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"Banetta, Luca"
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Pair correlation function of charge-stabilized colloidal systems under sheared conditions
2020
The pair correlation function of charge stabilized colloidal particles under strongly sheared conditions is studied using the analytical intermediate asymptotics method recently developed in Banetta and Zaccone (Phys. Rev. E 99, 052606 (2019) to solve the steady-state Smoluchowski equation for medium to high values of the Péclet number; the analytical theory works for dilute conditions. A rich physical behaviour is unveiled for the pair correlation function of colloids interacting via the repulsive Yukawa (or Debye-Hückel) potential, in both the extensional and compressional sectors of the solid angle. In the compression sector, a peak near contact is due to the advecting action of the flow and decreases upon increasing the coupling strength parameter Γ of the Yukawa potential. Upon increasing the screening (Debye) length κ− 1, a secondary peak shows up, at a larger separation distance, slightly less than the Debye length. While this secondary peak grows, the primary peak near contact decreases. The secondary peak is attributed to the competition between the advecting (attractive-like) action of the flow in the compressions sector, and the repulsion due to the electrostatics. In the extensional sectors, a depletion layer (where the pair-correlation function is identically zero) near contact is predicted, the width of which increases upon increasing either Γ or κ− 1.
Journal Article
Correction to: Pair correlation function of charge-stabilized colloidal systems under sheared conditions
2020
The author noticed that the published paper contained error. Unfortunately, the published version does not have the author’s approval since there are problems with equations that are completely unreadable.
Journal Article
Direct observation of heterogeneous formation of amyloid spherulites in real-time by super-resolution microscopy
2022
Protein misfolding in the form of fibrils or spherulites is involved in a spectrum of pathological abnormalities. Our current understanding of protein aggregation mechanisms has primarily relied on the use of spectrometric methods to determine the average growth rates and diffraction-limited microscopes with low temporal resolution to observe the large-scale morphologies of intermediates. We developed a REal-time kinetics via binding and Photobleaching LOcalization Microscopy (REPLOM) super-resolution method to directly observe and quantify the existence and abundance of diverse aggregate morphologies of human insulin, below the diffraction limit and extract their heterogeneous growth kinetics. Our results revealed that even the growth of microscopically identical aggregates, e.g., amyloid spherulites, may follow distinct pathways. Specifically, spherulites do not exclusively grow isotropically but, surprisingly, may also grow anisotropically, following similar pathways as reported for minerals and polymers. Combining our technique with machine learning approaches, we associated growth rates to specific morphological transitions and provided energy barriers and the energy landscape at the level of single aggregate morphology. Our unifying framework for the detection and analysis of spherulite growth can be extended to other self-assembled systems characterized by a high degree of heterogeneity, disentangling the broad spectrum of diverse morphologies at the single-molecule level.
Real-time super-resolution microscopy analysis reveals the growth kinetics, morphology, and abundance of human insulin amyloid spherulites with different growth pathways.
Journal Article
Pair correlation function of charge-stabilized colloidal systems under sheared conditions
2021
The pair correlation function of charge stabilized colloidal particles under strongly sheared conditions is studied using the analytical intermediate asymptotics method recently developed in [L. Banetta and A. Zaccone, Phys. Rev. E 99, 052606 (2019)] to solve the steady-state Smoluchowski equation for medium to high values of the Péclet number; the analytical theory works for dilute conditions. A rich physical behaviour is unveiled for the pair correlation function of colloids interacting via the repulsive Yukawa (or Debye-H\"uckel) potential, in both the extensional and compressional sectors of the solid angle. In the compression sector, a peak near contact is due to the advecting action of the flow and decreases upon increasing the coupling strength parameter \\(\\Gamma\\) of the Yukawa potential. Upon increasing the screening (Debye) length \\(\\kappa^{-1}\\), a secondary peak shows up, at a larger separation distance, slightly less than the Debye length. While this secondary peak grows, the primary peak near contact decreases. The secondary peak is attributed to the competition between the advecting (attractive-like) action of the flow in the compressions sector, and the repulsion due to the electrostatics. In the extensional sectors, a depletion layer (where the pair-correlation function is identically zero) near contact is predicted, the width of which increases upon increasing either \\(\\Gamma\\) or \\(\\kappa^{-1}\\).
