Catalogue Search | MBRL
Search Results Heading
Explore the vast range of titles available.
MBRLSearchResults
-
DisciplineDiscipline
-
Is Peer ReviewedIs Peer Reviewed
-
Item TypeItem Type
-
SubjectSubject
-
YearFrom:-To:
-
More FiltersMore FiltersSourceLanguage
Done
Filters
Reset
41
result(s) for
"Baumgartner, Simone"
Sort by:
Interacting Symbionts and Immunity in the Amphibian Skin Mucosome Predict Disease Risk and Probiotic Effectiveness
by
McKenzie, Valerie
,
Woodhams, Douglas C.
,
Brandt, Hannelore
in
Agricultural management
,
Agriculture
,
Amphibia
2014
Pathogenesis is strongly dependent on microbial context, but development of probiotic therapies has neglected the impact of ecological interactions. Dynamics among microbial communities, host immune responses, and environmental conditions may alter the effect of probiotics in human and veterinary medicine, agriculture and aquaculture, and the proposed treatment of emerging wildlife and zoonotic diseases such as those occurring on amphibians or vectored by mosquitoes. Here we use a holistic measure of amphibian mucosal defenses to test the effects of probiotic treatments and to assess disease risk under different ecological contexts. We developed a non-invasive assay for antifungal function of the skin mucosal ecosystem (mucosome function) integrating host immune factors and the microbial community as an alternative to pathogen exposure experiments. From approximately 8500 amphibians sampled across Europe, we compared field infection prevalence with mucosome function against the emerging fungal pathogen Batrachochytrium dendrobatidis. Four species were tested with laboratory exposure experiments, and a highly susceptible species, Alytes obstetricans, was treated with a variety of temperature and microbial conditions to test the effects of probiotic therapies and environmental conditions on mucosome function. We found that antifungal function of the amphibian skin mucosome predicts the prevalence of infection with the fungal pathogen in natural populations, and is linked to survival in laboratory exposure experiments. When altered by probiotic therapy, the mucosome increased antifungal capacity, while previous exposure to the pathogen was suppressive. In culture, antifungal properties of probiotics depended strongly on immunological and environmental context including temperature, competition, and pathogen presence. Functional changes in microbiota with shifts in temperature provide an alternative mechanistic explanation for patterns of disease susceptibility related to climate beyond direct impact on host or pathogen. This nonlethal management tool can be used to optimize and quickly assess the relative benefits of probiotic therapies under different climatic, microbial, or host conditions.
Journal Article
Changes in macroinvertebrate trophic structure along a land-use gradient within a lowland stream network
by
Baumgartner, Simone D.
,
Robinson, Christopher T.
in
anthropogenic activities
,
Anthropogenic factors
,
Biomedical and Life Sciences
2017
Running waters are among the most threatened ecosystems globally, having altered hydrological regimes, homogenized habitat, and impaired water quality. These multiple stressors impact aquatic biodiversity and ecosystem function across space and time, although a clear mechanistic understanding is still lacking. Here, we examined the trophic response of macroinvertebrates among streams in a Swiss lowland catchment encompassing a gradient of land uses. Clear compositional changes were observed as anthropogenic impacts increased from least-impacted to agricultural and urbanized sites. Taxonomic diversity was lowest at sites with morphological and water quality impairment (agricultural sites), whereas taxonomic identity (susceptible vs. generalist species) mainly changed due to water quality degradation (agricultural and urban sites) based on the SPEAR (pesticides) index. Using stable isotopes (δ
13
C, δ
15
N), a simplification in macroinvertebrate trophic structure was evident along the land use gradient. At a site receiving wastewater treatment effluent, stable isotopes also revealed trophic shifts in primary consumers that corresponded to changes in available food resources. Results further showed that some taxa losses, e.g., the mayfly
Ecdyonurus
, to land- use effects may be due to low trophic plasticity. The combination of analyses, including stable isotopes, provided an improved mechanistic understanding of community and population responses to land-use changes along river networks.
