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"Baskin, Robert"
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Magnetised quark nuggets in the atmosphere
by
Swaim, Criss
,
Jones, Haydn
,
Baskin, Robert L.
in
639/766/34/124
,
639/766/34/4119
,
639/766/419/1131
2021
A search for magnetised quark nuggets (MQN) is reported using acoustic signals from hydrophones placed in the Great Salt Lake (GSL) in the USA. No events satisfying the expected signature were seen. This observation allows limits to be set on the flux of MQNs penetrating the Earth’s atmosphere and depositing energy in the GSL. The expected signature of the events was derived from pressure pulses caused by high-explosive cords between the lake surface and bottom at various locations in the GSL. The limits obtained from this search are compared with those obtained from previous searches and are compared to models for the formation of MQNs.
Journal Article
A toxin-based approach to neuropeptide and peptide hormone discovery
2023
Peptide hormones and neuropeptides form a diverse class of bioactive secreted molecules that control essential processes in animals. Despite breakthroughs in peptide discovery, many signaling peptides remain undiscovered. Recently, we demonstrated the use of somatostatin-mimicking toxins from cone snails to identify the invertebrate ortholog of somatostatin. Here, we show that this toxin-based approach can be systematically applied to discover other unknown secretory peptides that are likely to have signaling function. Using large sequencing datasets, we searched for homologies between cone snail toxins and secreted proteins from the snails’ prey. We identified and confirmed expression of five toxin families that share strong similarities with unknown secretory peptides from mollusks and annelids and in one case also from ecdysozoans. Based on several lines of evidence we propose that these peptides likely act as signaling peptides that serve important physiological functions. Indeed, we confirmed that one of the identified peptides belongs to the family of crustacean hyperglycemic hormone, a peptide not previously observed in Spiralia. We propose that this discovery pipeline can be broadly applied to other systems in which one organism has evolved molecules to manipulate the physiology of another.
Journal Article
Characteristics and controls on the distribution of sublittoral microbial bioherms in Great Salt Lake, Utah: Implications for understanding microbialite development
by
Della Porta, Giovanna
,
Baskin, Robert L.
,
Wright, V. Paul
in
Anthropogenic factors
,
Aquatic ecosystems
,
Basins
2022
Side‐scan sonar and Compressed High Intensity Radar Pulse mapping of Great Salt Lake, Utah, linked to reprocessing of acoustic data from bathymetric surveys, has enabled the distribution of microbial bioherms to be assessed. Bioherms occupy an estimated area >700 km2 in the south arm and >300 km2 in the north arm. Distributions vary from statistically dispersed to clustered, and in this latter case, are predominantly located on metre‐scale, fault‐controlled topographic highs, with sediment infilling intervening lows between adjacent offsets. Individual bioherms are circular to oblate and range from centimetres to over 2 m in diameter. In some areas, bioherm heights were measured at more than 1.5 m above adjacent substrate. Sublittoral bioherms are made of aragonite, calcite and minor dolomite precipitated due to physico‐chemical, biologically induced and influenced carbonate mineralization processes in association with microbial mats. Bioherm fabrics vary at the millimetre to centimetre‐scale and consist of leiolitic and clotted peloidal micrite‐grade carbonate, sinuous threads of spherulitic fibrous aragonite crystals, laminated micrite boundstone and internal carbonate mud sediment with peloids and ooids. The identification of factors that influence microbial bioherm occurrence and spatial distribution in Great Salt Lake is limited to a set of collinear physical, chemical and biological variables that are confined to a localised closed system, such as salinity, water depth, wave energy, stable substrate and sediment accumulation. Anthropogenic modifications to Great Salt Lake resulting in increased salinity have exceeded the salinity range in which bioherm‐mediating microbial communities can survive, effectively defining an upper limit of salinity for bioherm microbial community viability. The better understanding of the distribution of microbial bioherms has significant implications for managing and protecting the lake ecosystem and may provide insights into the physical and chemical controls that existed during the formation of fossil microbialites in deep time. Using geophysical techniques supported by diving, video and sampling, the extent of the sublittoral microbial bioherms in the Great Salt Lake has been estimated. This has not been possible in the past due to the poor visibility caused by high salinity. Bioherms occupy an estimated area >700 km2 in the south arm and >300 km2 in the north arm.
Journal Article
Molecular analysis reveals a high diversity of Anopheles species in Karama, West Sulawesi, Indonesia
2020
Background
Understanding local
Anopheles
species compositions and bionomic traits are vital for an effective malaria vector intervention strategy. Though eight malaria vectors, including species complexes, have been documented across the island of Sulawesi, Indonesia, a comprehensive survey linking morphological and molecular species identification has not been conducted in this global hotspot of biodiversity.
