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result(s) for
"Andrew Bjonnes"
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Two-Stage Hybrid Optimization of Topology and Infill Density in Polymer Extrusion Additive Manufacturing for Lightweight High-Integrity Structures
by
Rane, Kedarnath
,
Bjonnes, Andrew
,
Walker, Dickon
in
3D printing
,
Additive manufacturing
,
Carbon fiber reinforcement
2025
Material Extrusion (MEX) additive manufacturing offers a versatile platform for producing lightweight, structurally optimized components. This study investigates the simultaneous optimization of topology and infill density using three polymer composite materials, PPA-CF, PAHT-CF, and ABS, selected for their mechanical performance, cost efficiency, and printability. Cylindrical specimens were fabricated with nine mass retention levels (100% to 33%) by systematically varying topology and infill parameters. Compression testing was conducted to assess stiffness, deformation behavior, and structural integrity under simulated operational loads. Results show that combining topology optimization with variable infill density can significantly reduce material usage and manufacturing time while maintaining mechanical reliability across all three materials. PAHT-CF demonstrated the highest strength-to-weight performance, while ABS offered cost-effective alternatives for less demanding applications. The study establishes clear relationships between design strategies and material behavior, enabling the production of net-shape satellite support structures with fewer design iterations and improved throughput. These findings support the adoption of resource-efficient manufacturing practices and provide a framework for sustainable, low- to mid-volume production in high-value manufacturing industries. Overall, the integration of design and material optimization advances the potential of additive manufacturing for scalable, cost-effective, and environmentally conscious aerospace solutions.
Journal Article
Genetic Associations with Obstructive Sleep Apnea Traits in Hispanic/Latino Americans
2016
Obstructive sleep apnea is a common disorder associated with increased risk for cardiovascular disease, diabetes, and premature mortality. Although there is strong clinical and epidemiologic evidence supporting the importance of genetic factors in influencing obstructive sleep apnea, its genetic basis is still largely unknown. Prior genetic studies focused on traits defined using the apnea-hypopnea index, which contains limited information on potentially important genetically determined physiologic factors, such as propensity for hypoxemia and respiratory arousability.
To define novel obstructive sleep apnea genetic risk loci for obstructive sleep apnea, we conducted genome-wide association studies of quantitative traits in Hispanic/Latino Americans from three cohorts.
Genome-wide data from as many as 12,558 participants in the Hispanic Community Health Study/Study of Latinos, Multi-Ethnic Study of Atherosclerosis, and Starr County Health Studies population-based cohorts were metaanalyzed for association with the apnea-hypopnea index, average oxygen saturation during sleep, and average respiratory event duration.
Two novel loci were identified at genome-level significance (rs11691765, GPR83, P = 1.90 × 10
for the apnea-hypopnea index, and rs35424364; C6ORF183/CCDC162P, P = 4.88 × 10
for respiratory event duration) and seven additional loci were identified with suggestive significance (P < 5 × 10
). Secondary sex-stratified analyses also identified one significant and several suggestive associations. Multiple loci overlapped genes with biologic plausibility.
These are the first genome-level significant findings reported for obstructive sleep apnea-related physiologic traits in any population. These findings identify novel associations in inflammatory, hypoxia signaling, and sleep pathways.
Journal Article
Chronotype Genetic Variant in PER2 is Associated with Intrinsic Circadian Period in Humans
2019
The
PERIOD2
(
PER2
) gene is a core molecular component of the circadian clock and plays an important role in the generation and maintenance of daily rhythms. Rs35333999, a missense variant of
PER2
common in European populations, has been shown to associate with later chronotype. Chronotype relates to the timing of biological and behavioral activities, including when we sleep, eat, and exercise, and later chronotype is associated with longer intrinsic circadian period (cycle length), a fundamental property of the circadian system. Thus, we tested whether this
PER2
variant was associated with circadian period and found significant associations with longer intrinsic circadian period as measured under forced desynchrony protocols, the ‘gold standard’ for intrinsic circadian period assessment. Minor allele (T) carriers exhibited significantly longer circadian periods when determinations were based on either core body temperature or plasma melatonin measurements, as compared to non-carriers (by 12 and 11 min, respectively; accounting for ~7% of inter-individual variance). These findings provide a possible underlying biological mechanism for inter-individual differences in chronotype, and support the central role of
PER2
in the human circadian timing system.
