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result(s) for
"Azizi, Mohammad R"
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Psychological distress among Iranian health-care providers exposed to coronavirus disease 2019 (COVID-19): a qualitative study
2020
Background
Novel corona virus, named COVID-19, has spread rapidly to other countries like Italy, Iran and South Korea and affected all people, especially health-care providers. Therefore, due to the rapid spread of the disease in Iran, the aim of the present study was to explore psychological distress experienced by Iranian health-care providers in the first few weeks of the corona virus outbreak.
Methods
The present qualitative study was conducted on 18 Iranian health-care providers exposed to COVID − 19 using a content analysis method. Purposeful sampling was used to select the participants and continued until data saturation was reached. Data were collected using semi-structured interviews and then the qualitative data were analyzed through direct content analysis.
Results
By analyzing 236 primary codes, two main categories were extracted from the experiences of health-care providers during corona virus outbreak. The first category included Occupational demands with three sub-categories: nature of illness, Organizational demands and social demands. The second category was Supportive resources included personal support and social support.
Conclusions
The results of this study found that there were some barriers and challenges to medical personnel exposed to COVID-19 that caused psychological distress. Some of these problems related to the nature of illness, others related to social and organizational demands and some of supportive resources buffer the relationship between occupational demands and psychological distress.
Journal Article
The integrative multi-omics approach identifies the novel competing endogenous RNA (ceRNA) network in colorectal cancer
2023
Circular RNAs (circRNA) are known to function as competing endogenous RNA (ceRNA) in various cancers by regulating microRNAs (miRNA). However, in colorectal cancer (CRC), the precise pathological role of circ000240/miRNA/mRNA remains indeterminate. The expression level of hsa_circ_000240 was evaluated using qRT-PCR in matching pairs of CRC tumor and adjacent normal tissue samples in our laboratory. Then, to determine whether hsa_circ_000240 acted as a ceRNA in CRC, the linked miRNAs and gene targets were retrieved. Topological analysis of candidate genes using a network approach identified the most critical hub genes and subnetworks related to CRC disease. Microarray and bulk RNA sequencing analyses were utilized to comprehensively evaluate the expression levels of both miRNA and mRNA in CRC. Single-cell RNA-seq analysis was also used to evaluate the significant overall survival (OS) genes at the cellular level. ATAC-seq data provided insights into candidate genes' accessible chromatin regions. The research uncovered a considerable upregulation of hsa_circ_000240 in CRC tissues. Three miRNAs interacted with the target circRNA. One thousand six hundred eighty intersected genes regulated by three miRNAs were further identified, and the relevant functionality of identified neighbor genes highlighted their relevance to cancer. The topological analysis of the constructed network has identified 33 hub genes with notably high expression in CRC. Among these genes, eight, including CHEK1, CDC6, FANCI, GINS2, MAD2L1, ORC1, RACGAP1, and SMC4, have demonstrated a significant impact on overall survival. The utilization of single-cell RNA sequencing unequivocally corroborated the augmented expression levels of CDC6 and ORC1 in individuals with CRC, alongside their noteworthy connection with the infiltration of immune cells. ATAC-seq analyses revealed altered accessibility regions in Chr2, 4, and 12 for CDC6 and ORC1 high-expression. Correlation analysis of CDC6 and ORC1 further highlighted the association of candidate gene expression with exhaustion markers such as CTLA4, CD247, TIGIT, and CD244. The candidate genes exhibit a positive correlation with chromatin remodeling and histone acetylation. These epigenetic modifications play a significant role in influencing the cancer progression following expression of CDC6 and ORC1 in CRC. Additionally, results showed that the methylation rate of the promoter region of CDC6 was elevated in CRC disease, confirming the functional importance of CDC6 and their interaction with hsa_circ_000240 and associated ceRNA in CRC. In conclusion, this study highlights hsa_circ_000240's role as a ceRNA in CRC. It opens new avenues for further dissection of CDC6, ORC1, and underlying novel epigenetics and immunotherapy targets for CRC therapy.
