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18
result(s) for
"Alkhodari, Mohanad"
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Detection of COVID-19 in smartphone-based breathing recordings: A pre-screening deep learning tool
2022
This study was sought to investigate the feasibility of using smartphone-based breathing sounds within a deep learning framework to discriminate between COVID-19, including asymptomatic, and healthy subjects. A total of 480 breathing sounds (240 shallow and 240 deep) were obtained from a publicly available database named Coswara. These sounds were recorded by 120 COVID-19 and 120 healthy subjects via a smartphone microphone through a website application. A deep learning framework was proposed herein that relies on hand-crafted features extracted from the original recordings and from the mel-frequency cepstral coefficients (MFCC) as well as deep-activated features learned by a combination of convolutional neural network and bi-directional long short-term memory units (CNN-BiLSTM). The statistical analysis of patient profiles has shown a significant difference (p-value: 0.041) for ischemic heart disease between COVID-19 and healthy subjects. The Analysis of the normal distribution of the combined MFCC values showed that COVID-19 subjects tended to have a distribution that is skewed more towards the right side of the zero mean (shallow: 0.59±1.74, deep: 0.65±4.35, p-value: <0.001). In addition, the proposed deep learning approach had an overall discrimination accuracy of 94.58% and 92.08% using shallow and deep recordings, respectively. Furthermore, it detected COVID-19 subjects successfully with a maximum sensitivity of 94.21%, specificity of 94.96%, and area under the receiver operating characteristic (AUROC) curves of 0.90. Among the 120 COVID-19 participants, asymptomatic subjects (18 subjects) were successfully detected with 100.00% accuracy using shallow recordings and 88.89% using deep recordings. This study paves the way towards utilizing smartphone-based breathing sounds for the purpose of COVID-19 detection. The observations found in this study were promising to suggest deep learning and smartphone-based breathing sounds as an effective pre-screening tool for COVID-19 alongside the current reverse-transcription polymerase chain reaction (RT-PCR) assay. It can be considered as an early, rapid, easily distributed, time-efficient, and almost no-cost diagnosis technique complying with social distancing restrictions during COVID-19 pandemic.
Journal Article
Neonatal sleep stage identification using long short-term memory learning system
2020
Neonatal sleep analysis at the neonatal intensive care units (NICU) is critical for the diagnosis of any brain growth risks during the early stages of life. In this paper, an investigation is carried out on the use of a long short-term memory (LSTM) learning system in automatic sleep stage scoring in neonates. The developed algorithm automatically classifies sleep stages based on inputs from a single channel EEG recording. Up to this date, only a single study have developed an approach for automatic sleep stage scoring in neonatal sleep signals using deep neural network (DNN). A total of 5095 sleep stages signals acquired from EEG recordings of the University of Pittsburgh are used in this study. The sleep stages are annotated by a medical doctor from the Pediatric Neurology Department of Case Western Reserve University for three neonatal sleep stages including the awake (W), active sleep (AS), and quiet sleep (QS) stages on every 60-s epoch. The signals are pre-processed through normalization and filtering. The resulted signals are divided following 4-, 6-, and 10-fold cross-validation schemes. The training and classification process is done using a bi-directional LSTM network classifier built with pre-defined training parameters. At the end, the developed algorithm is evaluated along with a complete summary table that reports the results of this study and other state-of-the-art studies. The current study achieved high levels of Cohen’s kappa (κ), accuracy, and F1 score with 91.37%, 96.81%, and 94.43%, respectively. Based on the confusion matrix, the overall true positives percentage reached 95.21%. The developed algorithm gave promising results in automatic sleep stage scoring in neonatal sleep signals. Future work include LSTM architecture and training parameters improvements to enhance the overall accuracy of the classifier.
