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CONTENTS: Summary 655 I. Definitions of stress 656 II. The seed life cycle revisited in view of the eustress-distress concept 657 III. Common denominators of many stresses: reactive oxygen and nitrogen species 660 IV. Alarm 662 V. Resistance 664 VI. Exhaustion 666 VII. Conclusions 667 Acknowledgements 669 References 669 SUMMARY: ‘Stresses' that impact upon seeds can affect plant reproduction and productivity, and, hence, agriculture and biodiversity. In the absence of a clear definition of plant stress, we relate concepts from physics, medicine and psychology to stresses that are specific to seeds. Potential ‘eustresses' that enhance function and ‘distresses' that have harmful effects are considered in relation to the seed life cycle. Taking a triphasic biomedical stress concept published in 1936, the ‘General Adaptation Syndrome', to the molecular level, the ‘alarm' response is defined by post‐translational modifications and stress signalling through cross‐talk between reactive oxygen and nitrogen species, and seed hormones, that result in modifications to the transcriptome. Protection, repair, acclimation and adaptation are viewed as the ‘building blocks' of the ‘resistance' response, which, in seeds, are the basis for their longevity over centuries. When protection and repair mechanisms eventually fail, depending on dose and time of exposure to stress, cell death and, ultimately, seed death are the result, corresponding to ‘exhaustion'. This proposed seed stress concept may have wider applicability to plants in general.

Lichens are symbiotic photosynthesizing organisms with thalli formed by fungi and algae/cyanobacteria that possess high stress tolerance. One of the factors that contributes to the ability of a lichen to tolerate harsh environmental conditions is the presence of unique metabolites, including high-molecular-weight dark pigments termed melanins. The chemical composition and structure of lichen melanins remain poorly studied. We analyzed the elemental composition, the main functional groups, and the physicochemical properties of melanin extracted from Cetraria islandica and Pseudevernia furfuracea lichens. Based on the C/N ratio, this pigment is allomelanin. We also identified functional groups that provide photoprotective and antioxidant properties of melanin. Melanin synthesis might be an essential defense mechanism contributing to the survival of lichens under exposure to UV radiation.

Fresh snow and lichens (Cladonia rangiferina) were collected along two ~300-km transects in a regional survey around two smelter areas in Northern Ontario, i.e., the Sudbury and Timmins areas, in 2009–2010, as a part of a monitoring program. The samples were analyzed for Pb isotope ratios in snow from 47 sites, and in lichens from 28 sites, for background airborne lead and to determine the influence of distance versus local sources of Pb on a regional scale. Moreover, the lichen samples were split into two portions, the top portion, corresponding to recent growth (2–4 years), and the lower portion (up to 10+ years old) to determine the regime of recent versus old deposition. The study also investigated whether the isotopic signature in fresh snow (~1–2 weeks old) could correlate to the lichens’ recent growth. The Pb isotope signatures, reported as Pb isotope ratios 208Pb/206Pb and 207Pb/206Pb, in both snow and lichen recent growth were uniform over the region, except for localized influences near Sudbury and Timmins, suggesting that the background Pb represented remote sources for most of the region. Three-isotope plots 208Pb/206Pb versus 207Pb/206Pb of snow and lichens followed a linear model typical of mixing lines between two sources. As there are no statistical differences of Pb isotope ratios between fresh snow and recent lichen growth at neighboring stations, either type of sample may be used to describe the short-term record of airborne inputs. Finally, we found a strong relationship between the Pb isotope ratios of the recent growth (upper part) and old growth (lower part) of the lichens, with a slope of 0.9 between the lichen parts. This observation suggests either an isotopic segregation or the older parts of the lichens developed under different Pb source inputs in earlier times.

Soil microbial communities are important for biogeochemical processes, along with the cycling of nutrients in an ecosystem. Their enzymatic activities are key indicators of their responses to stress. The objective of this research was to assess the effect of land reclamation on microbial biomass and activities in soils impacted by metal contamination. Phospholipid fatty acid analysis (PLFA) (PLFA) results revealed a significant increase in total microbial biomass, fungi, actinomycetes, and bacteria when limed soils were compared to unlimed samples. This change in microbial biomass was associated with a significant increase of pH. The overall level of the β-glucosidase (BG), cellobiohydrolase (CBH), and aryl sulfatase (AS) activities was significantly higher in the dolomitic limestone treated soils than in the untreated samples. However, the activity of glycine aminopeptidase (GAP) was significantly lower in the limed soil than in unlimed samples used as reference. No significant differences (P ≥ 0.05) were observed between the two types of lands (limed vs unlimed) for other enzymes tested, which includes β-N-acetylglucosaminidase (NAGase), acid phosphatase (AP), alkaline phosphatase (ALP), leucine aminopeptidase (LAP), and peroxidase (PER). The levels of enzymatic responses also varied among sites. Overall, this study revealed for the first time the effects of liming on soil microbial activities in recently reclaimed sites damaged by metals.