Journal Article
Double Proton Tautomerism via Intra- or Intermolecular Pathways? The Case of Tetramethyl Reductic Acid Studied by Dynamic NMR: Hydrogen Bond Association, Solvent and Kinetic H/D Isotope Effects
2021
Using dynamic liquid-state NMR spectroscopy a degenerate double proton tautomerism was detected in tetramethyl reductic acid (TMRA) dissolved in toluene-d8 and in CD2Cl2. Similar to vitamin C, TMRA belongs to the class of reductones of biologically important compounds. The tautomerism involves an intramolecular HH transfer that interconverts the peripheric and the central positions of the two OH groups. It is slow in the NMR time scale around 200 K and fast at room temperature. Pseudo-first-order rate constants of the HH transfer and of the HD transfer after suitable deuteration were obtained by line shape analyses. Interestingly, the chemical shifts were found to be temperature dependent carrying information about an equilibrium between a hydrogen bonded dimer and a monomer forming two weak intramolecular hydrogen bonds. The structures of the monomer and the dimer are discussed. The latter may consist of several rapidly interconverting hydrogen-bonded associates. A way was found to obtain the enthalpies and entropies of dissociation, which allowed us to convert the pseudo-first-order rate constants of the reaction mixture into first-order rate constants of the tautomerization of the monomer. Surprisingly, these intrinsic rate constants were the same for toluene-d8 and CD2Cl2, but in the latter solvent more monomer is formed. This finding is attributed to the dipole moment of the TMRA monomer, compensated in the dimer, and to the larger dielectric constant of CD2Cl2. Within the margin of error, the kinetic HH/HD isotope effects were found to be of the order of 3 but independent of temperature. That finding indicates a stepwise HH transfer involving a tunnel mechanism along a double barrier pathway. The Arrhenius curves were described in terms of the Bell–Limbach tunneling model.
Journal Article
Short-term colonization dynamics of macroinvertebrates in restored channelized streams
by
Baumgartner, Simone D.
,
Robinson, Christopher T.
in
Analysis
,
Animal populations
,
Biomedical and Life Sciences
2017
Macroinvertebrate colonization of restored rivers is a function of dispersal into the restored reach and its suitability for population establishment. To maximize potential for colonization success, spatial considerations such as distance to colonizer source pools and dispersal pathways must be included in restoration planning. Unfortunately, the dispersal abilities of macroinvertebrates and ecological importance of different dispersal modes for colonization are still poorly understood. We used a field experiment that controlled colonization by passive drift and allowed distinction between active upstream aquatic and active/passive aerial dispersal, thus testing their differential importance during colonization of experimentally restored stream reaches. Two agricultural streams emanating below culverts were longitudinally separated along the first 30 m and one stream side each was covered with a fine-mesh net to limit aerial dispersal. Colonization of manually disturbed background and experimentally introduced cobble substrate was investigated over 6 months. We found that upstream in-stream dispersal, especially in these agricultural streams, can be rapid (days) and play an important role in the short-term colonization of restored streams. We conclude that a landscape perspective, in addition to in-stream measures, must be considered when attempting to restore streams dominated by agricultural and urban land use that constrains available species pools and limits dispersal pathways.
Journal Article
FORUM: Ecological networks: the missing links in biomonitoring science
by
Baumgartner, Simone
,
Woodward, Guy
,
Thompson, Murray
in
anthropogenic activities
,
Anthropogenic factors
,
anthropogenic stress
2014
Monitoring anthropogenic impacts is essential for managing and conserving ecosystems, yet current biomonitoring approaches lack the tools required to deal with the effects of stressors on species and their interactions in complex natural systems. Ecological networks (trophic or mutualistic) can offer new insights into ecosystem degradation, adding value to current taxonomically constrained schemes. We highlight some examples to show how new network approaches can be used to interpret ecological responses. Synthesis and applications. Augmenting routine biomonitoring data with interaction data derived from the literature, complemented with ground‐truthed data from direct observations where feasible, allows us to begin to characterise large numbers of ecological networks across environmental gradients. This process can be accelerated by adopting emerging technologies and novel analytical approaches, enabling biomonitoring to move beyond simple pass/fail schemes and to address the many ecological responses that can only be understood from a network‐based perspective.
