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result(s) for
"Baowei Xie"
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Pneumonia detection based on RSNA dataset and anchor-free deep learning detector
2024
Pneumonia is a highly lethal disease, and research on its treatment and early screening tools has received extensive attention from researchers. Due to the maturity and cost reduction of chest X-ray technology, and with the development of artificial intelligence technology, pneumonia identification based on deep learning and chest X-ray has attracted attention from all over the world. Although the feature extraction capability of deep learning is strong, existing deep learning object detection frameworks are based on pre-defined anchors, which require a lot of tuning and experience to guarantee their excellent results in the face of new applications or data. To avoid the influence of anchor settings in pneumonia detection, this paper proposes an anchor-free object detection framework and RSNA dataset based on pneumonia detection. First, a data enhancement scheme is used to preprocess the chest X-ray images; second, an anchor-free object detection framework is used for pneumonia detection, which contains a feature pyramid, two-branch detection head, and focal loss. The average precision of 51.5 obtained by Intersection over Union (IoU) calculation shows that the pneumonia detection results obtained in this paper can surpass the existing classical object detection framework, providing an idea for future research and exploration.
Journal Article
Cathode Properties of Na3FePO4CO3 Prepared by the Mechanical Ball Milling Method for Na-ion Batteries
2020
The carbonophosphate Na
3
FePO
4
CO
3
was synthesized by the mechanical ball milling method for the first time. The composition of the obtained sample with a higher amount of Fe
2+
was Na
2.66
Fe
2+
0.66
Fe
3+
0.34
PO
4
CO
3
as confirmed by Mössbauer analysis, owing to the good airtight properties of this method. The obtained samples in an organic electrolyte delivered an initial discharge capacity of 124 mAh/g at room temperature, and a larger discharge capacity of 159 mAh/g (1.66 Na
+
/mole) at 60 °C. With 17 m NaClO
4
aqueous electrolyte, a discharge capacity of 161 mAh/g (1.69 Na
+
/mole) was delivered because of the high ionic conductivity of the concentrated aqueous electrolyte. During the charge-discharge process, the formation of Fe
4+
after charging up to 4.5 V and the return of Fe
2+
after discharging down to 1.5 V were detected by
ex-situ
X-ray absorption near edge structure (XANES) analysis.
Journal Article
Cathode Properties of Na3MnPO4CO3 Prepared by the Mechanical Ball Milling Method for Na-Ion Batteries
by
Ayuko Kitajou
,
Kosuke Nakamoto
,
Liwei Zhao
in
aqueous electrolyte
,
carbonophosphate
,
Crystal structure
2019
A novel carbonophosphate, Na3MnPO4CO3, was synthesized as a cathode material using a mechanical ball milling method with starting materials of MnCO3 and Na3PO4 without washing or drying. Duo to the formation of nano-size particles and good dispersion of the obtained Na3MnPO4CO3, the initial discharge capacity in an organic electrolyte of 1 M NaPF6/ethylene carbonate (EC): dimethyl carbonate (DMC) (1:1 v/v) was 135 mAh∙g−1 and 116 mAh∙g−1 at 1/30 C and 1/10 C, respectively. We also investigated the cathode properties of Na3MnPO4CO3 in an aqueous electrolyte of 17 m NaClO4. This is the first investigation of the electrochemical performance of Na3MnPO4CO3 with aqueous electrolyte. Na3MnPO4CO3 achieved a discharge capacity as large as 134 mAh g−1 even at a high current density of 2 mA cm−2 (0.5 C), because of the high ionic conductivity of the aqueous electrolyte of 17 m NaClO4.
Journal Article
Cathode Properties of Na 3 FePO 4 CO 3 Prepared by the Mechanical Ball Milling Method for Na-ion Batteries
2020
The carbonophosphate Na
FePO
CO
was synthesized by the mechanical ball milling method for the first time. The composition of the obtained sample with a higher amount of Fe
was Na
Fe
Fe
PO
CO
as confirmed by Mössbauer analysis, owing to the good airtight properties of this method. The obtained samples in an organic electrolyte delivered an initial discharge capacity of 124 mAh/g at room temperature, and a larger discharge capacity of 159 mAh/g (1.66 Na
/mole) at 60 °C. With 17 m NaClO
aqueous electrolyte, a discharge capacity of 161 mAh/g (1.69 Na
/mole) was delivered because of the high ionic conductivity of the concentrated aqueous electrolyte. During the charge-discharge process, the formation of Fe
after charging up to 4.5 V and the return of Fe
after discharging down to 1.5 V were detected by ex-situ X-ray absorption near edge structure (XANES) analysis.