Journal Article
Comparison of the effectiveness of lecture instruction and virtual reality-based serious gaming instruction on the medical students’ learning outcome about approach to coma
by
Niromand, Elham
,
Azizi, Seyyed Mohsen
,
Mansoory, Meysam Siyah
in
Approaches to teaching and learning
,
Clinical competence
,
Coma
2021
Background
New approaches to e-learning and the use of virtual reality technology and serious game in medical education are on the rise. Therefore, the purpose of this study was to compare the effectiveness of lecture method and virtual reality-based serious gaming (VRBSG) method on students learning outcomes about the approach to coma.
Methods
We adopted a randomized trial method for this study and selected 50 medical students dividing them into experimental and control groups. Students’ learning outcome was measured with a 10-item test. Serious game usability scale was used to evaluate the usability of the serious game. Descriptive and inferential statistics were used for data analysis by SPSS-22 software.
Results
Students’ familiarity with e-learning and VRBSG was low. The mean usability of a VRBSG was 126.78 ± 10.34 out of 150. The majority of students were eager to be instructed through VRBSG. The mean score of learning outcomes in the experimental group was significantly higher than the control group (t = − 2.457,
P
= 0.019).
Conclusion
Students’ learning outcomes in the VRBSG group in the test approach to coma were significantly better than the lecture group. The usability of the serious game instruction method was high. Taken together, instruction through VRBSG had an effective role in medical students’ learning.
Journal Article
Robust and data-efficient generalization of self-supervised machine learning for diagnostic imaging
by
Krogue, Justin
,
Natarajan, Vivek
,
Freyberg, Jan
in
692/700/139
,
692/700/1421
,
Biomedical and Life Sciences
2023
Machine-learning models for medical tasks can match or surpass the performance of clinical experts. However, in settings differing from those of the training dataset, the performance of a model can deteriorate substantially. Here we report a representation-learning strategy for machine-learning models applied to medical-imaging tasks that mitigates such ‘out of distribution’ performance problem and that improves model robustness and training efficiency. The strategy, which we named REMEDIS (for ‘Robust and Efficient Medical Imaging with Self-supervision’), combines large-scale supervised transfer learning on natural images and intermediate contrastive self-supervised learning on medical images and requires minimal task-specific customization. We show the utility of REMEDIS in a range of diagnostic-imaging tasks covering six imaging domains and 15 test datasets, and by simulating three realistic out-of-distribution scenarios. REMEDIS improved in-distribution diagnostic accuracies up to 11.5% with respect to strong supervised baseline models, and in out-of-distribution settings required only 1–33% of the data for retraining to match the performance of supervised models retrained using all available data. REMEDIS may accelerate the development lifecycle of machine-learning models for medical imaging.
A representation-learning strategy for machine-learning models applied to medical-imaging tasks improves model robustness and training efficiency and mitigates suboptimal out-of-distribution performance.
Journal Article
The biodiversity of Lactobacillus spp. from Iranian raw milk Motal cheese and antibacterial evaluation based on bacteriocin-encoding genes
by
Edalatian Dovom, Mohammad R.
,
Habibi Najafi, Mohammad B.
,
Azizi, Fahimeh
in
Ammonia
,
Antiinfectives and antibacterials
,
Antimicrobial activity
2017
Lactobacilli
, as the largest group of lactic acid bacteria, produce large amounts of antimicrobial metabolites such as organic acids, fatty acids, ammonia, hydrogen peroxide, diacetyl and bacteriocin, which inhibit the growth of pathogenic bacteria and increase shelf life of food. The aim of this study was to identify the
Lactobacillus
spp. isolated from Iranian raw milk Motal cheese and to detect the presence of bacteriocin genes in the isolated
Lactobacillus
strains exhibiting antimicrobial activity. For this purpose, 6 Motal cheese samples from Dasht-e-Moghan region, Iran, were subjected to microbial characterization. Nineteen
Lactobacillus
spp. were isolated and subsequently identified based on biochemical and molecular methods. According to the sequencing of isolates,
Lactobacillus
spp. consisted primarily of
Lactobacillus brevis
,
Lactobacillus plantarum
,
Lactobacillus casei
and
Lactobacillus buchneri
. The identified isolates were then evaluated for antimicrobial activity against
Escherichia coli
ATCC 25922,
Listeria innocua
ATCC 33090 and
Staphylococcus aureus
ATCC 25923. The results of PCR analysis using specific primers of genes encoding Bacteriocin, revealed the presence of Plantaricin A and Plantaricin EF in all
Lactobacillus plantarum
isolates and Brevicin 174A in 5 of
Lactobacillus brevis
isolates, whereas the gene encoding Pediocin PA-1 was not observed in any of examined isolates. It is therefore concluded that bacteriocinogenic isolates could be recommended as suitable candidates to be used as starter, adjunct-starter or antimicrobial agents for production of fermented and non-fermented products.