Journal Article
Causal mechanisms and balancing selection inferred from genetic associations with polycystic ovary syndrome
by
Dunger, David B.
,
Broer, Linda
,
Meun, Cindy
in
631/208/205/2138
,
692/699/2743/1526/1744
,
Acid Anhydride Hydrolases
2015
Polycystic ovary syndrome (PCOS) is the most common reproductive disorder in women, yet there is little consensus regarding its aetiology. Here we perform a genome-wide association study of PCOS in up to 5,184 self-reported cases of White European ancestry and 82,759 controls, with follow-up in a further ∼2,000 clinically validated cases and ∼100,000 controls. We identify six signals for PCOS at genome-wide statistical significance (
P
<5 × 10
−8
), in/near genes
ERBB4/HER4
,
YAP1
,
THADA
,
FSHB
,
RAD50
and
KRR1.
Variants in/near three of the four epidermal growth factor receptor genes (
ERBB2/HER2
,
ERBB3/HER3
and
ERBB4/HER4)
are associated with PCOS at or near genome-wide significance. Mendelian randomization analyses indicate causal roles in PCOS aetiology for higher BMI (
P
=2.5 × 10
−9
), higher insulin resistance (
P
=6 × 10
−4
) and lower serum sex hormone binding globulin concentrations (
P
=5 × 10
−4
). Furthermore, genetic susceptibility to later menopause is associated with higher PCOS risk (
P
=1.6 × 10
−8
) and PCOS-susceptibility alleles are associated with higher serum anti-Müllerian hormone concentrations in girls (
P
=8.9 × 10
−5
). This large-scale study implicates an aetiological role of the epidermal growth factor receptors, infers causal mechanisms relevant to clinical management and prevention, and suggests balancing selection mechanisms involved in PCOS risk.
This paper describes the largest genome-wide association study to date on polycystic ovary syndrome (PCOS), a common reproductive disorder in women. Six genetic loci—including known targets of cancer chemotherapy—were identified, and the authors infer causal and balancing selection mechanisms involved in PCOS risk and susceptibility.
Journal Article
Loss of function mutation in LOX causes thoracic aortic aneurysm and dissection in humans
by
Stitziel, Nathan O.
,
Lee, Vivian S.
,
Leshchiner, Ignaty
in
Adult
,
Aged
,
Aneurysm, Dissecting - enzymology
2016
Thoracic aortic aneurysms and dissections (TAAD) represent a substantial cause of morbidity and mortality worldwide. Many individuals presenting with an inherited form of TAAD do not have causal mutations in the set of genes known to underlie disease. Using whole-genome sequencing in two first cousins with TAAD, we identified a missense mutation in the lysyl oxidase (LOX) gene (c.893T > G encoding p.Met298Arg) that cosegregated with disease in the family. Using clustered regularly interspaced short palindromic repeats (CRISPR)/clustered regularly interspaced short palindromic repeats-associated protein-9 nuclease (Cas9) genome engineering tools, we introduced the human mutation into the homologous position in the mouse genome, creating mice that were heterozygous and homozygous for the human allele. Mutant mice that were heterozygous for the human allele displayed disorganized ultrastructural properties of the aortic wall characterized by fragmented elastic lamellae, whereas mice homozygous for the human allele died shortly after parturition from ascending aortic aneurysm and spontaneous hemorrhage. These data suggest that a missense mutation in LOX is associated with aortic disease in humans, likely through insufficient cross-linking of elastin and collagen in the aortic wall. Mutation carriers may be predisposed to vascular diseases because of weakened vessel walls under stress conditions. LOX sequencing for clinical TAAD may identify additional mutation carriers in the future. Additional studies using our mouse model of LOX-associated TAAD have the potential to clarify the mechanism of disease and identify novel therapeutics specific to this genetic cause.