Journal Article
Ecological networks: the missing links in biomonitoring science
by
Pocock, Michael J. O.
,
Baumgartner, Simone
,
Jenkins, Gareth B.
in
Animal, plant and microbial ecology
,
Applied ecology
,
Biological and medical sciences
2014
1. Monitoring anthropogenic impacts is essential for managing and conserving ecosystems, yet current biomonitoring approaches lack the tools required to deal with the effects of stressors on species and their interactions in complex natural systems. 2. Ecological networks (trophic or mutualistic) can offer new insights into ecosystem degradation, adding value to current taxonomically constrained schemes. We highlight some examples to show how new network approaches can be used to interpret ecological responses. 3. Synthesis and applications. Augmenting routine biomonitoring data with interaction data derived from the literature, complemented with ground-truthed data from direct observations where feasible, allows us to begin to characterise large numbers of ecological networks across environmental gradients. This process can be accelerated by adopting emerging technologies and novel analytical approaches, enabling biomonitoring to move beyond simple pass/fail schemes and to address the many ecological responses that can only be understood from a network-based perspective.
Journal Article
Interacting Symbionts and Immunity in the Amphibian Skin Mucosome Predict Disease Risk and Probiotic Effectiveness: e96375
by
Brandt, Hannelore
,
Baumgartner, Simone
,
Kielgast, Jos
in
Alytes obstetricans
,
Batrachochytrium dendrobatidis
2014
Pathogenesis is strongly dependent on microbial context, but development of probiotic therapies has neglected the impact of ecological interactions. Dynamics among microbial communities, host immune responses, and environmental conditions may alter the effect of probiotics in human and veterinary medicine, agriculture and aquaculture, and the proposed treatment of emerging wildlife and zoonotic diseases such as those occurring on amphibians or vectored by mosquitoes. Here we use a holistic measure of amphibian mucosal defenses to test the effects of probiotic treatments and to assess disease risk under different ecological contexts. We developed a non-invasive assay for antifungal function of the skin mucosal ecosystem (mucosome function) integrating host immune factors and the microbial community as an alternative to pathogen exposure experiments. From approximately 8500 amphibians sampled across Europe, we compared field infection prevalence with mucosome function against the emerging fungal pathogen Batrachochytrium dendrobatidis. Four species were tested with laboratory exposure experiments, and a highly susceptible species, Alytes obstetricans, was treated with a variety of temperature and microbial conditions to test the effects of probiotic therapies and environmental conditions on mucosome function. We found that antifungal function of the amphibian skin mucosome predicts the prevalence of infection with the fungal pathogen in natural populations, and is linked to survival in laboratory exposure experiments. When altered by probiotic therapy, the mucosome increased antifungal capacity, while previous exposure to the pathogen was suppressive. In culture, antifungal properties of probiotics depended strongly on immunological and environmental context including temperature, competition, and pathogen presence. Functional changes in microbiota with shifts in temperature provide an alternative mechanistic explanation for patterns of disease susceptibility related to climate beyond direct impact on host or pathogen. This nonlethal management tool can be used to optimize and quickly assess the relative benefits of probiotic therapies under different climatic, microbial, or host conditions.