Journal Article
A multicenter hospital-based analysis of cystic Echinococcosis in Afghanistan: Filling a National data gap
by
Tuohetaerbaike, Bahetibieke
,
Omar, Abdulbari
,
Behrad, Mohammad Sayed
in
Adolescent
,
Adult
,
Afghanistan - epidemiology
2026
Cystic Echinococcosis (CE), a neglected zoonotic disease caused by Echinococcus granulosus, is highly endemic in Afghanistan due to livestock-dependent livelihoods, poor sanitation, limited healthcare access, and unregulated animal practices. Despite its substantial morbidity and economic burden, national surveillance and clinical data remain scarce.
This study aims to describe the clinical and demographic characteristics of surgically treated CE patients at five referral hospitals in Kabul, Afghanistan. The objective is to fill the gap of limited national-level data on CE, provide evidence for targeted clinical management, resource allocation, and inform the development of effective public health interventions to address this neglected disease.
This retrospective hospital based surgical case series analyzed 330 surgically treated CE patients admitted to five hospitals in Kabul (2021-2025). Data on demographics, geographic origin, affected organs, and clinical records were extracted from archived medical documents. Descriptive analysis prioritized epidemiological and clinical characterization.
Patients (6-78 years) originated from 31 provinces, with Kabul (107 cases), Faryab (35), and Balkh (24) as top sources. No significant gender predominance was observed (52.12% male, 47.87% female). Lungs were the most affected organ (86.66%), followed by the liver (11.51%); 81.31% of patients <20 years had pulmonary CE. Most cases (45.45%) were recorded in 2025, reflecting improved record retrieval.
CE persists as a major public health challenge in Afghanistan, driven by fragmented surveillance, inadequate prevention, and unequal treatment access. The high proportion of pulmonary CE and young patients highlights unique local epidemiological patterns. Addressing CE requires a multisectoral \"One Health\" approach integrating surveillance, community education, veterinary interventions, and expanded diagnostic/treatment capacity to break the poverty-disease cycle.
Journal Article
Molecular study of wound healing after using biosynthesized BNC/Fe3O4 nanocomposites assisted with a bioinformatics approach
by
Amin Boroumand Moghaddam
,
Navaderi, Mohammad
,
Moniri, Mona
in
Antibacterial Activity
,
Bacterial nanocellulose
,
Bioinformatics
2018
Background: Molecular investigation of wound healing has allowed better understanding about interaction of genes and pathways involved in healing progression. Objectives: The aim of this study was to prepare magnetic/bacterial nanocellulose (Fe3O4/BNC) nanocomposite films as ecofriendly wound dressing in order to evaluate their physical, cytotoxicity and antimicrobial properties. The molecular study was carried out to evaluate expression of genes involved in healing of wounds after treatment with BNC/Fe3O4 films. Study design, materials, and methods: Magnetic nanoparticles were biosynthesized by using Aloe vera extract in new isolated bacterial nanocellulose (BNC) RM1. The nanocomposites were characterized using X-ray diffraction, Fourier transform infrared, and field emission scanning electron microscopy. Moreover, swelling property and metal ions release profile of the nanocomposites were investigated. The ability of nanocomposites to promote wound healing of human dermal fibroblast cells in vitro was examined. Bioinformatics databases were used to identify genes with important healing effect. Key genes which interfered with healing were studied by quantitative real time PCR. Results: Spherical magnetic nanoparticles (15–30 nm) were formed and immobilized within the structure of BNC. The BNC/Fe3O4 was nontoxic (IC50>500 μg/mL) with excellent wound healing efficiency after 48 hours. The nanocomposites showed good antibacterial activity ranging from 6±0.2 to 13.40±0.10 mm against Staphylococcus aureus, Staphylococcus epidermidis and Pseudomonas aeruginosa. The effective genes for the wound healing process were TGF-B1, MMP2, MMP9, Wnt4, CTNNB1, hsa-miR-29b, and hsa-miR-29c with time dependent manner. BNC/Fe3O4 has an effect on microRNA by reducing its expression and therefore causing an increase in the gene expression of other genes, which consequently resulted in wound healing. Conclusion: This eco-friendly nanocomposite with excellent healing properties can be used as an effective wound dressing for treatment of cutaneous wounds.