Journal Article
Genome-Wide Association Study Identifies a Novel Locus Contributing to Type 2 Diabetes Susceptibility in Sikhs of Punjabi Origin From India
by
Cho, Yoon S.
,
Tai, E. Shyong
,
Morris, Andrew P.
in
Asian People
,
Biological and medical sciences
,
Cardiovascular disease
2013
We performed a genome-wide association study (GWAS) and a multistage meta-analysis of type 2 diabetes (T2D) in Punjabi Sikhs from India. Our discovery GWAS in 1,616 individuals (842 case subjects) was followed by in silico replication of the top 513 independent single nucleotide polymorphisms (SNPs) (P < 10−3) in Punjabi Sikhs (n = 2,819; 801 case subjects). We further replicated 66 SNPs (P < 10−4) through genotyping in a Punjabi Sikh sample (n = 2,894; 1,711 case subjects). On combined meta-analysis in Sikh populations (n = 7,329; 3,354 case subjects), we identified a novel locus in association with T2D at 13q12 represented by a directly genotyped intronic SNP (rs9552911, P = 1.82 × 10−8) in the SGCG gene. Next, we undertook in silico replication (stage 2b) of the top 513 signals (P < 10−3) in 29,157 non-Sikh South Asians (10,971 case subjects) and de novo genotyping of up to 31 top signals (P < 10−4) in 10,817 South Asians (5,157 case subjects) (stage 3b). In combined South Asian meta-analysis, we observed six suggestive associations (P < 10−5 to < 10−7), including SNPs at HMG1L1/CTCFL, PLXNA4, SCAP, and chr5p11. Further evaluation of 31 top SNPs in 33,707 East Asians (16,746 case subjects) (stage 3c) and 47,117 Europeans (8,130 case subjects) (stage 3d), and joint meta-analysis of 128,127 individuals (44,358 case subjects) from 27 multiethnic studies, did not reveal any additional loci nor was there any evidence of replication for the new variant. Our findings provide new evidence on the presence of a population-specific signal in relation to T2D, which may provide additional insights into T2D pathogenesis.
Journal Article
Multiethnic Meta-Analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea–related Quantitative Trait Locus in Men
by
Katie L. Stone
,
Sutapa Mukherjee
,
Alexander Teumer
in
2.1 Biological and endogenous factors
,
Adult
,
Adult; Aged; Female; Genome-Wide Association Study; Humans; Male; Middle Aged; Phosphatidylethanolamine N-Methyltransferase/genetics; Quantitative Trait Loci/genetics; Sex Characteristics; Sleep Apnea, Obstructive/genetics; Sleep, REM/physiology; Sterol Regulatory Element Binding Protein 1/genetics; Transcription Factors/genetics; ras Proteins/genetics; genetics; genome-wide association studies; multiethnic; obstructive sleep apnea; sexual dimorphism
2018
Obstructive sleep apnea (OSA) is a common heritable disorder displaying marked sexual dimorphism in disease prevalence and progression. Previous genetic association studies have identified a few genetic loci associated with OSA and related quantitative traits, but they have only focused on single ethnic groups, and a large proportion of the heritability remains unexplained. The apnea–hypopnea index (AHI) is a commonly used quantitative measure characterizing OSA severity. Because OSA differs by sex, and the pathophysiology of obstructive events differ in rapid eye movement (REM) and non-REM (NREM) sleep, we hypothesized that additional genetic association signals would be identified by analyzing the NREM/REM-specific AHI and by conducting sex-specific analyses in multiethnic samples. We performed genome-wide association tests for up to 19,733 participants of African, Asian, European, and Hispanic/Latino American ancestry in 7 studies. We identified rs12936587 on chromosome 17 as a possible quantitative trait locus for NREM AHI in men (N = 6,737; P = 1.7 × 10−8) but not in women (P = 0.77). The association with NREM AHI was replicated in a physiological research study (N = 67; P = 0.047). This locus overlapping the RAI1 gene and encompassing genes PEMT1, SREBF1, and RASD1 was previously reported to be associated with coronary artery disease, lipid metabolism, and implicated in Potocki–Lupski syndrome and Smith-Magenis syndrome, which are characterized by abnormal sleep phenotypes. We also identified gene-by-sex interactions in suggestive association regions, suggesting that genetic variants for AHI appear to vary by sex, consistent with the clinical observations of strong sexual dimorphism.