Solution to the two-body Smoluchowski equation with shear flow for charge-stabilized colloids at low to moderate Péclet numbers
by
Riva, Simone
,
Zaccone, Alessio
,
Banetta, Luca
in
Advection-diffusion equation
,
Colloids
,
Compressing
2022
We developed an analytical theoretical method to determine the microscopical structure of weakly to moderately sheared colloidal suspensions in dilute conditions. The microstructure is described by the static structure factor, obtained by solving the stationary two-body Smoluchowski advection-diffusion equation. The singularly perturbed PDE problem is solved by performing an angular averaging over the extensional and compressing sectors and by the rigorous application of boundary-layer theory (intermediate asymptotics). This allows us to expand the solution to a higher order in Péclet with respect to previous methods. The scheme is independent of the type of interaction potential. We apply it to the example of charge-stabilized colloidal particles interacting via the repulsive Yukawa potential and study the distortion of the structure factor. It is predicted that the distortion is larger at small wavevectors \\(k\\) and its dependence on \\(Pe\\) is a simple power law. At increasing \\(Pe\\), the main peak of the structure factor displays a broadening and shift towards lower \\(k\\) in the extensional sectors, which indicates shear-induced spreading out of particle correlations and neighbor particles locally being dragged away from the reference one. In the compressing sectors, instead, a narrowing and shift towards high \\(k\\) is predicted, reflecting shear-induced ordering near contact and concomitant depletion in the medium-range. An overall narrowing of the peak is also predicted for the structure factor averaged over the whole solid angle. Calculations are also performed for hard spheres, showing good overall agreement with experimental data. It is also shown that the shear-induced structure factor distortion is orders of magnitude larger for the Yukawa repulsion than for the hard spheres.
Microscopic theory for the pair correlation function of liquidlike colloidal suspensions under shear flow
by
Zaccone, Alessio
,
Leone, Francesco
,
Anzivino, Carmine
in
Colloids
,
Correlation
,
Diffusion layers
2022
We present a theoretical framework to investigate the microscopic structure of concentrated hard-sphere colloidal suspensions under strong shear flows by fully taking into account the boundary-layer structure of convective diffusion. We solve the pair Smoluchowski equation with shear separately in the compressing and extensional sectors of the solid angle, by means of matched asymptotics. A proper, albeit approximate, treatment of the hydrodynamic interactions in the different sectors allows us to construct a potential of mean force containing the effect of the flow field on pair correlations. We insert the obtained pair potential in the Percus-Yevick relation and use the latter as a closure to solve the Ornstein-Zernike integral equation. For a wide range of either the packing fraction \\(\\eta\\) and the Péclet (\\(\\textrm{Pe}\\)) number, we compute the pair correlation function and extract scaling laws for its value at contact. For all the considered value of \\(\\textrm{Pe},\\) we observe a very good agreement between theoretical findings and numerical results from literature, up to rather large values of \\(\\eta.\\) The theory predicts a consistent enhancement of the structure factor \\( S(k)\\) at \\(k \\to 0,\\) upon increasing the \\(\\textrm{Pe}\\) number. We argue this behaviour may signal the onset of a phase transition from the isotropic phase to a non-uniform one, induced by the external shear flow.
Predictive model of polymer reaction kinetics and coagulation behavior in seeded emulsion co- and ter-polymerizations
by
Hoogard, George
,
Zaccone, Alessio
,
Simpson, Gareth
in
Coagulation
,
Copolymerization
,
Emulsion polymerization
2020
A mathematical model to describe the emulsion polymerization kinetics of co- and ter-polymerizations is developed. The model is based on the classical Smith-Ewart (SE) equations, within the pseudo-homopolymerization approach, with state-of-the-art models for radical entry and desorption. For co- and ter-polymerizations there are unknown parameters in the model which are related to monomer-specific gel-effect coefficients, that are needed to compute the bimolecular termination reaction rates. The unknown parameters are determined through extensive calibration of the model on literature data for homo- and co-polymerizations of \\textit{n}-butyl acrylate (n-BA) and methyl methacrylate (MMA). The so-obtained predictive model is then applied to the modelling of the ter-polymerization of n-BA and MMA with 2-hydroxyethyl methacrylate (2-HEMA) with sodium persulphate (SPR) as initiator: predictions for the time-evolution of particle size and conversion are in excellent agreement with experimental measurements using Dynamic Light Scattering (DLS) and Gas Chromatography (GC), upon tuning the gel-effect coefficient related to 2-HEMA. The developed model is used to quantify the surfactant surface coverage of the particles as well as the total concentration of counterions in the system throughout the entire polymerization process. This key information provides a way to rationalize and control the coagulation behavior during the whole polymerization process.
