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3,351 result(s) for "Alessandro, B"
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Explainability in music recommender systems
The most common way to listen to recorded music nowadays is via streaming platforms, which provide access to tens of millions of tracks. To assist users in effectively browsing these large catalogs, the integration of music recommender systems (MRSs) has become essential. Current real‐world MRSs are often quite complex and optimized for recommendation accuracy. They combine several building blocks based on collaborative filtering and content‐based recommendation. This complexity can hinder the ability to explain recommendations to end users, which is particularly important for recommendations perceived as unexpected or inappropriate. While pure recommendation performance often correlates with user satisfaction, explainability has a positive impact on other factors such as trust and forgiveness, which are ultimately essential to maintain user loyalty. In this article, we discuss how explainability can be addressed in the context of MRSs. We provide perspectives on how explainability could improve music recommendation algorithms and enhance user experience. First, we review common dimensions and goals of recommenders explainability and in general of eXplainable Artificial Intelligence (XAI), and elaborate on the extent to which these apply—or need to be adapted—to the specific characteristics of music consumption and recommendation. Then, we show how explainability components can be integrated within a MRS and in what form explanations can be provided. Since the evaluation of explanation quality is decoupled from pure accuracy‐based evaluation criteria, we also discuss requirements and strategies for evaluating explanations of music recommendations. Finally, we describe the current challenges for introducing explainability within a large‐scale industrial MRS and provide research perspectives.
Optimizing next-generation sequencing efficiency in clinical settings: analysis of read length impact on cost and performance
Background The expansion of sequencing technologies as a result of the response to the COVID-19 pandemic enabled pathogen (meta)genomics to be deployed as a routine component of surveillance in many countries. Scaling genomic surveillance, however, comes with associated costs in both equipment and sequencing reagents, which should be optimized. Here, we evaluate the cost efficiency and performance of different read lengths in identifying pathogens in metagenomic samples. We carefully evaluated performance metrics, costs, and time requirements relative to choices of 75, 150 and 300 base pairs (bp) read lengths in pathogen identification. Results Our findings revealed that moving from 75 bp to 150 bp read length approximately doubles both the cost and sequencing time. Opting for 300 bp reads leads to approximately two- and three-fold increases, respectively, in cost and sequencing time compared to 75 bp reads. For viral pathogen detection, the sensitivity median ranged from 99% with 75 bp reads to 100% with 150–300 bp reads. However, bacterial pathogens detection was less effective with shorter reads: 87% with 75 bp, 95% with 150 bp, and 97% with 300 bp reads. These findings were consistent across different levels of taxa abundance. The precision of pathogen detection using shorter reads was comparable to that of longer reads across most viral and bacterial taxa. Conclusions During disease outbreak situations, when swift responses are required for pathogen identification, we suggest prioritizing 75 bp read lengths, especially if detection of viral pathogens is aimed. This practical approach allows better use of resources, enabling the sequencing of more samples using streamlined workflows, while maintaining a reliable response capability.
Design and implementation of a metagenomic analytical pipeline for respiratory pathogen detection
Objective We developed an in-house bioinformatics pipeline to improve the detection of respiratory pathogens in metagenomic sequencing data. This pipeline addresses the need for short-time analysis, high accuracy, scalability, and reproducibility in a high-performance computing environment. Results We evaluated our pipeline using ninety synthetic metagenomes designed to simulate nasopharyngeal swab samples. The pipeline successfully identified 177 out of 204 respiratory pathogens present in the compositions, with an average processing time of approximately 4 min per sample (processing 1 million paired-end reads of 150 base pairs). For the estimation of all the 470 taxa included in the compositions, the pipeline demonstrated high accuracy, identifying 420 and achieving a correlation of 0.9 between their actual and predicted relative abundances. Among the identified taxa, 27 were significantly underestimated or overestimated, including only three clinically relevant pathogens. We also validated the pipeline by applying it to a clinical dataset from a study on metagenomic pathogen characterization in patients with acute respiratory infections and successfully identified all pathogens responsible for the diagnosed infections. These findings underscore the pipeline’s effectiveness in pathogen detection and highlight its potential utility in respiratory pathogen surveillance.