Journal Article
Genetic Predisposition to Dyslipidemia and Risk of Preeclampsia
by
Saftlas, Audrey F.
,
Saxena, Richa
,
Robinson, Jennifer G.
in
Adult
,
Biomarkers - blood
,
Blood Pressure
2015
BACKGROUND
Large epidemiologic studies support the role of dyslipidemia in preeclampsia; however, the etiology of preeclampsia or whether dyslipidemia plays a causal role remains unclear. We examined the association between the genetic predisposition to dyslipidemia and risk of preeclampsia using validated genetic markers of dyslipidemia.
METHODS
Preeclampsia cases (n = 164) and normotensive controls (n = 110) were selected from live birth certificates to nulliparous Iowa women during the period August 2002 to May 2005. Disease status was verified by medical chart review. Genetic predisposition to dyslipidemia was estimated by 4 genetic risk scores (GRS) (total cholesterol (TC), LDL cholesterol (LDL-C), HDL cholesterol (HDL-C), and triglycerides) on the basis of established loci for blood lipids. Logistic regression analyses were used to evaluate the relationships between each of the 4 genotype scores and preeclampsia. Replication analyses were performed in an independent, US population of preeclampsia cases (n = 516) and controls (n = 1,097) of European ancestry.
RESULTS
The GRS related to higher levels of TC, LDL-C, and triglycerides demonstrated no association with the risk of preeclampsia in either the Iowa or replication population. The GRS related to lower HDL-C was marginally associated with an increased risk for preeclampsia (odds ratio (OR) = 1.03, 95% confidence interval (CI) = 0.99–1.07; P = 0.10). In the independent replication population, the association with the HDL-C GRS was also marginally significant (OR = 1.03, 95% CI: 1.00–1.06; P = 0.04).
CONCLUSIONS
Our data suggest a potential effect between the genetic predisposition to dyslipidemic levels of HDL-C and an increased risk of preeclampsia, and, as such, suggest that dyslipidemia may be a component along the causal pathway to preeclampsia.
Journal Article
An integrated clinical program and crowdsourcing strategy for genomic sequencing and Mendelian disease gene discovery
by
Briere, Lauren C
,
Seidman, Christine E
,
Sutti, Sheila
in
Crowdsourcing
,
Interdisciplinary aspects
2018
Despite major progress in defining the genetic basis of Mendelian disorders, the molecular etiology of many cases remains unknown. Patients with these undiagnosed disorders often have complex presentations and require treatment by multiple health care specialists. Here, we describe an integrated clinical diagnostic and research program using whole-exome and whole-genome sequencing (WES/WGS) for Mendelian disease gene discovery. This program employs specific case ascertainment parameters, a WES/WGS computational analysis pipeline that is optimized for Mendelian disease gene discovery with variant callers tuned to specific inheritance modes, an interdisciplinary crowdsourcing strategy for genomic sequence analysis, matchmaking for additional cases, and integration of the findings regarding gene causality with the clinical management plan. The interdisciplinary gene discovery team includes clinical, computational, and experimental biomedical specialists who interact to identify the genetic etiology of the disease, and when so warranted, to devise improved or novel treatments for affected patients. This program effectively integrates the clinical and research missions of an academic medical center and affords both diagnostic and therapeutic options for patients suffering from genetic disease. It may therefore be germane to other academic medical institutions engaged in implementing genomic medicine programs.
Journal Article