Journal Article
Recent progress of radionuclides separation by porous materials
2024
The separation of radionuclides is critical for the sustainable development of nuclear energy. It is urgent to design and prepare functionalized materials for efficient radionuclides separation. Porous materials are considered excellent candidates for the separation of radionuclides under complex conditions due to their high specific surface areas, tunable pore structures and controllable functionalities. In this review, we summarized the design, preparation and functionalization of porous materials and their application for separation of radionuclides in the past five years, discussed the separation performance and analyzed the structure-activity relationship between various radionuclides and porous materials, and systematically clarified their characterization and mechanism of different type porous materials. We also introduced the detection, irradiation and chemical toxicity of different reflective radionuclides.
Journal Article
Renal denervation attenuates cardiac inflammatory responses via the afferent renal-splenic nerve axis after myocardial ischemic injury
by
Zhang, Youming
,
Xie, Jiaxi
,
Li, Xiaorong
in
Biomedical and Life Sciences
,
Biomedicine
,
Blood pressure
2025
Background
Inflammation and the nervous system play pivotal roles in cardiac remodeling after myocardial infarction (MI). Recent study showed renal denervation (RDN) could reduce cardiac inflammation, however, the specific mechanism remains unclear.
Methods
We firstly reanalyzed the previous heart single-cell RNA sequencing (scRNA-seq) and spatial transcriptomics to examine the alterations in immune cell subsets following MI. Subsequently, we carried out diverse denervation procedures to explore the relationship between the nerve axis and the inflammatory response. Finally, we performed bulk RNA-seq and neurotransmitter analysis to explore the molecular mechanisms implicated in the migration of splenic myeloid cells after MI.
Results
Myeloid cells manifested the most substantial changes following MI and accumulated in the vicinity of the infarct area. The afferent renal nerve - splenic nerve axis regulates the migratory capacities of splenic myeloid cells after MI. RDN decreased the norepinephrine (NE) levels in the spleen after MI and attenuated the expression of ITGA9 on splenic myeloid cells, which impaired their interaction with VCAM-1 on cardiac endothelial cells and thereby reduced their migration to the heart.
Conclusions
Our study highlights the crucial role of the afferent renal nerve-splenic nerve axis in regulating cardiac inflammation and provides a interventional target for improving cardiac function after myocardial ischemic injury.
Journal Article
Chromosome-scale genome assembly of Apocynum pictum, a drought-tolerant medicinal plant from the Tarim Basin
2024
Apocynum pictum Schrenk is a semishrub of the Apocynaceae family with a wide distribution throughout the Tarim Basin that holds significant ecological, medicinal, and economic values. Here, we report the assembly of its chromosome-level reference genome using Nanopore long-read, Illumina HiSeq paired-end, and high-throughput chromosome conformation capture sequencing. The final assembly is 225.32 Mb in length with a scaffold N50 of 19.64 Mb. It contains 23,147 protein-coding genes across 11 chromosomes, 21,148 of which (91.36%) have protein functional annotations. Comparative genomics analysis revealed that A. pictum diverged from the closely related species Apocynum venetum approximately 2.2 million years ago and has not undergone additional polyploidizations after the core eudicot WGT-γ event. Karyotype evolution analysis was used to characterize interchromosomal rearrangements in representative Apocynaceae species and revealed that several A. pictum chromosomes were derived entirely from single chromosomes of the ancestral eudicot karyotype. Finally, we identified 50 members of the well-known stress-responsive WRKY transcription factor family and used transcriptomic data to document changes in their expression at 2 stages of drought stress, identifying a number of promising candidate genes. Overall, this study provides high-quality genomic resources for evolutionary and comparative genomics of the Apocynaceae, as well as initial molecular insights into the drought adaptation of this valuable desert plant.
Journal Article
Hyperactivation of ATF4/TGF-β1 signaling contributes to the progressive cardiac fibrosis in Arrhythmogenic cardiomyopathy caused by DSG2 Variant
by
Zhang, Youming
,
Xie, Jiaxi
,
Yang, Bing
in
Activating transcription factor 4
,
Activating Transcription Factor 4 - genetics
,
Activating Transcription Factor 4 - metabolism
2024
Background
Arrhythmogenic cardiomyopathy (ACM) is an inherited cardiomyopathy characterized with progressive cardiac fibrosis and heart failure. However, the exact mechanism driving the progression of cardiac fibrosis and heart failure in ACM remains elusive. This study aims to investigate the underlying mechanisms of progressive cardiac fibrosis in ACM caused by newly identified
Desmoglein-2 (DSG2)
variation.
Methods
We identified homozygous
DSG2
F531C
variant in a family with 8 ACM patients using whole-exome sequencing and generated
Dsg2
F536C
knock-in mice. Neonatal and adult mouse ventricular myocytes isolated from
Dsg2
F536C
knock-in mice were used. We performed functional, transcriptomic and mass spectrometry analyses to evaluate the mechanisms of ACM caused by
DSG2
F531C
variant.
Results
All eight patients with ACM were homozygous for
DSG2
F531C
variant.