The Flavonol Quercitrin Hinders GSK3 Activity and Potentiates the Wnt/β-Catenin Signaling Pathway
The Wnt/β-catenin signaling pathway dictates cell proliferation and differentiation during embryonic development and tissue homeostasis. Its deregulation is associated with many pathological conditions, including neurodegenerative disease, frequently downregulated. The lack of efficient treatment for these diseases, including Alzheimer’s disease (AD), makes Wnt signaling an attractive target for therapies. Interestingly, novel Wnt signaling activating compounds are less frequently described than inhibitors, turning the quest for novel positive modulators even more appealing. In that sense, natural compounds are an outstanding source of potential drug leads. Here, we combine different experimental models, cell-based approaches, neuronal culture assays, and rodent behavior tests with Xenopus laevis phenotypic analysis to characterize quercitrin, a natural compound, as a novel Wnt signaling potentiator. We find that quercitrin potentiates the signaling in a concentration-dependent manner and increases the occurrence of the Xenopus secondary axis phenotype mediated by Xwnt8 injection. Using a GSK3 biosensor, we describe that quercitrin impairs GSK3 activity and increases phosphorylated GSK3β S9 levels. Treatment with XAV939, an inhibitor downstream of GSK3, impairs the quercitrin-mediated effect. Next, we show that quercitrin potentiates the Wnt3a-synaptogenic effect in hippocampal neurons in culture, which is blocked by XAV939. Quercitrin treatment also rescues the hippocampal synapse loss induced by intracerebroventricular injection of amyloid-β oligomers (AβO) in mice. Finally, quercitrin rescues AβO-mediated memory impairment, which is prevented by XAV939. Thus, our study uncovers a novel function for quercitrin as a Wnt/β-catenin signaling potentiator, describes its mechanism of action, and opens new avenues for AD treatments.
Acetylcholinesterase: The “Hub” for Neurodegenerative Diseases and Chemical Weapons Convention
This article describes acetylcholinesterase (AChE), an enzyme involved in parasympathetic neurotransmission, its activity, and how its inhibition can be pharmacologically useful for treating dementia, caused by Alzheimer’s disease, or as a warfare method due to the action of nerve agents. The chemical concepts related to the irreversible inhibition of AChE, its reactivation, and aging are discussed, along with a relationship to the current international legislation on chemical weapons.
Molecular Modeling and In Vitro Studies of a Neutral Oxime as a Potential Reactivator for Acetylcholinesterase Inhibited by Paraoxon
The present work aimed to compare the small, neutral and monoaromatic oxime, isatin-3-oxime (isatin-O), to the commercial ones, pralidoxime (2-PAM) and obidoxime, in a search for a new potential reactivator for acetylcholinesterase (AChE) inhibited by the pesticide paraoxon (AChE/POX) as well as a novel potential scaffold for further synthetic modifications. The multicriteria decision methods (MCDM) allowed the identification of the best docking poses of those molecules inside AChE/POX for further molecular dynamic (MD) studies, while Ellman’s modified method enabled in vitro inhibition and reactivation assays. In corroboration with the theoretical studies, our experimental results showed that isatin-O have a reactivation potential capable of overcoming 2-PAM at the initial moments of the assay. Despite not achieving better results than obidoxime, this molecule is promising for being an active neutral oxime with capacity of crossing the blood–brain barrier (BBB), to reactivate AChE/POX inside the central and peripheral nervous systems. Moreover, the fact that isatin-O can also act as anticonvulsant makes this molecule a possible multipotent reactivator. Besides, the MCDM method showed to be an accurate method for the selection of the best docking poses generated in the docking studies.
Emotion-aware music tower blocks (EmoMTB ): an intelligent audiovisual interface for music discovery and recommendation
Music listening has experienced a sharp increase during the last decade thanks to music streaming and recommendation services. While they offer text-based search functionality and provide recommendation lists of remarkable utility, their typical mode of interaction is unidimensional, i.e., they provide lists of consecutive tracks, which are commonly inspected in sequential order by the user. The user experience with such systems is heavily affected by cognition biases (e.g., position bias, human tendency to pay more attention to first positions of ordered lists) as well as algorithmic biases (e.g., popularity bias, the tendency of recommender systems to overrepresent popular items). This may cause dissatisfaction among the users by disabling them to find novel music to enjoy. In light of such systems and biases, we propose an intelligent audiovisual music exploration system named EmoMTB  . It allows the user to browse the entirety of a given collection in a free nonlinear fashion. The navigation is assisted by a set of personalized emotion-aware recommendations, which serve as starting points for the exploration experience. EmoMTB   adopts the metaphor of a city, in which each track (visualized as a colored cube) represents one floor of a building. Highly similar tracks are located in the same building; moderately similar ones form neighborhoods that mostly correspond to genres. Tracks situated between distinct neighborhoods create a gradual transition between genres. Users can navigate this music city using their smartphones as control devices. They can explore districts of well-known music or decide to leave their comfort zone. In addition, EmoMTB    integrates an emotion-aware music recommendation system that re-ranks the list of suggested starting points for exploration according to the user’s self-identified emotion or the collective emotion expressed in EmoMTB  ’s Twitter channel. Evaluation of EmoMTB    has been carried out in a threefold way: by quantifying the homogeneity of the clustering underlying the construction of the city, by measuring the accuracy of the emotion predictor, and by carrying out a web-based survey composed of open questions to obtain qualitative feedback from users.
