underwater measurements-related domains, as they can now access a comprehensive tool providing a synthesis of open questions and data already available. In doing so, past research efforts to collect and publish datasets have received additional credit and visibility.

Accurate image-based bathymetric mapping in shallow waters remains challenging due to the complex optical distortions such as wave induced patterns, scattering and sunglint, introduced by the dynamic water surface, the water column properties, and solar illumination. In this work, we introduce Sea-Undistort, a comprehensive synthetic dataset of 1200 paired 512x512 through-water scenes rendered in Blender. Each pair comprises a distortion-free and a distorted view, featuring realistic water effects such as sun glint, waves, and scattering over diverse seabeds. Accompanied by per-image metadata such as camera parameters, sun position, and average depth, Sea-Undistort enables supervised training that is otherwise infeasible in real environments. We use Sea-Undistort to benchmark two state-of-the-art image restoration methods alongside an enhanced lightweight diffusion-based framework with an early-fusion sun-glint mask. When applied to real aerial data, the enhanced diffusion model delivers more complete Digital Surface Models (DSMs) of the seabed, especially in deeper areas, reduces bathymetric errors, suppresses glint and scattering, and crisply restores fine seabed details. Dataset, weights, and code are publicly available at https://www.magicbathy.eu/Sea-Undistort.html.