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4,151
result(s) for
"Benjamin, David C."
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Inflamed neutrophils sequestered at entrapped tumor cells via chemotactic confinement promote tumor cell extravasation
by
Chen, Michelle B.
,
Benjamin, David C.
,
Hajal, Cynthia
in
Animals
,
Animals, Genetically Modified
,
Applied Biological Sciences
2018
Systemic inflammation occurring around the course of tumor progression and treatment are often correlatedwith adverse oncological outcomes. As such, it is suspected that neutrophils, the first line of defense against infection, may play important roles in linking inflammation and metastatic seeding. To decipher the dynamic roles of inflamed neutrophils during hematogenous dissemination, we employ a multiplexed microfluidic model of the human microvasculature enabling physiologically relevant transport of circulating cells combined with real-time, high spatial resolution observation of heterotypic cell–cell interactions. LPS-stimulated neutrophils (PMNs) and tumor cells (TCs) form heterotypic aggregates under flow, and arrest due to both mechanical trapping and neutrophil–endothelial adhesions. Surprisingly, PMNs are not static following aggregation, but exhibit a confined migration pattern near TC–PMN clusters. We discover that PMNs are chemotactically confined by self-secreted IL-8 and tumor-derived CXCL-1, which are immobilized by the endothelial glycocalyx. This results in significant neutrophil sequestration with arrested tumor cells, leading to the spatial localization of neutrophil-derived IL-8, which also contributes to increasing the extravasation potential of adjacent tumor cells through modulation of the endothelial barrier. Strikingly similar migration patterns and extravasation behaviors were also observed in an in vivo zebrafish model upon PMN–tumor cell coinjection into the embryo vasculature. These insights into the temporal dynamics of intravascular tumor–PMN interactions elucidate the mechanisms through which inflamed neutrophils can exert proextravasation effects at the distant metastatic site.
Journal Article
Intravital imaging of metastasis in adult Zebrafish
2017
Background
Metastasis is a major clinical problem whose biology is not yet fully understood. This lack of understanding is especially true for the events at the metastatic site, which include arrest, extravasation, and growth into macrometastases. Intravital imaging is a powerful technique that has shown great promise in increasing our understanding of these events. To date, most intravital imaging studies have been performed in mice, which has limited its adoption. Zebrafish are also a common system for the intravital imaging of metastasis. However, as imaging in embryos is technically simpler, relatively few studies have used adult zebrafish to study metastasis and none have followed individual cells at the metastatic site over time. The aim of this study was to demonstrate that adult
casper
zebrafish offer a convenient model system for performing intravital imaging of the metastatic site over time with single-cell resolution.
Methods
ZMEL1 zebrafish melanoma cells were injected into 6 to 10-week-old
casper
fish using an intravenous injection protocol. Because
casper
fish are transparent even as adults, they could be imaged without surgical intervention. Individual cells were followed over the course of 2 weeks as they arrested, extravasated, and formed macroscopic metastases.
Results
Our injection method reliably delivered cells into circulation and led to the formation of tumors in multiple organs. Cells in the skin and sub-dermal muscle could be imaged at high resolution over 2 weeks using confocal microscopy. Arrest was visualized and determined to be primarily due to size restriction. Following arrest, extravasation was seen to occur between 1 and 6 days post-injection. Once outside of the vasculature, cells were observed migrating as well as forming protrusions.
Conclusions
Casper
fish are a useful model for studying the events at the metastatic site using intravital imaging. The protocols described in this study are relatively simple. Combined with the reasonably low cost of zebrafish, they offer to increase access to intravital imaging.
Journal Article
Korean Pop Culture beyond Asia
2024
Showcases the dynamism of cross-cultural engagement with
Korean media Korean media has exploded in popularity
across the globe in the past decade: BTS and other K-pop groups
have packed stadiums, Parasite garnered record-breaking
critical success, The Masked Singer and Single's
Inferno became viral TV hits, and multiday KCON fan events
have highlighted not only media but Korean food, cosmetics, and
fashion. Exploring how fans from different cultural and racial
backgrounds engage with Korean media in local and individual
contexts, this edited collection reveals complex transcultural
affinities, conflicts, and negotiations. The essays delve into the
ways people create meaning from, and shape affinity to, Korean
television and music. The book also explores Korean popular
culture's influence on audiences' imaginative play, desires, and
fantasies, critically examining topics such as TikTok as a space of
Asian fetishization, Black YouTubers' K-pop reaction videos, the
perception of Korean men in opposition to European hegemonic
masculinity, and Middle Eastern fans' responses to appropriation in
K-pop. Throughout, the contributors provide perceptive analyses
that reveal what the interplay of race and Korean entertainment
tells us about the complex nature of transnational fandom.