Exploring the Impact of 3-O-Methylquercetin on Wnt/β-Catenin Pathway Activity and Its Potential in Neural Processes
Background: The Wnt/β-catenin signaling pathway plays a pivotal role in embryonic development, maintenance of the central nervous system, and the formation of neuronal circuits. Disruption of this pathway is closely associated with oncogenesis and neurodegenerative diseases, notably Alzheimer’s disease. Flavonoids such as quercetin derivatives have emerged as promising neuroprotective agents. This study investigates the impact of 3-O-methylquercetin (3OMQ), a methylated quercetin metabolite, on Wnt/β-catenin signaling and its potential relevance in neurodegenerative disease models. Methods: The ability of 3OMQ to modulate Wnt/β-catenin activity was analyzed using a luciferase-based reporter assay in both neural and non-neural cell lines. Cell viability assays evaluated cytotoxicity at various concentrations. We mapped 3OMQ activity within the pathway using targeted cell signaling experiments. Docking and molecular dynamics simulations suggested glycogen synthase kinase 3β (GSK3β) as a putative target of 3OMQ. Finally, we employed a mouse model of acute amyloid-β oligomer (AβO) toxicity to assess the in vivo effects of 3OMQ on spatial memory and Wnt-related gene expression. Results: We compared the flavonoids quercitrin, quercetin, and 3-O-methylquercitrin (3OMQ) with pharmacologically active compounds in a gene reporter assay (TOPFLASH) using Wnt-sensitive RKO cells treated with Wnt3a-conditioned medium. XAV-939 and PNU-74654 showed inhibitory activity, while BIO, CHIR99021, quercitrin, and 3OMQ enhanced the Wnt/β-catenin pathway. Notably, 3OMQ potentiated this pathway at concentrations 5–10 times lower than quercitrin and outperformed 1 μM BIO at 10 μM without cytotoxicity, highlighting its remarkable potency. Mechanistically, 3OMQ acts downstream of initial membrane activation and upstream of the β-catenin destruction complex. Consistently, molecular docking indicates a strong interaction with GSK3, a central regulator of the pathway. In adult mice, 3OMQ administration prevented AβO-induced recognition memory deficits and favored normalization of Wnt-related gene expression. Conclusions: These findings identify 3OMQ as a potent positive modulator of the Wnt/β-catenin pathway, with both in vitro and in vivo neuroprotective effects. Targeting Wnt signaling with compounds such as 3OMQ holds promise for maintaining neuronal health and developing therapeutic strategies for neurodegenerative conditions.
New Italian records of Lichenophanes varius (Illiger, 1801) (Coleoptera, Bostrichidae)
Lichenophanes varius (Illiger, 1801) is a Turanic-European-Mediterranean species. In most of European countries, this species is protected at different levels and it is classified as \"NT\" (Near Threatened) in the IUCN European Red List of Saproxylic Beetles. In Italy, it is classified as \"EN\" (Endangered). Its larvae are saproxylophagous and develop in branches and rotting trunks of many broadleaved tree genera. Nevertheless, this beetle seems to attack only wood which is already invaded by the mycelia of Biscogniauxia spp. (Pyrenomycetes, Xylariaceae). The Italian distribution and ecology of L. varius are updated on the basis of recent records; the species is recorded for the first time from Calabria, where it was reared from Quercus frainetto Ten. which represent a new host-plant record for this beetle. Finally, the authors discuss the possibility that global warming can promote a resurgence of attacks from the above mentioned phytopathogenic fungi in Italian forests and, therefore, this climatic change can also favour the populations of this red-listed beetle. Keywords: Bostrichidae, Lichenophanes , protected areas, conservation, faunistic, host plants, Xylariaceae
Applying SMT-based verification to hardware/software partitioning in embedded systems
When performing hardware/software co-design for embedded systems, the problem of which functions of the system should be implemented in hardware (HW) or in software (SW) emerges. This problem is known as HW/SW partitioning. Over the last 10 years, a significant research effort has been carried out in this area. In this paper, we present two new approaches to solve the HW/SW partitioning problem by using verification techniques based on satisfiability modulo theories (SMT). We compare the results using the traditional technique of integer linear programming, specifically binary integer programming and a modern method of optimization by genetic algorithm. The experimental results show that SMT-based verification techniques can be effective in particular cases to solve the HW/SW partition problem optimally using a state-of-the-art model checker based on SMT solvers, when compared against traditional techniques.