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"Barbieri, M."
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Dissecting the role of H3K27 acetylation and methylation in PRC2 mediated control of cellular identity
2019
The Polycomb repressive complexes PRC1 and PRC2 act non-redundantly at target genes to maintain transcriptional programs and ensure cellular identity. PRC2 methylates lysine 27 on histone H3 (H3K27me), while PRC1 mono-ubiquitinates histone H2A at lysine 119 (H2Aub1). Here we present engineered mouse embryonic stem cells (ESCs) targeting the PRC2 subunits EZH1 and EZH2 to discriminate between contributions of distinct H3K27 methylation states and the presence of PRC2/1 at chromatin. We generate catalytically inactive EZH2 mutant ESCs, demonstrating that H3K27 methylation, but not recruitment to the chromatin, is essential for proper ESC differentiation. We further show that EZH1 activity is sufficient to maintain repression of Polycomb targets by depositing H3K27me2/3 and preserving PRC1 recruitment. This occurs in the presence of altered H3K27me1 deposition at actively transcribed genes and by a diffused hyperacetylation of chromatin that compromises ESC developmental potential. Overall, this work provides insights for the contribution of diffuse chromatin invasion by acetyltransferases in PRC2-dependent loss of developmental control.
Polycomb repressive complexes PRC1 and PRC2 act non-redundantly at target genes to regulate transcription. Here the authors present engineered mouse ESCs targeting the PRC2 subunits EZH1 and EZH2 to discriminate between contributions of distinct H3K27 methylation states and the presence of PRC2/1 at chromatin, and provide evidence for the role of H3K27 acetylation in PRC2-mediated functions.
Journal Article
Ticks and rickettsial infection in the wildlife of two regions of the Brazilian Amazon
by
Labruna, Marcelo B
,
Marcili, Arlei
,
Barbieri, Amália R. M
in
Amazonia
,
Amblyomma cajennense
,
Animal Ecology
2015
During 2009–2012, wild animals and their ticks were sampled in two areas within the Amazon biome of Brazil, in the states of Mato Grosso and Pará. Animal tissues, blood, and ticks were molecularly tested for Rickettsia and Coxiella DNA. A total of 182 wild animals were sampled, comprising 28 mammalian, five avian, and three reptilian species. Animal tissues or blood were all negative for Rickettsia or Coxiella DNA. A total of 454 ticks (22 larvae, 226 nymphs, 127 males, 79 females) were collected from 52 (28.6 %) animals, and identified into 15 species: Amblyomma cajennense, A. naponense, A. humerale, A. nodosum, A. goeldii, A. oblongoguttatum, A. longirostre, A. calcaratum, A. coelebs, A. pacae, A. geayii, A. rotundatum, A. auricularium, A. ovale, and Haemaphysalis juxtakochi. While no Coxiella DNA was identified in ticks, six Rickettsia species were detected in the ticks. “Candidatus Rickettsia amblyommii” was the most common agent, detected in four tick species, A. cajennense, A. auricularium, A. longirostre, and A. humerale. The second most common agent, R. bellii, was detected in A. humerale and A. naponense. Rickettsia rhipicephali was detected in H. juxtakochi, and R. felis in A. humerale. Two possible new Rickettsia species were detected in A. naponense ticks, namely, a novel spotted fever group agent close-related to R. africae in Pará, and a novel Canadensis group agent in Mato Grosso. Results of the present study expand our knowledge on the tick fauna, and on the yet infantile knowledge of tick-borne rickettsiae in the Amazon biome.
Journal Article
Violation of the Leggett-Garg inequality with weak measurements of photons
by
Goggin, M. E.
,
Almeida, M. P.
,
Barbieri, M.
in
Algorithms
,
Atoms & subatomic particles
,
Coincidence
2011
By weakly measuring the polarization of a photon between two strong polarization measurements, we experimentally investigate the correlation between the appearance of anomalous values in quantum weak measurements and the violation of realism and nonintrusiveness of measurements. A quantitative formulation of the latter concept is expressed in terms of a Leggett-Garg inequality for the outcomes of subsequent measurements of an individual quantum system. We experimentally violate the Leggett-Garg inequality for several measurement strengths. Furthermore, we experimentally demonstrate that there is a one-to-one correlation between achieving strange weak values and violating the Leggett-Garg inequality.