BACKGROUND AND AIMS: The basic parameters of water relations were measured in Sphagnum mosses. The relationships of these parameters to the photosynthetic response to desiccation and the ecology of these mosses were then tested. METHODS: The water relations parameters of six Sphagnum species (mosses typical of wet habitats) and Atrichum androgynum (a moss more typical of mesophytic conditions) were calculated from pressure-volume isotherms. Photosynthetic properties during and after moderate desiccation were monitored by chlorophyll fluorescence. KEY RESULTS: When desiccated, the hummock-forming species S. fuscum and S. magellanicum lost more water before turgor started dropping than other sphagna inhabiting less exposed habitats (73 % compared with 56 % on average). Osmotic potentials at full turgor were similar in all species, with an average value of -1·1 MPa. Hummock sphagna had clearly more rigid cell walls than species of wet habitats (ε = 3·55 compared with 1·93 MPa). As a result, their chlorophyllous cells lost turgor at higher relative water contents (RWCs) than species of wet habitats (0·61 compared with 0·46) and at less negative osmotic potentials (-2·28 compared with -3·00 MPa). During drying, ΦPSII started declining earlier in hummock species (at an RWC of 0·65 compared with 0·44), and Fv/Fm behaved similarly. Compared with other species, hummock sphagna desiccated to -20 or -40 MPa recovered more completely after rehydration. Atrichum androgynum responded to desiccation similarly to hummock sphagna, suggesting that their desiccation tolerance may have a similar physiological basis. CONCLUSIONS: Assuming a fixed rate of desiccation, the higher water-holding capacities of hummock sphagna will allow them to continue metabolism for longer than other species. While this could be viewed as a form of 'desiccation avoidance', hummock species also recover faster than other species during rehydration, suggesting that they have higher inherent tolerance. This may help them to persist in drought-exposed hummocks. In contrast, species growing in wet habitats lack such strong avoidance and tolerance mechanisms. However, their turgor maintenance mechanisms, for example more elastic cell walls, enable them to continue metabolizing longer as their water contents fall to the turgor-loss point.

Lichens are unique extremophilic organisms due to their phenomenal resistance to adverse environmental factors, including ultraviolet (UV) irradiation. Melanization plays a special role in the protection of lichens from UV-B stress. In the present study, we analyzed the binding of melanins with the components of cell walls of the mycobiont of the upper cortex in the melanized lichen thalli Lobaria pulmonaria. Using scanning electron and atomic force microscopy, the morphological and nanomechanical characteristics of the melanized layer of mycobiont cells were visualized. Melanization of lichen thalli led to the smoothing of the surface relief and thickening of mycobiont cell walls, as well as the reduction in adhesion properties of the lichen thallus. Treatment of thalli with hydrolytic enzymes, especially chitinase and lichenase, enhanced the yield of melanin from melanized thalli and promoted the release of carbohydrates, while treatment with pectinase increased the release of carbohydrates and phenols. Our results suggest that melanin can firmly bind with hyphal cell wall carbohydrates, particularly chitin and 1,4-β-glucans, strengthening the melanized upper cortex of lichen thalli, and thereby it can contribute to lichen survival under UV stress.

We have developed a new DH mapping population for oilseed rape, named TNDH, using genetically and phenotypically diverse parental lines. We used the population in the construction of a high stringency genetic linkage map, consisting of 277 loci, for use in quantitative genetic analysis. A proportion of the markers had been used previously in the construction of linkage maps for Brassica species, thus permitting the alignment of maps. The map includes 68 newly developed Sequence Tagged Site (STS) markers targeted to the homologues of defined genes of A. thaliana. The use of these markers permits the alignment of our linkage map with the A. thaliana genome sequence. An additional 74 loci (31 newly developed STS markers and 43 loci defined by SSR and RFLP markers that had previously been used in published linkage maps) were added to the map. These markers increased the resolution of alignment of the newly constructed linkage map with existing Brassica linkage maps and the A. thaliana genome sequence. We conducted field trials with the TNDH population at two sites, and over 2 years, and identified reproducible QTL for seed oil content and erucic acid content. The results provide new insights into the genetic control of seed oil and erucic acid content in oilseed rape, and demonstrate the utility of the linkage map and population.

