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An understanding of the effects of fishing on marine ecosystems relies on information about the conserved state of these environments. Non-conventional approaches such as the use of historical data and local ecological knowledge can provide information and help adjust our references of changes in the environment. Also, the combination of different types of data can indicate a fisheries trend that would be undetectable when evaluated separately. Here we investigated changes in fisher’s perceptions regarding overexploited and new target species in artisanal fisheries in a secular fishing village of the subtropical, southeastern Brazilian coast. We identified temporal changes in landings and in the mean trophic level (MTL) of high trophic level species (≥ 3.5 and >4) over 16 years. Fishers’ knowledge revealed shifts in perception associated with years of fishing practice. More experienced fishers recognized a greater number of overexploited and new target species than fishers in the beginning of their careers. Landing data has revealed declining trends of 72% for five mesopredators species. Due to the overfishing of mesopredators, there was a shift in target species, towards fish that were previously discarded. Temporal changes in landings and in the MTL metric are concordant with previous reports on the overexploitation of species caught by local fishers. Our work reveals that multiple sources of information can be combined to establish historical baselines and improve the detection of change in marine ecosystems.

In the last decades, a number of studies based on historical records revealed the diversity loss in the oceans and human-induced changes to marine ecosystems. These studies have improved our understanding of the human impacts in the oceans. They also drew attention to the shifting baseline syndrome and the importance of assessing appropriate sources of data in order to build the most reliable environmental baseline. Here we amassed information from artisanal fishermen's local ecological knowledge, fisheries landing data and underwater visual census to assess the decline of fish species in Southeastern Brazil. Interviews with 214 fishermen from line, beach seine and spearfishing revealed a sharp decline in abundance of the bluefish Pomatomus saltatrix, the groupers Epinephelus marginatus, Mycteroperca acutirostris, M. bonaci and M. microlepis, and large parrotfishes in the past six decades. Fisheries landing data from a 16-year period support the decline of bluefish as pointed by fishermen's local knowledge, while underwater visual census campaigns show reductions in groupers' abundance and a sharp population decline of the Brazilian endemic parrotfish Scarus trispinosus. Despite the marked decline of these fisheries, younger and less experienced fishermen recognized fewer species as overexploited and fishing sites as depleted than older and more experienced fishermen, indicating the occurrence of the shifting baseline syndrome. Here we show both the decline of multigear fisheries catches - combining anecdotal and scientific data - as well as changes in environmental perceptions over generations of fishermen. Managing ocean resources requires looking into the past, and into traditional knowledge, bringing historical baselines to the present and improving public awareness.

Anthropogenic impacts on tropical and subtropical coastal environments are increasing at an alarming rate, compromising ecosystem functions, structures and services. Understanding the scale of marine population decline and diversity loss requires a long-term perspective that incorporates information from a range of sources. The Southern Atlantic Ocean represents a major gap in our understanding of pre-industrial marine species composition. Here we begin to fill this gap by performing an extensive review of the published data on Middle and Late Holocene marine fish remains along the southern coast of Brazil. This region preserves archaeological sites that are unique archives of past socio-ecological systems and pre-European biological diversity. We assessed snapshots of species compositions and relative abundances spanning the last 9500 years, and modelled differences in species’ functional traits between archaeological and modern fisheries. We found evidence for both generalist and specialist fishing practices in pre-European times, with large body size and body mass caught regularly over hundreds of years. Comparison with modern catches revealed a significant decline in these functional traits, possibly associated with overfishing and escalating human impacts in recent times.

Marginal reefs sustain coral assemblages under conditions considered suboptimal for most corals, resulting in low coral abundance. These reefs are inhabited by numerous fishes with a generally unknown degree of association with corals that might lead to the assumption that corals play minor roles in determining fish occurrence, when corals could be actually sustaining diverse and resilient assemblages. Using site-occupancy models fitted to data of 113 reef fish species of different life stages (adults and juveniles) from 36 reefs distributed across the Southwestern Atlantic (0.87–27.6°S) we first assessed fish assemblage’s response to coral and turf algal cover, and identified coral-associated fish. Then, we simulated the loss of coral-associated fishes and contrasted it with random losses, providing inferences on the resilience of fish assemblage’s functional trait space to species loss. The entire fish assemblage responded more positively to coral than to turf algae, with 42 (37%) species being identified as coral-associated fish. The simulated loss of coral-associated fish reduced up to 5% the functional trait space and was not different from the random loss. These results reveal that marginal reefs of Southwestern Atlantic reefs host resilient fish assemblages that might preserve fundamental ecological functions and ecosystem services even with coral declines.