Journal Article
Geographical distribution of Amblyomma cajennense (sensu lato) ticks (Parasitiformes: Ixodidae) in Brazil, with description of the nymph of A. cajennense (sensu stricto)
by
Guilloux, Aline G. A
,
Labruna, Marcelo B
,
Horta, Mauricio C
in
adults
,
Amblyomma cajennense
,
Animals
2016
Until recently, Amblyomma cajennense (Fabricius, 1787) was considered to represent a single tick species in the New World. Recent studies have split this taxon into six species. While the A. cajennense species complex or A. cajennense (sensu lato) (s.l.) is currently represented by two species in Brazil, A. cajennense (sensu stricto) (s.s.) and Amblyomma sculptum Berlese, 1888, their geographical distribution is poorly known. The distribution of the A. cajennense (s.l.) in Brazil was determined by morphological examination of all lots of A. cajennense (s.l.) in two large tick collections of Brazil, and by collecting new material during three field expeditions in the possible transition areas between the distribution ranges of A. cajennense (s.s.) and A. sculptum. Phylogenetic analysis inferred from the ITS2 rRNA gene was used to validate morphological results. Morphological description of the nymphal stage of A. cajennense (s.s.) is provided based on laboratory-reared specimens. From the tick collections, a total 12,512 adult ticks were examined and identified as 312 A. cajennense (s.s.), 6,252 A. sculptum and 5,948 A. cajennense (s.l.). A total of 1,746 ticks from 77 localities were collected during field expeditions, and were identified as 249 A. cajennense (s.s.), 443 A. sculptum, and 1,054 A. cajennense (s.l.) [these A. cajennense (s.l.) ticks were considered to be males of either A. cajennense (s.s.) or A. sculptum]. At least 23 localities contained the presence of both A. cajennense (s.s.) and A. sculptum in sympatry. DNA sequences of the ITS2 gene of 50 ticks from 30 localities confirmed the results of the morphological analyses. The nymph of A. cajennense (s.s.) is morphologically very similar to A. sculptum. Our results confirmed that A. cajennense (s.l.) is currently represented in Brazil by only two species, A. cajennense (s.s.) and A. sculptum. While these species have distinct distribution areas in the country, they are found in sympatry in some transition areas. The current distribution of A. cajennense (s.l.) has important implications to public health, since in Brazil A. sculptum is the most important vector of the bacterium Rickettsia rickettsii, the etiological agent of Brazilian spotted fever.
Journal Article
Limpopo National Park (Mozambico): groundwater assessment as a tool for a sustainable management of the area
2023
This paper deals with updated results coming from hydrogeological studies carried on the framework of the SECOSUD Phase II, called “Conservation and equitable use of biological diversity in the SADC region (Southern African Development Community), a project supported by the Italian Ministry of Foreign Affairs in the SADC, whose focus area includes South Africa Development Countries. The main goal of the SECOSUD Phase II Project is the definition and implementation of scenarios for sustainable development, aimed at an equitable conservation of biodiversity resources and, as a consequence of this target, the hydrogeological characterization, with the groundwater recharge assessment, of this area and its buffer zone. Limpopo National Park is one of the jewels in the crown of Mozambique’s protected areas. As a matter of fact, sustaining the conservation of biodiversity, due to its complexity and multiple drivers, which stress it, is on first a matter of water environment assessment, as most ecosystems are highly dependent on the hydrological cycle and groundwater availability. After gathering regional and local geological data, which let us set up a detailed geological map of the area under study, pointing out the main outcropping geological units, with their main hydrogeological properties, the methodological approach adopted has been to assess the potential infiltration, applying the Inverse Hydrogeological Budget Technique, performed for the focus area. Because of the lack of meteorological data referred to Limpopo National Park, it has been applied a spatial distribution of precipitation measurements, collected in many gauge stations, located in the Kruger National Park during the last 54 years, which represent an interesting rainfall historical series. The target of the study has been to assess a trend of meteorological data with the aim of understanding how precipitations could affect groundwater recharge, and their influence on groundwater availability. The estimation of groundwater recharge is the tool for suggesting better water management in the area, aimed to preserve as much biodiversity as people living in the buffer zone.
Journal Article
Interfacing GHz-bandwidth heralded single photons with a warm vapour Raman memory
2015
Broadband quantum memories, used as temporal multiplexers, are a key component in photonic quantum information processing, as they make repeat-until-success strategies scalable. We demonstrate a prototype system, operating on-demand, by interfacing a warm vapour, high time-bandwidth-product Raman memory with a travelling wave spontaneous parametric down-conversion source. We store single photons and observe a clear influence of the input photon statistics on the retrieved light, which we find currently to be limited by noise. We develop a theoretical model that identifies four-wave mixing as the sole important noise source and point towards practical solutions for noise-free operation.
Journal Article
Towards quantum chemistry on a quantum computer
by
Whitfield, J. D.
,
Gillett, G. G.