Results
Eighteen distinct species of
Anopheles
were molecularly identified in a 1 km
2
area in Karama village, West Mamuju Province, Sulawesi. Known species included
An. aconitus
,
An. karwari
,
An. peditaeniatus
,
An. vagus
,
An. barbirostris
,
An. tessellatus
,
An. nigerrimus
,
An. crawfordi
,
An. maculatus, An. flavirostris
and
An. kochi
. Of the 18 distinct sequence groups identified through both ribosomal DNA internal transcribed spacer region 2, and mitochondrial DNA cytochrome
c
oxidase subunit 1 loci, 8 could not be identified to species through comparison to published sequences. The comparison of morphological and molecular identities determined that interpretations of local species compositions for primary and expected species in Karama (
An. barbirostris
and
An. vagus
) had the highest rate of accuracy (92.1% and 87.6%, respectively) when compared to molecular analysis. However, the remaining distinct sequences molecularly identified to species were identified correctly by morphological methods less frequently, from 0 to 83%.
Conclusions
Karama, Indonesia has a high diversity of
Anopheles
spp. The unexpected high number of
Anopheles
species in a small area points to possible complex transmission dynamics and limitations with vector control based on possible varying behaviors and interactions with both humans and interventions. Morphological identification of
Anopheles
spp. in this study was more accurate for primary and expected species than secondary or unexpected species. Finally, the inability to identify seven sequence groups to species with consensus sequences implies that future studies employing sequencing are required to clarify species compositions in the Nigerrimus Subgroup, among others, as well as their distribution and vector status. Use of molecular methods in conjunction with morphological investigations for analysis of species composition, population dynamics and bionomic characteristics is directly implicated in understanding drivers of malaria transmission, intervention effectiveness, and the pursuit of malaria elimination.
Journal Article
Characterization of vector communities and biting behavior in South Sulawesi with host decoy traps and human landing catches
by
Burton, Timothy A.
,
Aulya, Muhammad Sultanul
,
Wardiman, Muhammad
in
Abundance
,
Alphavirus - isolation & purification
,
Animals
2020
Background
Indonesia has high mosquito diversity, with circulating malaria and arboviruses. Human landing catches (HLC) are ethically questionable where arboviral transmission occurs. The host decoy trap (HDT) is an exposure-free alternative outdoor sampling device. To determine HDT efficacy for local culicids, and to characterize local mosquito fauna, the trapping efficacy of the HDT was compared to that of HLCs in one peri-urban (Lakkang) and one rural (Pucak) village in Sulawesi, Indonesia.
Results
In Lakkang the outdoor HLCs collected significantly more
Anopheles
per night (
n
= 22 ± 9) than the HDT (
n
= 3 ± 1), while the HDT collected a significantly greater nightly average of
Culex
mosquitoes (
n
= 110 ± 42), than the outdoor HLC (
n
= 15.1 ± 6.0). In Pucak, there was no significant difference in
Anopheles
collected between trap types; however, the HDT collected significantly more
Culex
mosquitoes than the outdoor HLC nightly average (
n
= 53 ± 11
vs
14 ± 3). Significantly higher proportions of blood-fed mosquitoes were found in outdoor HLC (
n
= 15 ± 2%) compared to HDT (
n
= 2 ± 0%). More blood-fed culicines were collected with outdoor HLC compared to the HDT, while
Anopheles
blood-fed proportions did not differ. For the HDT, 52.6%, 36.8% and 10.5% of identified blood meals were on cow, human, and dog, respectively. Identified blood meals for outdoor HLCs were 91.9% human, 6.3% cow, and 0.9% each dog and cat. Mosquitoes from Pucak were tested for arboviruses, with one
Culex
pool and one
Armigeres
pool positive for flavivirus, and one
Anopheles
pool positive for alphavirus.
Conclusions
The HDT collected the highest abundance of culicine specimens. Outdoor HLCs collected the highest abundance of
Anopheles
specimens. Although the HDT can attract a range of different Asian mosquito genera and species, it remains to be optimized for
Anopheles
in Asia. The high proportion of human blood meals in mosquitoes collected by outdoor HLCs raises concerns on the potential exposure risk to collectors using this methodology and highlights the importance of continuing to optimize a host-mimic trap such as the HDT.
Journal Article
Ero1-Mediated Reoxidation of Protein Disulfide Isomerase Accelerates the Folding of Cone Snail Toxins
by
O’Brien, Henrik
,
Baskin, Robert P.