Taxonomic nestedness, the degree to which the taxonomic composition of species-poor assemblages represents a subset of richer sites, commonly occurs in habitat fragments and islands differing in size and isolation from a source pool. However, species are not ecologically equivalent and the extent to which nestedness is observed in terms of functional trait composition of assemblages still remains poorly known. Here, using an extensive database on the functional traits and the distributions of 6316 tropical reef fish species across 169 sites, we assessed the levels of taxonomical vs functional nestedness of reef fish assemblages at the global scale. Functional nestedness was considerably more common than taxonomic nestedness, and generally associated with geographical isolation, where nested subsets are gradually more isolated from surrounding reef areas and from the center of biodiversity. Because a nested pattern in functional composition implies that certain combinations of traits may be represented by few species, we identified these groups of low redundancy that include large herbivoredetritivores and omnivores, small piscivores, and macro-algal herbivores. The identified patterns of nestedness may be an outcome of the interaction between species dispersal capabilities, resource requirements, and gradients of isolation among habitats. The importance of isolation in generating the observed pattern of functional nestedness within biogeographic regions may indicate that disturbance in depauperate and isolated sites can have disproportionate effects on the functional structure of their reef fish assemblages.

Abiotic and biotic factors are known drivers that modulate community assembly from a regional species pool. Recent evidence has highlighted the intrinsic role of phylogenetic history on communities' response to the environment. Understanding its exact role poses a challenge because community assembly is embedded in a spatio‐temporal context where dispersal capabilities and biotic interactions may also determine species niches, especially in isolated oceanic islands. We unravelled how reef fish abundances from four oceanic islands in the southwestern Atlantic responded to environmental variability through seven years considering their phylogenetic history, functional traits and species co‐occurrence patterns. Species response to environmental variation was assessed through a multivariate hierarchical generalized linear mixed model that allows the inclusion of spatio‐temporal random effects, fitted with Bayesian inference. We found a strong phylogenetic signal (0.98) and a relatively low variance in abundance explained by functional traits, from around 30% in spring to 33% in summer, based on a posterior probability > 0.9. The most important environmental factor was surface chlorophyll‐a concentration, a proxy for primary productivity, explaining up to 23% of abundance variance. The global spatial and temporal effects on abundance were also low, with a maximum of 18% for sampling sites in spring. Our study offers a synthesis of the influence of complex phylogenetic history and geographical isolation on reef fish species niches in isolated oceanic islands, gaining new insights into how assembly processes have shaped these isolated communities.

Aim Marine vertebrates play key functional roles on reef ecosystems. Despite their phylogenetic distance, different vertebrate lineages could play similar functions on reefs, which has been overlooked by current research on marine functional biogeography. We provide the first comprehensive assessment of the functional structure and inventory of ecosystem functions delivered by 224 vertebrates—marine mammals, sea turtles, sharks, rays and bony fish—in Atlantic Ocean reefs. Location Atlantic Ocean reefs. Methods We compiled six species‐level traits and investigated geographical patterns of functional richness (FRic), functional uniqueness (FUn) and specialization (FSpe) in 83 assemblages. Additionally, we simulate the effects of marine vertebrate species’ extinction on functional diversity metrics. Results Sharks, rays and bony fish species had the highest overlap in functional space (30.94%), while turtles overlapped mainly with bony fishes (1.76%). The functional structure of vertebrate assemblages is not homogeneous across the Atlantic. While functional richness peaks in the Caribbean (a “functional hotspot”), this region depicts low‐to‐intermediate functional uniqueness and functional specialization levels. Despite the large proportion of threatened top predator species (53.1%), mainly large‐bodied sharks, it is the loss of mesopredator species that will severely impact (up to 94% of functional loss) the functional space of vertebrate assemblages in Atlantic Ocean reefs. Main conclusions Our study reveals that functional richness patterns of vertebrate assemblages differ across Atlantic Ocean reefs. Despite the low values of functional uniqueness and specialization in some reef assemblages, reef functioning can still be compromised due to species’ extinctions. The impact of mesopredators’ loss over the functional structure of vertebrate assemblages is worrisome since this group holds a considerable proportion of threatened species (20.1%) and is next in line considering the anthropogenic impacts over high trophic level species.