Direct Observation of Heterogeneous Formation of Amyloid Spherulites in Real-time by Super-resolution Microscopy
2022
Protein misfolding in the form of fibrils or spherulites is involved in a spectrum of pathological abnormalities. Our current understanding of protein aggregation mechanisms has primarily relied on the use of spectrometric methods to determine the average growth rates and diffraction-limited microscopes with a low temporal resolution to observe the large-scale morphologies of intermediates. We developed a REal-time kinetics via binding and Photobleaching LOcalisation Microscopy (REPLOM) super-resolution method to directly observe and quantify the existence and abundance of diverse aggregate morphologies of human insulin, below the diffraction limit and extract their heterogeneous growth kinetics. Our results revealed that even the growth of microscopically identical aggregates, e.g. amyloid spherulites, may follow distinct pathways. Specifically, spherulites do not exclusively grow isotropically but, surprisingly, may also grow anisotropically, following similar pathways as reported for minerals and polymers. Combining our technique with machine learning approaches, we associated growth rates to specific morphological transitions and provided energy barriers and the energy landscape at the level of single aggregate morphology. Our unifying framework for the detection and analysis of spherulite growth can be extended to other self-assembled systems characterized by a high degree of heterogeneity, disentangling the broad spectrum of diverse morphologies at the single-molecule level.
Web Resource
Direct Observation of Heterogeneous Formation of Amyloid Spherulites in Real-time by Super-resolution Microscopy
2022
The misfolding of proteins and their aggregation in the form of fibrils or amyloid-like spherulites are involved in a spectrum of pathological abnormalities. Our current understanding of protein amyloid aggregation mechanisms has primarily relied on the use of spectrometric methods to determine the average growth rates and diffraction limited microscopes with low temporal resolution to observe the large-scale morphologies of intermediates. We developed a REal-time kinetics via binding and Photobleaching LOcalisation Microscopy (REPLOM) super-resolution method to directly observe and quantify the existence and abundance of diverse aggregate morphologies below the diffraction limit and extract their heterogeneous growth kinetics. Our results revealed that even the growth of a microscopically identical aggregates, e.g. amyloid spherulites, may follow distinct pathways. Specifically, spherulites do not exclusively grow isotropically but, surprisingly, may also grow anisotropically, following similar pathways as reported for minerals and polymers. Combining our technique with machine learning approaches, we associated growth rates to specific morphological transitions and provided energy barriers and the energy landscape at the level of single aggregate morphology. Our unifying framework for the detection and analysis of spherulite growth can be extended to other self-assembled systems characterized by a high degree of heterogeneity, disentangling the broad spectrum of diverse morphologies at the single-molecule level.
Direct Observation of Anisotropy-Driven Formation of Amyloid Protein Core-Shell Structures in Real-time by Super-resolution Microscopy
2021
Abstract Proteins misfolding and aggregation in the form of fibrils or amyloid containing spherulite-like structures, are involved in a spectrum of degenerative diseases. Current understanding of protein aggregation mechanism primarily relies on conventional spectrometric methods reporting the average growth rates and microscopy readouts of final structures, consequently masking the morphological and growth heterogeneity of the aggregates. Here we developed REal-time kinetics via binding and Photobleaching LOcalization Microscopy (REPLOM) super resolution method to observe directly and quantify the existence and abundance of diverse aggregation morphologies as well as the heterogeneous growth kinetics of each of them. Our results surprisingly revealed insulin aggregation is not exclusively isotropic, but it may also occur anisotropically. Combined with Machine learning we associated growth rates to specific morphological transitions and provided energy barriers and the energy landscape for each aggregation morphology. Our unifying framework of detection and analysis of spherulite growth can be extended to other protein systems and reveal their aggregation processes at single molecule level. Competing Interest Statement The authors have declared no competing interest.