,
Bandyopadhyay, Pradip K.
in
Amino acids
,
Animals
,
Conotoxins - chemistry
2018
Disulfide-rich peptides are highly abundant in nature and their study has provided fascinating insight into protein folding, structure and function. Venomous cone snails belong to a group of organisms that express one of the largest sets of disulfide-rich peptides (conotoxins) found in nature. The diversity of structural scaffolds found for conotoxins suggests that specialized molecular adaptations have evolved to ensure their efficient folding and secretion. We recently showed that canonical protein disulfide isomerase (PDI) and a conotoxin-specific PDI (csPDI) are ubiquitously expressed in the venom gland of cone snails and play a major role in conotoxin folding. Here, we identify cone snail endoplasmic reticulum oxidoreductin-1 (Conus Ero1) and investigate its role in the oxidative folding of conotoxins through reoxidation of cone snail PDI and csPDI. We show that Conus Ero1 preferentially reoxidizes PDI over csPDI, suggesting that the reoxidation of csPDI may rely on an Ero1-independent molecular pathway. Despite the preferential reoxidation of PDI over csPDI, the combinatorial effect of Ero1 and csPDI provides higher folding yields than Ero1 and PDI. We further demonstrate that the highest in vitro folding rates of two model conotoxins are achieved when all three enzymes are present, indicating that these enzymes may act synergistically. Our findings provide new insight into the generation of one of the most diverse classes of disulfide-rich peptides and may improve current in vitro approaches for the production of venom peptides for pharmacological studies.
Journal Article
Mark-release-recapture studies reveal preferred spatial and temporal behaviors of Anopheles barbirostris in West Sulawesi, Indonesia
by
Nur, Nirwana
,
Davidson, Jenna R.
,
Baskin, Robert N.
in
Anopheles
,
Anopheles barbirostris
,
Artemisinin
2019
Background
Population density, dispersion patterns, flight distances, and survival rate of vector mosquitoes are all contributors to vectorial capacity that may be estimated in a single experimental method: mark-release-recapture (MRR). In this study, these key parameters were measured for mosquito populations in Karama, West Sulawesi, Indonesia.
Methods
Two mark-release-recapture (MRR) experiments were carried out in Karama village to characterize seasonality differences, if any: wet season (December 2013, MRR1) and dry season (May 2014, MRR2). For both experiments, mosquitoes were marked according to release site/date and were released on four consecutive nights. Four sampling methodologies were utilized to enable recapture: human landing catches (HLCs), kelambu traps and barrier screens.
Results
98.7% of all catches were molecularly confirmed as
Anopheles barbirostris
. During the wet season,
An. barbirostris
demonstrated no preference toward endophagy. In the dry season,
An. barbirostris
demonstrated an endophagic preference. The duration of the feeding cycle for
An. barbirostris
was determined to be 5 days during the wet season and 3.7 days during the dry season, though an anomaly likely caused the wet season feeding cycle to be overestimated. The largest percentages of recaptured mosquitoes were collected in a single site during both seasons. The only significant relationship with mosquito dispersal was site of release and recapture. Finally, dispersal rates of
An. barbirostris
frequently ranged up to 800 m (the maximum measurable distance in this study) within a single day of release.
Conclusions
This study estimated key vector parameters for
An. barbirostris
an understudied species complex, in Karama, West Sulawesi, Indonesia. Despite the length of the feeding cycle, the high indoor biting rates demonstrated by
An. barbirostris
in Karama suggest that the use of IRSs and LLINs, especially during the dry season, would have a substantial impact on the panmictic
An. barbirostris
population.
Journal Article
Using barrier screens to characterize mosquito composition, flight activity, and abdominal status in South Lampung, Indonesia
by
St. Laurent, Brandy
,
Davidson, Jenna R.
,
Baskin, Robert N.
in
Abdomen
,
Age composition
,
age structure
2018
Background
Mosquito sampling methods target different aspects of mosquito behavior and are subject to trap and location specific biases. The barrier screen sampling method was developed and tested to sample free-flying, blood-fed, and host-seeking mosquitoes. During a pilot study, this method was useful in obtaining an unbiased sample of mosquitoes flying between outdoor larval habitats, and sites where blood meals were obtained. However, a relatively small number of blood-fed
Anopheles
mosquitoes were collected in Indonesia during the pilot study. The sampling method was extended in South Lampung, Indonesia, to enable the collection of blood-fed mosquitoes. This study aimed to intercept mosquitoes flying between human habitations and larval habitats with a barrier screen and to characterize mosquito composition, flight characteristics (direction, height and time), abdominal status, and parity.
