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result(s) for
"Aki Yoshida"
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Impact of cryptic female choice on insemination success
by
Kasugai, Takashi
,
Sato, Noriyosi
,
Yoshida, Masa-aki
in
Animal behavior
,
Animal reproduction
,
Animals
2017
In polyandrous mating systems, sperm competition and cryptic female choice (CFC) are well recognized as postcopulatory evolutionary forces. However, it remains challenging to separate CFC from sperm competition and to estimate how much CFC influences insemination success because those processes usually occur inside the female’s body. The Japanese pygmy squid, Idiosepius paradoxus, is an ideal species in which to separate CFC from sperm competition because sperm transfer by the male and sperm displacement by the female can be observed directly at an external location on the female’s body. Here, we counted the number of spermatangia transferred to, removed from, and remaining on the female body during single copulation episodes. We measured behavioral and morphological characteristics of the male, such as duration of copulation and body size. Although males with larger body size and longer copulation time were capable of transferring larger amounts of sperm, females preferentially eliminated sperm from males with larger body size and shorter copulation time by spermatangia removal; thus, CFC could attenuate sperm precedence by larger males, whereas it reinforces sperm precedence by males with longer copulation time. Genetic paternity analysis revealed that fertilisation success for each male was correlated with remaining sperm volume that is adjusted by females after copulation.
Journal Article
Gut microbiota analysis of Blenniidae fishes including an algae-eating fish and clear boundary formation among isolated Vibrio strains
by
Akiyoshi, Hideo
,
Kawamukai, Makoto
,
Yoshida, Masa-aki
in
631/208/212/748
,
631/326
,
631/326/2565/2134
2022
Some marine fishes are algae-feeding, and the microorganisms in their digestive tracts produce carbohydrate hydrolyzing enzymes such as agarose and fucosidase, which are potentially interesting resource for new functional enzymes. The purpose of this study was to establish a method for identifying and utilizing characteristic bacteria from the intestines of two algae-eating fish species:
Andamia tetradactylus
, which exclusively eats algae on the rock surface, and stellar rockskipper
Entomacrodus stellifer
, which feeds on both algae and invertebrates. We tested the species composition of the intestinal bacterial flora and found that Proteobacteria were commonly found both in species as in the common gut communities of marine fish, whereas Spirochaetes and Tenericutes occupied the flora of
A. tetradactylus
. We then performed anaerobic and aerobic cultures and isolated 34 and 44 strains including 48 strains belonged to
Vibrio
species from
A. tetradactylus
and
E. stellifer
. We observed that some
Vibrio
strains formed a clear boundary to avoid contacting other strains of bacteria. Whole-genome sequencing of such two
Vibrio alginolyticus
strains revealed two cyclic chromosomes commonly found in the genome of
Vibrio
species, and some unique genes encoding alginate lyase, chitinases, and type I-F CRISPR-associated endoribonuclease for the first time in
Vibrio alginolyticus
.
Journal Article
Transcriptomic changes with increasing algal symbiont reveal the detailed process underlying establishment of coral-algal symbiosis
2018
To clarify the establishment process of coral-algal symbiotic relationships, coral transcriptome changes during increasing algal symbiont densities were examined in juvenile corals following inoculation with the algae
Symbiodinium goreaui
(clade C) and
S. trenchii
(clade D), and comparison of their transcriptomes with aposymbiotic corals by RNA-sequencing. Since
Symbiodinium
clades C and D showed very different rates of density increase, comparisons were made of early onsets of both symbionts, revealing that the host behaved differently for each. RNA-sequencing showed that the number of differentially-expressed genes in corals colonized by clade D increased ca. two-fold from 10 to 20 days, whereas corals with clade C showed unremarkable changes consistent with a slow rate of density increase. The data revealed dynamic metabolic changes in symbiotic corals. In addition, the endocytosis pathway was also upregulated, while lysosomal digestive enzymes and the immune system tended to be downregulated as the density of clade D algae increased. The present dataset provides an enormous number of candidate symbiosis-related molecules that exhibit the detailed process by which coral-algal endosymbiosis is established.
Journal Article
High‐quality expert annotations enhance artificial intelligence model accuracy for osteosarcoma X‐ray diagnosis
2024
Primary malignant bone tumors, such as osteosarcoma, significantly affect the pediatric and young adult populations, necessitating early diagnosis for effective treatment. This study developed a high‐performance artificial intelligence (AI) model to detect osteosarcoma from X‐ray images using highly accurate annotated data to improve diagnostic accuracy at initial consultations. Traditional models trained on unannotated data have shown limited success, with sensitivities of approximately 60%–70%. In contrast, our model used a data‐centric approach with annotations from an experienced oncologist, achieving a sensitivity of 95.52%, specificity of 96.21%, and an area under the curve of 0.989. The model was trained using 468 X‐ray images from 31 osteosarcoma cases and 378 normal knee images with a strategy to maximize diversity in the training and validation sets. It was evaluated using an independent dataset of 268 osteosarcoma and 554 normal knee images to ensure generalizability. By applying the U‐net architecture and advanced image processing techniques such as renormalization and affine transformations, our AI model outperforms existing models, reducing missed diagnoses and enhancing patient outcomes by facilitating earlier treatment. This study highlights the importance of high‐quality training data and advocates a shift towards data‐centric AI development in medical imaging. These insights can be extended to other rare cancers and diseases, underscoring the potential of AI in transforming diagnostic processes in oncology. The integration of this AI model into clinical workflows could support physicians in early osteosarcoma detection, thereby improving diagnostic accuracy and patient care.
