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Relatively few studies have extensively analysed the genetic diversity of the runner bean through molecular markers. Here, we used six chloroplast microsatellites (cpSSRs) to investigate the cytoplasmic diversity of 331 European domesticated accessions of the scarlet runner bean (Phaseolus coccineus L.), including the botanical varieties albiflorus, bicolor and coccineus, and a sample of 49 domesticated and wild accessions from Mesoamerica. We further explored the pattern of diversity of the European landraces using 12 phenotypic traits on 262 individuals. For 158 European accessions, we studied the relationships between cpSSR polymorphisms and phenotypic traits. Additionally, to gain insights into the role of gene flow and migration, for a subset of 115 accessions, we compared and contrasted the results obtained by cpSSRs and phenotypic traits with those obtained in a previous study with 12 nuclear microsatellites (nuSSRs). Our results suggest that both demographic and selective factors have roles in the shaping of the population genetic structure of the European runner bean. In particular, we infer the existence of a moderate-to-strong cytoplasmic bottleneck that followed the expansion of the crop into Europe, and we deduce multiple domestication events for this species. We also observe an adaptive population differentiation in the phenology across a latitudinal gradient, which suggests that selection led to the diversification of the runner bean in Europe. The botanical varieties albiflorus, bicolor and coccineus, which are based solely on flower colour, cannot be distinguished based on these cpSSRs and nuSSRs, nor according to the 12 quantitative traits.

Schmallenberg virus (SBV), an Orthobunyavirus transmitted by Culicoides, causes congenital malformations and mild symptoms, such as fever, reduced appetite, decreased milk production, and occasional diarrhea, in ruminants. First detected in Central Europe in 2011, SBV spread across the continent, reaching Sardinia (Italy) in late 2012. This study evaluates the occurrence of SBV infections in Sardinian sheep from 2013 to 2024 by anatomo-pathological, virological, serological, and entomological data. The results suggest the presence of SBV infections in a continuous enzootic status over the years, without the cyclic waves observed in other countries, likely due to the unique sheep breeding management in Sardinia. Seroprevalence rates in the years 2022 and 2024 varied between 16.40% (C.I. = 12.28–20.52) and 21.53% (C.I. = 17.15–25.91) without significant differences between the two years analyzed. SBV was predominantly detected in C. imicola and C. newsteadi populations, while C. cataneii and C. sahariensis were identified as potential new vectors. Additionally, S- and M-segment sequences were obtained from two SBV isolates, S-sequences from a sample detected in 2020, and 21 archived cDNA samples from 2012. The S-segments showed high similarity among themselves and the reference strains, while the M sequences were significantly different, although potential artifacts from fetal samples must be considered. Overall, the results suggest widespread enzootic SBV circulation in Sardinia over the past decade, with a very low frequency of malformations in newly born sheep offspring.

Understanding how geography and human mobility shape the patterns and spread of infectious diseases such as COVID-19 is key to control future epidemics. An interesting example is provided by the second wave of the COVID-19 epidemic in Europe, which was facilitated by the intense movement of tourists around the Mediterranean coast in summer 2020. The Italian island of Sardinia is a major tourist destination and is widely believed to be the origin of the second Italian wave. In this study, we characterize the genetic variation among SARS-CoV-2 strains circulating in northern Sardinia during the first and second Italian waves using both Illumina and Oxford Nanopore Technologies Next Generation Sequencing methods. Most viruses were placed into a single clade, implying that despite substantial virus inflow, most outbreaks did not spread widely. The second epidemic wave on the island was actually driven by local transmission of a single B.1.177 subclade. Phylogeographic analyses further suggest that those viral strains circulating on the island were not a relevant source for the second epidemic wave in Italy. This result, however, does not rule out the possibility of intense mixing and transmission of the virus among tourists as a major contributor to the second Italian wave.