Results
Barrier screens intercepted 15 different mosquito species in South Lampung: eight
Anopheles
spp. and seven
Culex
spp. Species compositions varied among the villages in South Lampung. About 15% of
Anopheles
spp. caught were blood-fed, of which 28.2% of those tested had fed on humans. This is the first time human blood-fed anophelines have been collected in Indonesia using barrier screens. Blood meals identified included cow, dog, goat, and human, as well as mixed blood meals. Activity of unfed
An. subpictus
, the primary vector collected, flying towards human habitations peaked between 20:00–12:00 h, with a slow decline in activity until 18:00 h. Unfed and fed
An. sundaicus
, had a different activity profile compared to
An. subpictus
. Other species demonstrated varied peak activity times, with earlier activity occurring as a general trend. For the
Anopheles
mosquitoes collected, 55.5% were collected below 0.5 m and 83.9% were captured resting < 1 m from the ground. Parity dissections enabled age structure by species, which revealed species-specific traits such as nulliparous
An. subpictus
being more active early in the night relative to
An. sundaicus
.
Conclusions
This study demonstrates that barrier screens are an effective mosquito sampling method that can be used to gain insights into local mosquito species composition, flight characteristics (direction, height and time), abdominal status, and parity.
Journal Article
The Great Salt Lake Ecosystem (Utah, USA): long term data and a structural equation approach
2011
Great Salt Lake (Utah, USA) is one of the world's largest hypersaline lakes, supporting many of the western U.S.'s migratory waterbirds. This unique ecosystem is threatened, but it and other large hypersaline lakes are not well understood. The ecosystem consists of two weakly linked food webs: one phytoplankton-based, the other organic particle/benthic algae-based.
Seventeen years of data on the phytoplankton-based food web are presented: abundances of nutrients (N and P), phytoplankton (Chlorophyta, Bacillariophyta, Cyanophyta), brine shrimp (
Artemia franciscana
), corixids (
Trichocorixa verticalis
), and Eared Grebes (
Podiceps nigricollis
). Abundances of less common species, as well as brine fly larvae (
Ephydra cinerea
and
hians
) from the organic particle/benthic algae-based food web are also presented. Abiotic parameters were monitored: lake elevation, temperature, salinity, PAR, light penetration, and DO. We use these data to test hypotheses about the phytoplankton-based food web and its weak linkage with the organic particle/benthic algae-based food web via structural equation modeling.
Counter to common perceptions, the phytoplankton-based food web is not limited by high salinity, but principally through phytoplankton production, which is limited by N and grazing by brine shrimp. Annual N abundance is highly variable and depends on lake volume, complex mixing given thermo- and chemo-clines, and recycling by brine shrimp. Brine shrimp are food-limited, and predation by corixids and Eared Grebes does not depress their numbers. Eared Grebe numbers appear to be limited by brine shrimp abundance. Finally, there is little interaction of brine fly larvae with brine shrimp through competition, or with corixids or grebes through predation, indicating that the lake's two food webs are weakly connected.
Results are used to examine some general concepts regarding food web structure and dynamics, as well as the lake's future given expected anthropogenic impacts.
Journal Article
Impact of Work Arrangements and Emotional Intelligence on Self-Esteem and Burnout
The evolution of work environments, particularly the rise of remote and hybrid work models, has introduced new challenges to and opportunities for employee well-being. These shifts may influence the psychological and emotional dynamics of the workplace. This study explored the relationships between work arrangements, Trait Emotional Intelligence (TEI), self-esteem, and burnout among working-age adults. Rather than categorizing participants into distinct work models, this research treated work arrangements as a continuum, with participants reporting the proportion of their remote versus on-site work hours. TEI was examined as a factor influencing self-esteem and burnout. The study employed a correlational research design, using standardized instruments, such as the Rosenberg Self-Esteem Scale (RSE), to measure self-esteem and the Maslach Burnout Inventory (MBI) to assess burnout via its three subscales: Emotional Exhaustion, Depersonalization, and Personal Accomplishment. TEI was measured using the Trait Emotional Intelligence Questionnaire – Short Form (TEIQue-SF). The collected data were analyzed to assess how the balance of remote and on-site work impacts psychological outcomes, with particular attention to the moderating role of TEI. The inclusion of demographic factors, such as gender and age, provided additional insights into how work arrangements may affect different population groups. The findings of this study may inform the development of workplace policies that promote employee well-being and organizational productivity, offering practical applications for both employees and employers in today’s evolving work landscape.
Dissertation