Journal Article
In vitro molecular study of wound healing using biosynthesized bacteria nanocellulose/silver nanocomposite assisted by bioinformatics databases
by
Navaderi, Mohammad
,
Moniri, Mona
,
Mohamad, Rosfarizan
in
Ag-NPs
,
Anti-Bacterial Agents - pharmacology
,
Antibacterial agents
2018
In recent years, bacterial nanocellulose (BNC) based nanocomposites have been developed to promote healing property and antibacterial activity of BNC wound dressing. Molecular study can help to better understanding about interaction of genes and pathways involved in healing progression.
The aim of this study was to prepare bacterial nanocellulose/silver (BNC/Ag) nanocomposite films as ecofriendly wound dressing in order to assess their physical, cytotoxicity and antimicrobial properties. The in vitro molecular study was performed to evaluate expression of genes involved in healing of wounds after treatment with BNC/Ag biofilms.
Silver nanoparticles were formed by using
extract within new isolated bacterial nanocellulose (BNC) RM1. The nanocomposites were characterized using X-ray diffraction, Fourier transform infrared, and field emission scanning electron microscopy. Besides, swelling property and Ag release profile of the nanocomposites were studied. The ability of nanocomposites to promote wound healing of human dermal fibroblast cells in vitro was studied. Bioinformatics databases were used to identify genes with important healing effect. Key genes which interfered with healing were studied by quantitative real time PCR.
Spherical silver nanoparticles with particle size ranging from 20 to 50 nm were synthesized and impregnated within the structure of BNC. The resulting nanocomposites showed significant antibacterial activities with inhibition zones ranging from 7±0.25 to 16.24±0.09 mm against skin pathogenic bacteria. Moreover, it was compatible with human fibroblast cells (HDF) and could promote in vitro wound healing after 48h. Based on bioinformatics databases, the genes of
-
,
,
,
,
,
and
played important role in wound healing. The nanocomposites had an effect in expression of the genes in healing. Thus, the BNC/Ag nanocomposite can be used to heal wound in a short period and simple manner.
This eco-friendly nanocomposite with excellent antibacterial activities and healing property confirming its utility as potential wound dressings.
Journal Article
Pain and sleep after open-heart surgery-inhalation peppermint essence: double-blind randomized clinical trial
by
Pour‑Abbasi, Mohammad-Sadegh
,
Maghami, Mahla
,
Maghami, Mahboobeh
in
Alternative medicine
,
Aromatherapy
,
Chronic pain
2023
ObjectiveThe aim of this study was to determine the effect of inhaling peppermint essence on pain relief and sleep quality after open-heart surgery.MethodsIn a double-blind randomised clinical trial carried out in Iran in 2020, 64 cardiac patients were selected by convenience sampling and randomly allocated to aromatherapy (n=32) and placebo (n=32) groups. The aromatherapy and control groups received inhaled aromatherapy using peppermint essence and distilled water, respectively. Data gathering tools were the Numeric Pain Rating Scale and St Mary’s Hospital Sleep Questionnaire. Data were analysed using an independent t-test, χ2 test, Mann–Whitney U test and generalised estimating equation analysis.ResultsThe mean severity of pain in the aromatherapy and placebo groups was 3.22±0.88 and 4.56±0.90, respectively, which was a statistically significant difference (p=0.0001). The mean sleep scores after the intervention on day 1 were 20.10±4.90 and 25.76±6.36 in the aromatherapy and placebo groups, respectively, and 18.63±5.56 and 22.62±5.69, respectively, on day 2. The difference between the two groups was statistically significantly different after the intervention in terms of sleep quality (p<0.05).ConclusionAromatherapy attenuated pain and improved sleep quality after open-heart surgery. Peppermint essence aromatherapy is therefore recommended after surgery.
Journal Article