Journal Article
Spatially and time-resolved magnetization dynamics driven by spin–orbit torques
by
Gambardella, Pietro
,
Baumgartner, Manuel
,
Raabe, Jörg
in
639/301/1005/1008
,
639/766/119/1001
,
Damping
2017
Current-induced spin–orbit torques are one of the most effective ways to manipulate the magnetization in spintronic devices, and hold promise for fast switching applications in non-volatile memory and logic units. Here, we report the direct observation of spin–orbit-torque-driven magnetization dynamics in Pt/Co/AlO
x
dots during current pulse injection. Time-resolved X-ray images with 25 nm spatial and 100 ps temporal resolution reveal that switching is achieved within the duration of a subnanosecond current pulse by the fast nucleation of an inverted domain at the edge of the dot and propagation of a tilted domain wall across the dot. The nucleation point is deterministic and alternates between the four dot quadrants depending on the sign of the magnetization, current and external field. Our measurements reveal how the magnetic symmetry is broken by the concerted action of the damping-like and field-like spin–orbit torques and the Dzyaloshinskii–Moriya interaction, and show that reproducible switching events can be obtained for over 10
12
reversal cycles.
Time-resolved X-ray microscopy reveals the mechanism and speed of current-induced magnetization switching of Co/Pt dots under the combined effect of spin-orbit torques and Dzyaloshinskii–Moriya interaction.
Journal Article
Epidemiology and pathophysiology of autonomic seizures: a systematic review
by
Schmidt, Simone
,
Pirker, Susanne
,
Britto-Arias, Martha
in
Convulsions & seizures
,
Differential diagnosis
,
Epidemiology
2019
PurposeTo review the epidemiology and pathophysiology of autonomic symptoms and signs during epileptic seizures.MethodsWe performed a systematic literature search on the following autonomic symptoms and signs during epileptic seizures: cardiovascular changes, respiratory manifestations, gastrointestinal symptoms, cutaneous manifestations, sexual and genital manifestations, and urinary symptoms.ResultsAutonomic symptoms and signs can represent the predominant symptom at the onset of a focal seizure, which would then lead to the seizure being classified as a focal onset autonomic seizure. Conversely, clinically relevant autonomic symptoms and signs frequently accompany seizures of focal, generalized, and/or unknown onset, but the seizure is regardless classified according to other, more relevant features. Autonomic symptoms and signs do not represent mere reactions to motor activity or other behavioral seizure manifestations, but rather they are generated by epileptic discharges affecting the central autonomic network. We have reviewed the localizing and lateralizing information currently available on the seizure onset zone and on seizure propagation pathways as provided by systematic analysis of specific autonomic seizure symptoms and signs. We present data on how autonomic seizure symptoms and signs are useful for gaining a better understanding of the anatomical and functional organization of the central autonomic network. Finally, we discuss the differential diagnosis of focal autonomic seizures with autonomic symptoms and signs representing the sole seizure manifestation versus various non-epileptic conditions.ConclusionsAutonomic seizure symptoms and signs are relevant in clinical epileptology and open a unique window on the functional organization and pathophysiology of the central autonomic network.
Journal Article
Silver and gold nanoparticles as multi-chromatic lateral flow assay probes for the detection of food allergens
2019
In this study, we report the simultaneous use of gold and silver nanoparticles to set a multicolor multiplex lateral flow immunoassay (xLFIA). Silver nanoparticles (AgNPs), spherical in shape and characterized by a brilliant yellow color, were obtained by a new viable one-step synthetic protocol. AgNPs were stable over time and acceptably robust to conditions used for fabricating LFIA devices. These AgNPs were employed as a colorimetric probe in combination with two different kinds of gold nanoparticles (AuNPs) to set a visual xLFIA for detecting allergens. Surface plasmon resonance peaks of probes (AgNPs, spherical and desert rose-like AuNPs) were centered at 420, 525, and 620 nm, respectively. Therefore, the xLFIA output was easily interpreted through a “yellow magenta cyan (YMC)” color code. The prospect of the YMC xLFIA was demonstrated by simultaneously detecting three major allergens in bakery products. Antibodies directed towards casein, ovalbumin, and hazelnut allergenic proteins were individually adsorbed onto metal nanoparticles to produce three differently colored specific probes. These were inserted in a LFIA comprising three lines, each responsive for one allergen. The trichromatic xLFIA was able to detect allergenic proteins at levels as low as 0.1 mg/l and enabled the easy identification of the allergens in commercial biscuits based on the color of the probes.
Journal Article