Journal Article
Monitoring Bone Density Using Microwave Tomography of Human Legs: A Numerical Feasibility Study
2021
A major cause of bone mass loss worldwide is osteoporosis. X-ray is considered to be the gold-standard technique to diagnose this disease. However, there is currently a need for an alternative modality due to the ionizing radiations used in X-rays. In this vein, we conducted a numerical study herein to investigate the feasibility of using microwave tomography (MWT) to detect bone density variations that are correlated to variations in the complex relative permittivity within the reconstructed images. This study was performed using an in-house finite-element method contrast source inversion algorithm (FEM-CSI). Three anatomically-realistic human leg models based on magnetic resonance imaging reconstructions were created. Each model represents a leg with a distinct fat layer thickness; thus, the three models are for legs with thin, medium, and thick fat layers. In addition to using conventional matching media in the numerical study, the use of commercially available and cheap ultrasound gel was evaluated prior to bone image analysis. The inversion algorithm successfully localized bones in the thin and medium fat scenarios. In addition, bone volume variations were found to be inversely proportional to their relative permittivity in the reconstructed images with the root mean square error as low as 2.54. The observations found in this study suggest MWT as a promising bone imaging modality owing to its safe and non-ionizing radiations used in imaging objects with high quality.
Journal Article
Diabetic foot ulcer mobile detection system using smart phone thermal camera: a feasibility study
by
Saleh, Adel
,
Ghazal, Mohammed
,
Ninan, Jolu
in
Biomaterials
,
Biomedical Engineering and Bioengineering
,
Biomedical Engineering/Biotechnology
2017
Background
Nowadays, the whole world is being concerned with a major health problem, which is diabetes. A very common symptom of diabetes is the diabetic foot ulcer (DFU). The early detection of such foot complications can protect diabetic patients from any dangerous stages that develop later and may require foot amputation. This work aims at building a mobile thermal imaging system that can be used as an indicator for possible developing ulcers.
Methods
The proposed system consists of a thermal camera connected to a Samsung smart phone, which is used to acquire thermal images. This thermal imaging system has a simulated temperature gradient of more than 2.2 °C, which represents the temperature difference (in the literature) than can indicate a possible development of ulcers. The acquired images are processed and segmented using basic image processing techniques. The analysis and interpretation is conducted using two techniques: Otsu thresholding technique and Point-to-Point mean difference technique.
Results
The proposed system was implemented under MATLAB Mobile platform and thermal images were analyzed and interpreted. Four testing images (feet images) were used to test this procedure; one image with any temperature variation to the feet, and three images with skin temperature increased to more than 2.2 °C introduced at different locations. With the two techniques applied during the analysis and interpretation stage, the system was successful in identifying the location of the temperature increase.
Conclusion
This work successfully implemented a mobile thermal imaging system that includes an automated method to identify possible ulcers in diabetic patients. This may give diabetic patients the ability for a frequent self-check of possible ulcers. Although this work was implemented in simulated conditions, it provides the necessary feasibility to be further developed and tested in a clinical environment.
Journal Article
A two-step pre-processing tool to remove Gaussian and ectopic noise for heart rate variability analysis
by
Jelinek, Herbert F.
,
Khandoker, Ahsan H.
,
Hadjileontiadis, Leontios J.
in
639/166/985
,
692/4019
,
692/53
2022
Artifacts in the Electrocardiogram (ECG) degrade the quality of the recorded signal and are not conducive to heart rate variability (HRV) analysis. The two types of noise most often found in ECG recordings are technical and physiological artifacts. Current preprocessing methods primarily attend to ectopic beats but do not consider technical issues that affect the ECG. A secondary aim of this study was to investigate the effect of increasing increments of artifacts on 24 of the most used HRV measures. A two-step preprocessing approach for denoising HRV is introduced which targets each type of noise separately. First, the technical artifacts in the ECG are eliminated by applying complete ensemble empirical mode decomposition with adaptive noise. The second step removes physiological artifacts from the HRV signal using a combination filter of single dependent rank order mean and an adaptive filtering algorithm. The performance of the two-step pre-processing tool showed a high correlation coefficient of 0.846 and RMSE value of 7.69 × 10
–5
for 6% of added ectopic beats and 6 dB Gaussian noise. All HRV measures studied except HF peak and LF peak are significantly affected by both types of noise. Frequency measures of Total power, HF power, and LF power and fragmentation measures; PAS, PIP, and PSS are the most sensitive to both types of noise.