,
Mohseni, M.
in
639/638/440
,
639/638/563/758
,
639/766/483/1139
2010
Exact first-principles calculations of molecular properties are currently intractable because their computational cost grows exponentially with both the number of atoms and basis set size. A solution is to move to a radically different model of computing by building a quantum computer, which is a device that uses quantum systems themselves to store and process data. Here we report the application of the latest photonic quantum computer technology to calculate properties of the smallest molecular system: the hydrogen molecule in a minimal basis. We calculate the complete energy spectrum to 20 bits of precision and discuss how the technique can be expanded to solve large-scale chemical problems that lie beyond the reach of modern supercomputers. These results represent an early practical step toward a powerful tool with a broad range of quantum-chemical applications.
Precise calculations of molecular properties from first-principles set great problems for large systems because their conventional computational cost increases exponentially with size. Quantum computing offers an alternative, and here the H
2
potential energy curve is calculated using the latest photonic quantum computer technology.
Journal Article
CRISPR screen for protein inclusion formation uncovers a role for SRRD in the regulation of intermediate filament dynamics and aggresome assembly
by
Chantarawong, Sapanna
,
Greenwald, Phoebe
,
Spruce, Lynn
in
Aggregates
,
Aggresomes
,
Amyotrophic lateral sclerosis
2024
The presence of large protein inclusions is a hallmark of neurodegeneration, and yet the precise molecular factors that contribute to their formation remain poorly understood. Screens using aggregation-prone proteins have commonly relied on downstream toxicity as a readout rather than the direct formation of aggregates. Here, we combined a genome-wide CRISPR knockout screen with Pulse Shape Analysis, a FACS-based method for inclusion detection, to identify direct modifiers of TDP-43 aggregation in human cells. Our screen revealed both canonical and novel proteostasis genes, and unearthed SRRD, a poorly characterized protein, as a top regulator of protein inclusion formation. APEX biotin labeling reveals that SRRD resides in proximity to proteins that are involved in the formation and breakage of disulfide bonds and to intermediate filaments, suggesting a role in regulation of the spatial dynamics of the intermediate filament network. Indeed, loss of SRRD results in aberrant intermediate filament fibrils and the impaired formation of aggresomes, including blunted vimentin cage structure, during proteotoxic stress. Interestingly, SRRD also localizes to aggresomes and unfolded proteins, and rescues proteotoxicity in yeast whereby its N-terminal low complexity domain is sufficient to induce this affect. Altogether this suggests an unanticipated and broad role for SRRD in cytoskeletal organization and cellular proteostasis.
Journal Article
Telemonitoring in heart failure patients treated by cardiac resynchronisation therapy with defibrillator (CRT-D): the TELECART Study
by
Santulli, G.
,
Santamaria, M.
,
Sardu, C.
in
Aged
,
Cardiac arrhythmia
,
Cardiac Resynchronization Therapy - methods
2016
Summary Aim Telemonitoring (TM) is a safe and efficient monitoring system for internal cardioverter defibrillator device (ICD) recipients. TM has been used to track info on the clinical status of heart failure patients treated by ICD and/or cardiac resynchronisation therapy defibrillator (CRT‐D). The aim of this study was to investigate the impact of TM on clinical outcomes in a population of CRT‐D patients with heart failure. Methods In a multicentre, randomised study, patients with chronic heart failure, New York Heart Association (NYHA) functional class II or III, left bundle branch block, severe left ventricle ejection fraction reduction (LVEF < 35%) have been identified and screened. Results One hundred and ninety‐one patients have been randomised to receive either a CRT‐D with TM or a CRT‐D with traditional ambulatory monitoring (control group) and completed the 12‐month study follow‐up. Primary endpoints were all cause death, cardiac death and hospital admission for heart failure. Secondary endpoints were atrial fibrillation, sustained episodes, non‐sustained and self terminated ventricular tachyarrhythmia, sustained ventricular tachycardia, and ventricular fibrillation, ICD shocks and percentage of CRT‐D responder patients. Univariate analysis identified the following factors predicting hospitalisation: TM, age, chronic kidney disease, hypercholesterolaemia, LVEF and NYHA class. At multivariate analysis, TM was the only factor predicting heart failure hospitalisation (hazard ratio 0.6, 0.42–0.79, 95% CI, p = 0.002), without affecting overall mortality and cardiac deaths events. Conclusions Taken together, our data indicate the importance of TM in predicting heart failure hospitalisation in patients treated with CRT‐D.
Journal Article
Experimental characterization of the energetics of quantum logic gates
2020
We characterize the energetic footprint of a two-qubit quantum gate from the perspective of non-equilibrium quantum thermodynamics. We experimentally reconstruct the statistics of energy and entropy fluctuations following the implementation of a controlled-unitary gate, linking them to the performance of the gate itself and the phenomenology of Landauer’s principle at the single-quantum level. Our work thus addresses the energetic cost of operating quantum circuits, a problem that is crucial for the grounding of the upcoming quantum technologies.
Journal Article