This study developed a high‐performance artificial intelligence (AI) model to detect osteosarcoma from X‐ray images using highly accurate annotated training data from experienced oncologists. The model significantly outperformed existing models, achieving state‐of‐the‐art performance and indicating the importance of high‐quality training data in AI development for rare cancer diagnosis.
Journal Article
Comparative Study of Atmospheric Polycyclic Aromatic Hydrocarbons (PAHs) and Nitro-PAHs at Marine and Forest Background Stations in Shimane, Japan (2022–2024)
by
Matsumoto, Shingo
,
Bai, Pengchu
,
Khalid, Bushra
in
Air pollution
,
Air pollution control
,
Aromatic compounds
2025
To clarify the pollution characteristics of polycyclic aromatic hydrocarbons (PAHs) and nitro-PAHs (NPAHs) in the East Asian monsoon region under different atmospheric environments and to assess their potential influences on receptor areas, this study selected two background monitoring stations with different environments in Shimane Prefecture, Japan: a marine station (MB) and a forest station (SF). PM2.5 samples were simultaneously collected using a high-volume sampler during the summer and winter of 2022–2023, and ten PAHs and three NPAHs were quantified using HPLC. The concentrations of PAHs and NPAHs at MB and SF exhibited significant seasonal variations in 2022 (winter > summer). However, in 2023, a clear seasonal difference was observed only at MB. Isomer ratio analysis of PAHs at both stations indicated that traffic emissions and biomass or coal combustion were major contributors. Seasonal variations in the [2-NFR]/[1-NP] ratio indicated that, while high ratios at MB and SF during summer were mainly associated with local photochemical formation, low ratios in winter reflected long-range transportation of combustion-derived PAHs and NPAHs from the Asian continent. Incremental lifetime cancer risk values (10−7 to 10−11) indicated that even at background stations, the atmospheric environment poses certain health risks. This first comparative investigation of PAHs and NPAHs at two distinct background stations in Shimane again highlights the importance of international cooperation among East Asian countries for effective air pollution control.
Journal Article
CD30-targeted therapy induces apoptosis of inflammatory cytokine-stimulated synovial fibroblasts and ameliorates collagen antibody-induced arthritis in mice
2022
ObjectiveIt has been reported that levels of soluble CD30 in serum and joint fluid are significantly elevated in patients with rheumatoid arthritis (RA). This study aimed to investigate whether CD30 could be a therapeutic target for RA.MethodsThe expression and localization of CD30 were examined by immunohistochemical and double immunofluorescence staining on synovial tissue samples obtained from patients with RA or osteoarthritis (OA) during surgery. Changes in CD30 expression of fibroblast-like synoviocytes (FLS) from RA patients with or without TNFα and IL-1β stimulation were examined by the polymerase chain reaction (PCR) and flow cytometry. Collagen antibody-induced arthritis (CAIA) was created in DBA/1 mice, and the therapeutic effect of brentuximab vedotin (BV) was examined by clinical score, histological findings and measurement of serum levels of SAA, IL-6, and TNFα.ResultsCD30 expression was significantly higher in samples from patients with RA than from those with OA. Double immunofluorescence showed a low rate of co-localization of CD30 with CD20 or CD90, but a high rate of co-localization of CD30 and CD138. CD30 mRNA expression was upregulated 11.7-fold in FLS following stimulation by inflammatory cytokines. The clinical scores of CAIA mice were significantly lower following both BV treatments, however, the histological scores of CAIA mice were significantly lower only following treatment with high dose BV (70 mg/kg).ConclusionsCD30 was expressed on immunocompetent cells in synovial tissue from RA patients and in cytokine-stimulated FLS in vitro. High dose BV (70 mg/kg) showed significant therapeutic effects in ameliorating inflammation and joint destruction in CAIA mice, but low dose BV (30 mg/kg) was insufficient.
Journal Article
Impact of glacial cycles and ocean currents on radiation events in the Japanese turban snail Lunella coreensis
by
Setiamarga, Davin H. E.