Journal Article
Using prior information to enhance microwave tomography images in bone health assessment
2022
Background
Osteoporosis is the major cause of bone weakness and fragility in more than 10 million people in the United States. This disease causes bone fractures in the hip or spine, which result in increasing the risk of disabilities or even death. The current gold standard in osteoporosis diagnostics, X-ray, although reliable, it uses ionizing radiations that makes it unfeasible for early and continuous monitoring applications. Recently, microwave tomography (MWT) has been emerging as a biomedical imaging modality that utilizes non-ionizing electromagnetic signals to screen bones’ electrical properties. These properties are highly correlated to bones’ density, which makes MWT to be an effective and safe alternative for frequent testing in osteoporosis diagnostics.
Results
Both the conventional and wearable simulated systems were successful in localizing the tibia and fibula bones in the enhanced MWT images. Furthermore, structure extraction of the leg’s model from the blind MWT images had a minimal error compared to the original one (L2-norm: 15.60%). Under five sequentially incremental bone volume fraction (BVF) scenarios simulating bones’ treatment procedure, bones were detected successfully and their densities were found to be inversely proportional to the real part of the relative permittivity values.
Conclusions
This study paves the way towards implementing a safe and user-friendly MWT system that can be wearable to monitor bone degradation or treatment for osteoporosis cases.
Methods
An anatomically realistic finite-element (FE) model representing the human leg was initially generated and filled with corresponding tissues’ (skin, fat, muscles, and bones) dielectric properties. Then, numerically, the forward and inverse MWT problems were solved within the framework of the finite-element method-contrast source inversion algorithm (FEM-CSI). Furthermore, image reconstruction enhancements were investigated by utilizing prior information about different tissues as an inhomogeneous background as well as by adjusting the imaging domain and antennas locations based on the prior structural information. In addition, the utilization of a medically approved matching medium that can be used in wearable applications, namely an ultrasound gel, was suggested. Additionally, an approach based on k-means clustering was developed to extract the prior structural information from blind reconstructions. Finally, the enhanced images were used to monitor variations in BVF.
Graphical Abstract
Journal Article
Investigating the effects of beta-blockers on circadian heart rhythm using heart rate variability in ischemic heart disease with preserved ejection fraction
by
Jelinek, Herbert F.
,
Khandoker, Ahsan H.
,
Hadjileontiadis, Leontios J.
in
692/4019/592/75/230
,
692/53/2423
,
Adrenergic beta-Antagonists - pharmacology
2023
Heart failure is characterized by sympathetic activation and parasympathetic withdrawal leading to an abnormal autonomic modulation. Beta-blockers (BB) inhibit overstimulation of the sympathetic system and are indicated in heart failure patients with reduced ejection fraction. However, the effect of beta-blocker therapy on heart failure with preserved ejection fraction (HFpEF) is unclear. ECGs of 73 patients with HFpEF > 55% were recruited. There were 56 patients in the BB group and 17 patients in the without BB (NBB) group. The HRV analysis was performed for the 24-h period using a window size of 1,4 and 8-h. HRV measures between day and night for both the groups were also compared. Percentage change in the BB group relative to the NBB group was used as a measure of difference. RMSSD (13.27%), pNN50 (2.44%), HF power (44.25%) and LF power (13.53%) showed an increase in the BB group relative to the NBB group during the day and were statistically significant between the two groups for periods associated with high cardiac risk during the morning hours. LF:HF ratio showed a decrease of 3.59% during the day. The relative increase in vagal modulated RMSSD, pNN50 and HF power with a decrease in LF:HF ratio show an improvement in the parasympathetic tone and an overall decreased risk of a cardiac event especially during the morning hours that is characterized by a sympathetic surge.