Mining activities lead to serious land deterioration and large scale mine waste generation. Reclamation has been carried out on several technogenic materials to encourage the development of soils. To date no detailed studies have been conducted to assess if soil developed in reclaimed tailings can be suitable for microbial community sustainability and associated plant population. This study investigated if 1) soil metal contamination affects microbial biomass and composition in sulphide tailings and 2) phytoremediation of tailing increases microbial abundance, diversity, and function. Microbial biomass was assessed using Phospholipid fatty acid analysis (PLFA). Soil bacterial and fungal microbiota was determined by high throughput sequencing of 16S rRNA gene for bacteria and internal transcribed spacer region for fungi using the Illumina platform. Total copper, nickel, iron, and titium were higher in unreclaimed sites compared to vegetated areas but the total microbial biomass was significantly higher in reclaimed sites compared to reference areas. More importantly, the levels of microbial biomass were not impacted by metals since the bioavailable Cu, Ni, and Ti were low in all the sites. Site-specific bacterial and fungal genera were identified . Proteobacteria was the most dominant bacterial phylum while Ascomicota was the predominant fungal phylum . Interestinlgy, Acidiferrobacter , an acidophilic, thermotolerant and facultatively anaerobic was the most predominant genus in unreclaimed site that is characterized by extreme acidity (pH = 2.8). Analysis of microbial diversity revealed higher Chao 1, # of OTUs, Shannon index, and species richness in bacterial and fungal populations from reclaimed sites compared to controls. The levels of β-glucosidase (BG), cellobiohydrolase (CBH), β-N-acetylglucosaminidase (NAGase), aryl sulfatase (AS), acid phosphatase (AP), alkaline phosphatase (AlP), glycine aminopeptidase (GAP), and leucine aminopeptidase (LAP) activities were significantly higher in vegetated sites compared to reference areas. Strong positive correlation coefficients were observed between soil organic matter and total microbial biomass (r = 0.99). These two factors were positively correlated with enzymatic activities and bacterial population diversity. Overall, newly developed soils can sustain diverse microbial communities and associated vegetations.

Over the last few decades attention has largely focused on airway inflammation in asthma, but more recently it has been appreciated that there are important structural airway changes which have been grouped together under the term “airway remodelling”. It is only now that questions have been asked about the impact of treatment on these structural changes. This review examines the nature of these structural airway changes, the mechanisms of their generation, their potential consequences, and what is known about the ability of anti-asthma treatments to modulate these changes.

Background: Tumour necrosis factor α (TNFα) is a major therapeutic target in a range of chronic inflammatory disorders characterised by a Th1 type immune response in which TNFα is generated in excess. By contrast, asthma is regarded as a Th2 type disorder, especially when associated with atopy. However, as asthma becomes more severe and chronic, it adopts additional characteristics including corticosteroid refractoriness and involvement of neutrophils suggestive of an altered inflammatory profile towards a Th1 type response, incriminating cytokines such as TNFα. Methods: TNFα levels in bronchoalveolar lavage (BAL) fluid of 26 healthy controls, 42 subjects with mild asthma and 20 with severe asthma were measured by immunoassay, and TNFα gene expression was determined in endobronchial biopsy specimens from 14 patients with mild asthma and 14 with severe asthma. The cellular localisation of TNFα was assessed by immunohistochemistry. An open label uncontrolled clinical study was then undertaken in 17 subjects with severe asthma to evaluate the effect of 12 weeks of treatment with the soluble TNFα receptor-IgG1Fc fusion protein, etanercept. Results: TNFα levels in BAL fluid, TNFα gene expression and TNFα immunoreative cells were increased in subjects with severe corticosteroid dependent asthma. Etanercept treatment was associated with improvement in asthma symptoms, lung function, and bronchial hyperresponsiveness. Conclusions: These findings may be of clinical significance in identifying TNFα as a new therapeutic target in subjects with severe asthma. The effects of anti-TNF treatment now require confirmation in placebo controlled studies.