Dsg2
F536C/F536C
mice displayed cardiac enlargement, dysfunction, and progressive cardiac fibrosis in both ventricles. Mechanistic investigations revealed that the variant DSG2-F536C protein underwent misfolding, leading to its recognition by BiP within the endoplasmic reticulum, which triggered endoplasmic reticulum stress, activated the PERK-ATF4 signaling pathway and increased ATF4 levels in cardiomyocytes. Increased ATF4 facilitated the expression of TGF-β1 in cardiomyocytes, thereby activating cardiac fibroblasts through paracrine signaling and ultimately promoting cardiac fibrosis in
Dsg2
F536C/F536C
mice. Notably, inhibition of the PERK-ATF4 signaling attenuated progressive cardiac fibrosis and cardiac systolic dysfunction in
Dsg2
F536C/F536C
mice.
Conclusions
Hyperactivation of the ATF4/TGF-β1 signaling in cardiomyocytes emerges as a novel mechanism underlying progressive cardiac fibrosis in ACM. Targeting the ATF4/TGF-β1 signaling may be a novel therapeutic target for managing ACM.
Journal Article
The mitochondrial genome of pin-tailed snipe Gallinago stenura, and its implications for the phylogeny of Charadriiformes
2017
The Charadriiformes, among the most diverse orders of bird, is a good source to research on evolution. The mitochondrial genome sequencing database has rapidly increased in recent years, while Charadriiformes mitogenome has not been well studied. In this research, we determined the complete mitogenome sequence of Gallinago stenura, and comparatively analysed 20 mitogenomes of Charadriiformes. The mitogenomes display moderate size variation, and most of variation due to mutations in the control region. In 13 protein-coding genes, we found: 1. The GC skews are always negative, while the negative AT skews are found in 5 genes, 2. The average uncorrected pairwise distances reveal heterogeneity of evolutionary rate for each gene, 3. The ATG and TAA, respectively, are observed the most commonly start and stop codon. The highest dN/dS is detected for ATP8 (0.16) among Charadriiformes, while the lowest for COI (0.01), indicating that 13 protein-coding genes are evolving under the purifying selection. Predicted secondary structures of tRNAs indicate that the sequences and structures of anticodon, amino acceptor, and TψC arms are highly conserved, and most nucleotide variation is restricted to dihydrouridine arms with obvious indel polymorphisms. A total of 15 conserved sequence boxes were recognized in the control regions, and the 4 bp (5'-AAAC-3') and 7 bp (5'- AAACAAC -3') repeat sequences occurred frequently. Phylogenomic analysis based on the nearly complete mitochondrial genomes strongly supported the monophyly of the order, and the suborder Charadrii is at the basal of Charadriiformes. Moreover, our results well resolved the complexity family-level relationships and clearly depicted the evolutionary processes of Charadriiformes, based on 12 mitochondrial protein-coding genes from 18 families. This study improves our understanding of mitogenomic structure and evolution, which can provide further insights into our understanding of phylogeny and taxonomy in Charadriiformes.
Journal Article
The significance of heart rate variability in patients with frequent premature ventricular complex originating from the ventricular outflow tract
by
Li, Xiaorong
,
Yang, Bing
,
Tao, Aibin
in
Ablation
,
autonomic nervous system
,
Cardiac arrhythmia
2024
Background As an indicator of cardiac autonomic nervous activity, heart rate variability (HRV) is closely linked to premature ventricular complexes (PVCs). However, its role in patients with frequent PVCs originating from the ventricular outflow tract remains unclear. Hypothesis Here, we hypothesize that there may be alterations in HRV among patients with frequent PVCs originating from the ventricular outflow tract, which could play significant roles in the management of such patients. Methods A retrospective study was conducted, including 106 patients with frequent outflow tract PVCs and 106 healthy participants as controls. HRV was assessed based on the 24‐hour Holter recording. The originating foci of PVCs were identified during radiofrequency catheter ablation. Results Patients with frequent outflow tract PVCs exhibited decreased levels of high frequency (HF), standard deviation of all NN intervals, and standard deviation of the average NN intervals, but increased ratios of low frequency to HF (LF/HF ratio), even after propensity score‐matched analysis. Further investigation revealed that patients with PVCs originating from right ventricular outflow tract (RVOT) had much higher LF/HF ratios. Multivariate logistic regression analysis demonstrated that the LF/HF ratio was independently associated with PVCs originating from RVOT. Receiver operating characteristics curve indicated that the LF/HF ratio effectively determined the origin of PVCs (the area under the curve = 0.75, p < .001). Conclusions Patients with frequent outflow tract PVCs exhibited impaired HRV. Additionally, the LF/HF ratio played a significant role in determining the origin of outflow tract PVCs. A total of 106 frequent outflow tract premature ventricular complexes (OT‐PVCs) patients undergoing radiofrequency catheter ablation and 106 healthy participants were included in the study to examine the significance of heart rate variability (HRV) in patients with frequent OT‐PVCs. Patients with OT‐PVCs showed impaired HRV, while those with RVOT‐PVCs exhibited higher low frequency to high frequency ratios compared to patients with LVOT‐PVCs.
Journal Article