Aim: To present an updated database of fish species recorded on south-western Atlantic reef environments and to explore the ecological drivers of the structure, the latitudinal gradient of biodiversity and the centre of endemism in this peripheral province. Location: South-western Atlantic (SWA): Brazilian and Argentinian Provinces. Methods: A database composed of 733 fish species along 23 locations in the SWA (00°55' N to 43°00' S) was compiled based on primary data, literature and museum records. Cluster and beta diversity analyses were carried out to evaluate faunal overlaps among locations and subprovinces. \"Target-area-distance effect\" and \"stepping stones dispersal\" hypotheses for assemblage composition were tested through Mantel tests. Relationships between the distribution patterns and ecological traits of reef fish species were investigated through generalized linear mixed-effect models. Results: Out of the 733 fish species, 405 are SWA resident reef fishes, of which 111 (27%) are endemics and 78 are threatened with extinction. Cluster analysis detected six subprovinces in the SWA structured following the target-area-distance model, and with no evidence for a latitudinal gradient in diversity. The greatest overall richness and endemic species richness were found in the east-south-eastern region. Depth range, habitat use and body size were the main drivers of SWA reef fish assemblage structure. Main conclusions: The Brazilian and Argentinian coasts constitute different provinces structured by oceanographic barriers and environmental filters. Similarities among oceanic islands indicate connectivity driven by stochastic and ecological factors. Species richness and endemism indicate that peripheral provinces may also bear centres of origin and biodiversity, patterns driven by parapatric/ecological speciation and the overlap between tropical and subtropical reef fish species. Ecological drivers of reef fish distribution, such as habitat specialization and body size, support hypotheses of speciation in the periphery. New approaches for spatial planning, marine protected areas and off-reserve marine management are essential for the conservation and sustainability of SWA reef fishes.

Reef fisheries are multispecific and employ a variety of fishing gears across marine environments, even in remote areas. This intricate and multifaceted nature of reef fisheries is often overlooked in management strategies, leading to global management failures. In Brazil, information about reef fisheries is often scarce and scattered. This stems from inadequate policies and an unrecognized societal value of reef fisheries. Here, we combine nationwide reef fish landing data (1950–2015) with an extensive literature review on Brazilian reef fisheries. We explore temporal and spatial patterns in total landings, species traits, functional diversity and composition to understand the current scenario, identify drivers of change and highlight information gaps. Brazilian reef fisheries rapidly increased in landing volume, number of targeted species and exploited traits in the 1980’s, despite mainly targeting carnivorous fish (groupers, snappers, jacks and trevallies). Exploited functional space increased over time, mainly due to the incorporation of smaller and lower-trophic level species that gradually were added to the pool of fished species. Local and international markets have been the main drivers behind these patterns, while subsistence fishing is marginal. Lack of proper management and enforcement of existing regulations have led to population declines, dwindling total catches since the early 2000’s, and numerous threatened species. Artisanal fishing accounts for the majority of catches, raising concern on the social impacts of degraded reef fisheries. We highlight the urgent need for adequate fishing statistics, and the use/application of science-based management and policy actions to secure productive fisheries and healthy reef ecosystems in Brazil.

Ecosystem services (ES) embrace contributions of nature to human livelihood and well-being. Reef environments provide a range of ES with direct and indirect contributions to people. However, the health of reef environments is declining globally due to local and large-scale threats, affecting ES delivery in different ways. Mapping scientific knowledge and identifying research gaps on reefs’ ES is critical to guide their management and conservation. We conducted a systematic assessment of peer-reviewed articles published between 2007 and 2022 to build an overview of ES research on reef environments. We analyzed the geographical distribution, reef types, approaches used to assess ES, and the potential drivers of change in ES delivery reported across these studies. Based on 115 articles, our results revealed that coral and oyster reefs are the most studied reef ecosystems. Cultural ES (e.g., subcategories recreation and tourism) was the most studied ES in high-income countries, while regulating and maintenance ES (e.g., subcategory life cycle maintenance) prevailed in low and middle-income countries. Research efforts on reef ES are biased toward the Global North, mainly North America and Oceania. Studies predominantly used observational approaches to assess ES, with a marked increase in the number of studies using statistical modeling during 2021 and 2022. The scale of studies was mostly local and regional, and the studies addressed mainly one or two subcategories of reefs’ ES. Overexploitation, reef degradation, and pollution were the most commonly cited drivers affecting the delivery of provisioning, regulating and maintenance, and cultural ES. With increasing threats to reef environments, the growing demand for assessing the contributions to humans provided by reefs will benefit the projections on how these ES will be impacted by anthropogenic pressures. The incorporation of multiple and synergistic ecosystem mechanisms is paramount to providing a comprehensive ES assessment, and improving the understanding of functions, services, and benefits.