Journal Article
Prediction of fetal RR intervals from maternal factors using machine learning models
by
Kasahara, Yoshiyuki
,
Saito, Masatoshi
,
Yoshida, Chihiro
in
639/166/985
,
692/700/1720/3187
,
Abdomen
2023
Previous literature has highlighted the importance of maternal behavior during the prenatal period for the upbringing of healthy adults. During pregnancy, fetal health assessments are mainly carried out non-invasively by monitoring fetal growth and heart rate (HR) or RR interval (RRI). Despite this, research entailing prediction of fHRs from mHRs is scarce mainly due to the difficulty in non-invasive measurements of fetal electrocardiogram (fECG). Also, so far, it is unknown how mHRs are associated with fHR over the short term. In this study, we used two machine learning models, support vector regression (SVR) and random forest (RF), for predicting average fetal RRI (fRRI). The predicted fRRI values were compared with actual fRRI values calculated from non-invasive fECG. fRRI was predicted from 13 maternal features that consisted of age, weight, and non-invasive ECG-derived parameters that included HR variability (HRV) and R wave amplitude variability. 156 records were used for training the models and the results showed that the SVR model outperformed the RF model with a root mean square error (RMSE) of 29 ms and an average error percentage (< 5%). Correlation analysis between predicted and actual fRRI values showed that the Spearman coefficient for the SVR and RF models were 0.31 (
P
< 0.001) and 0.19 (
P
< 0.05), respectively. The SVR model was further used to predict fRRI of 14 subjects who were not included in the training. The latter prediction results showed that individual error percentages were (≤ 5%) except in 3 subjects. The results of this study show that maternal factors can be potentially used for the assessment of fetal well-being based on fetal HR or RRI.
Journal Article
Investigating automated regression models for estimating left ventricular ejection fraction levels in heart failure patients using circadian ECG features
by
Arsenos, Petros
,
Soulaidopoulos, Stergios
,
Doundoulakis, Ioannis
in
Artificial intelligence
,
Biology and Life Sciences
,
Cardiac arrhythmia
2023
Heart Failure (HF) significantly impacts approximately 26 million people worldwide, causing disruptions in the normal functioning of their hearts. The estimation of left ventricular ejection fraction (LVEF) plays a crucial role in the diagnosis, risk stratification, treatment selection, and monitoring of heart failure. However, achieving a definitive assessment is challenging, necessitating the use of echocardiography. Electrocardiogram (ECG) is a relatively simple, quick to obtain, provides continuous monitoring of patient’s cardiac rhythm, and cost-effective procedure compared to echocardiography. In this study, we compare several regression models (support vector machine (SVM), extreme gradient boosting (XGBOOST), gaussian process regression (GPR) and decision tree) for the estimation of LVEF for three groups of HF patients at hourly intervals using 24-hour ECG recordings. Data from 303 HF patients with preserved, mid-range, or reduced LVEF were obtained from a multicentre cohort (American and Greek). ECG extracted features were used to train the different regression models in one-hour intervals. To enhance the best possible LVEF level estimations, hyperparameters tuning in nested loop approach was implemented (the outer loop divides the data into training and testing sets, while the inner loop further divides the training set into smaller sets for cross-validation). LVEF levels were best estimated using rational quadratic GPR and fine decision tree regression models with an average root mean square error (RMSE) of 3.83% and 3.42%, and correlation coefficients of 0.92 (p<0.01) and 0.91 (p<0.01), respectively. Furthermore, according to the experimental findings, the time periods of midnight-1 am, 8–9 am, and 10–11 pm demonstrated to be the lowest RMSE values between the actual and predicted LVEF levels. The findings could potentially lead to the development of an automated screening system for patients with coronary artery disease (CAD) by using the best measurement timings during their circadian cycles.
Journal Article
Deep learning identifies cardiac coupling between mother and fetus during gestation
2022
In the last two decades, stillbirth has caused around 2 million fetal deaths worldwide. Although current ultrasound tools are reliably used for the assessment of fetal growth during pregnancy, it still raises safety issues on the fetus, requires skilled providers, and has economic concerns in less developed countries. Here, we propose deep coherence, a novel artificial intelligence (AI) approach that relies on 1 min non-invasive electrocardiography (ECG) to explain the association between maternal and fetal heartbeats during pregnancy. We validated the performance of this approach using a trained deep learning tool on a total of 941 one minute maternal-fetal R-peaks segments collected from 172 pregnant women (20–40 weeks). The high accuracy achieved by the tool (90%) in identifying coupling scenarios demonstrated the potential of using AI as a monitoring tool for frequent evaluation of fetal development. The interpretability of deep learning was significant in explaining synchronization mechanisms between the maternal and fetal heartbeats. This study could potentially pave the way toward the integration of automated deep learning tools in clinical practice to provide timely and continuous fetal monitoring while reducing triage, side-effects, and costs associated with current clinical devices.
Journal Article