,
Hirota, Kazuki
,
Teruya, Shinnosuke
in
Climate change
,
Genetic diversity
,
Glaciation
2025
The Japanese turban snail Lunella coreensis is sensitive to ocean currents due to its short pelagic larval stage and moderate dispersal ability, making it an ideal model for studying genetic diversity shaped by paleoclimatic shifts. In this study, we analyzed the mitochondrial genes COI and 12S of museum samples collected from various coasts across Japan and identified 10 haplogroups divided into Pacific Ocean and Japan Sea clades, influenced by Kuroshio and Tsushima currents. Divergence time estimates indicate radiation between 3000 and 77,000 yr ago, coinciding with the last ice age, supported by fossil evidence in Japan. Glaciation cycles likely caused genetic isolation and exchange. Rapid radiation between 18,000 and 1000 yr ago aligns with climatic changes during the last glacial maximum. Effective population size estimates indicate past bottlenecks. These findings reveal how historical environmental events shaped L. coreensis genetic diversity, laying the groundwork for future sclerochronological research on marine biodiversity.
Journal Article
Rare polyandry and common monogamy in the firefly squid, Watasenia scintillans
2020
In cephalopods, all species are considered to be polyandrous because of their common life history and reproductive traits reflecting a polyandrous mating system. Contrary to this belief, here we show several lines of evidence for monogamy in the firefly squid,
Watasenia scintillans
. In this species, females are capable of long-term storage of spermatangia, and of egg spawning even after the complete disappearance of males following the breeding season. The stored spermatangia are distributed equally between bilateral pouches under the female’s neck collar. Such a nonrandom pattern of sperm storage prompted us to hypothesize that females might engage in lifetime monandry. Hence, we genotyped female-stored spermatangia and offspring, and found that in 95% of females (18/19), all the spermatangia had been delivered from a single male and all the embryos in a clutch had been sired by spermatozoa from stored spermatangia. In males, throughout the reproductive season, relative testis mass was much smaller in
W. scintillans
than in all other cephalopods examined previously. The mean number of male-stored spermatophores was ~ 30, equivalent to only 2.5 matings. Our genetic, demographic and morphometrical data agree with a mathematical model predicting that monogyny is favored when potential mates are scarce. Together, these results suggest mutual monogamy in
W. scintillans
.
Journal Article
Identification of ENO‐1 positive extracellular vesicles as a circulating biomarker for monitoring of Ewing sarcoma
by
Iwata, Shintaro
,
Morita, Takuya
,
Fujiwara, Tomohiro
in
12E7 Antigen - blood
,
12E7 Antigen - metabolism
,
Animals
2024
The lack of circulating biomarkers for tumor monitoring is a major problem in Ewing sarcoma management. The development of methods for accurate tumor monitoring is required, considering the high recurrence rate of drug‐resistant Ewing sarcoma. Here, we describe a sensitive analytical technique for tumor monitoring of Ewing sarcoma by detecting circulating extracellular vesicles secreted from Ewing sarcoma cells. Proteomic analysis of Ewing sarcoma cell‐derived extracellular vesicles identified 564 proteins prominently observed in extracellular vesicles from three Ewing sarcoma cell lines. Among these, CD99, SLC1A5, and ENO‐1 were identified on extracellular vesicles purified from sera of patients with Ewing sarcoma before treatment but not on extracellular vesicles from those after treatment and healthy individuals. Notably, not only Ewing sarcoma‐derived extracellular vesicles but also Ewing sarcoma cells demonstrated proteomic expression of CD99 and ENO‐1 on their surface membranes. ENO‐1+CD63+ extracellular vesicle detection was reduced after tumor resection while both CD99+CD63+ and ENO‐1+CD63+ extracellular vesicles were detected in serum from Ewing sarcoma‐bearing mice. Finally, the accuracy of liquid biopsy targeting these candidates was assessed using extracellular vesicles from the sera of patients with Ewing sarcoma. Elevated ENO‐1+CD81+ extracellular vesicles in the serum of patients before treatments distinguished patients with Ewing sarcoma from healthy individuals with an area under the curve value of 0.92 (P < 0.001) and reflected the tumor burden in patients with Ewing sarcoma during multidisciplinary treatments. Collectively, circulating ENO‐1+CD81+ extracellular vesicle detection could represent a novel tool for tumor monitoring of Ewing sarcoma.
Proteomic analysis of Ewing sarcoma cell‐derived extracellular vesicles identified 564 proteins prominently observed in extracellular vesicles from three Ewing sarcoma cell lines. Among these, elevated ENO‐1+ CD81+ extracellular vesicles in the serum of patients before treatments distinguished patients with Ewing sarcoma from healthy individuals and reflected the tumor burden in patients with Ewing sarcoma during multidisciplinary treatments. Circulating ENO‐1+ CD81+ extracellular vesicle detection could represent a new tool for tumor monitoring of Ewing sarcoma.
Journal Article