Minimally invasive local therapies for liver cancer
by
David Li Josephine Kang Benjamin J. Golas Vincent W. Yeung David C. Madoff
in
Algorithms
,
Cancer therapies
,
Electroporation
2014
Primary and metastatic liver tumors are an increasing global health problem, with hepatocellular carcinoma (HCC) now being the third leading cause of cancer-related mortality worldwide. Systemic treatment options for HCC remain limited, with Sorafenib as the only prospectively validated agent shown to increase overall survival. Surgical resection and/or transplantation, locally ablative therapies and regional or locoregional therapies have filled the gap in liver tumor treatments, providing improved survival outcomes for both primary and metastatic tumors. Minimally invasive local therapies have an increasing role in the treatment of both primary and metastatic liver tumors. For patients with low volume disease, these therapies have now been established into consensus practice guidelines. This review highlights technical aspects and outcomes of commonly utilized, minimally invasive local therapies including laparoscopic liver resection (LLR), radiofrequency ablation (RFA), microwave ablation (MWA), high-intensity focused ultrasound (HIFU), irreversible electroporation (IRE), and stereotactic body radiation therapy (SBRT). In addition, the role of combination treatment strategies utilizing these minimally invasive techniques is reviewed.
Journal Article
Sequence Polymorphisms and Antibody Binding to the Group 2 Dust Mite Allergens
by
Smith, Wendy A.
,
Chapman, Martin D.
,
Thomas, Wayne R.
in
Allergens
,
Allergens - genetics
,
Allergens - immunology
2001
Background: The group 2 allergens Der p 2, Der f 2 and Eur m 2 are 14-kD proteins with >80% sequence identity. Isoforms within each genus have been identified which differ by 3–4 amino acids. The aim of this study was to investigate the importance of these substitutions to antibody binding. Methods: Recombinant allergens were expressed and purified from Escherichia coli. ELISA and skin testing were used to evaluate antibody binding. Molecular modeling of the tertiary structure was preformed to examine the location of substitutions. Results: The three Der f 2 isoforms and two of three of the Der p 2 isoforms reacted with all monoclonal antibodies (mAb). Der p 2.0101, the isoform with aspartate at position 114, bound all mAb except 1D8. Substitution of asparagine for aspartate restored binding of rDer p 2.0101 to mAb 1D8 and increased the correlation coefficient for IgE binding from 0.72 to 0.77. The three Der p 2 isoforms showed comparable skin test reactivity to nDer p 2 and commercial extract. rEur m 2.0101 bound to all mAb except 7A1 and when compared with rDer p 2 for IgE binding, r 2 = of 0.58 (n = 72). Lep d 2 did not react with mAb or with Dermatophagoides spp. allergic sera. Modeling revealed that Eur m 2, Lep d 2 and Tyr p 2 retain the tertiary fold of Der p 2 and the substitutions are on the surface. Conclusions: mAb could distinguish isoform substitutions. IgE binding showed a good correlation among all isoforms, thus the recombinant allergens are useful for diagnosis.
Journal Article
The High-Resolution Rapid Refresh (HRRR): An Hourly Updating Convection-Allowing Forecast Model. Part I: Motivation and System Description
by
Dowell, David C.
,
Blake, Benjamin T.
,
Ladwig, Terra
in
Alternative energy sources
,
Aviation
,
Boundary conditions
2022
The High-Resolution Rapid Refresh (HRRR) is a convection-allowing implementation of the Advanced Research version of the Weather Research and Forecasting (WRF-ARW) Model with hourly data assimilation that covers the conterminous United States and Alaska and runs in real time at the NOAA/National Centers for Environmental Prediction (NCEP). Implemented operationally at NOAA/NCEP in 2014, the HRRR features 3-km horizontal grid spacing and frequent forecasts (hourly for CONUS and 3-hourly for Alaska). HRRR initialization is designed for optimal short-range forecast skill with a particular focus on the evolution of precipitating systems. Key components of the initialization are radar-reflectivity data assimilation, hybrid ensemble-variational assimilation of conventional weather observations, and a cloud analysis to initialize stratiform cloud layers. From this initial state, HRRR forecasts are produced out to 18 h every hour, and out to 48 h every 6 h, with boundary conditions provided by the Rapid Refresh system. Between 2014 and 2020, HRRR development was focused on reducing model bias errors and improving forecast realism and accuracy. Improved representation of the planetary boundary layer, subgrid-scale clouds, and land surface contributed extensively to overall HRRR improvements. The final version of the HRRR (HRRRv4), implemented in late 2020, also features hybrid data assimilation using flow-dependent covariances from a 3-km, 36-member ensemble (“HRRRDAS”) with explicit convective storms. HRRRv4 also includes prediction of wildfire smoke plumes. The HRRR provides a baseline capability for evaluating NOAA’s next-generation Rapid Refresh Forecast System, now under development.
Journal Article
Identification of SARS-CoV-2 inhibitors using lung and colonic organoids
2021
There is an urgent need to create novel models using human disease-relevant cells to study severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) biology and to facilitate drug screening. Here, as SARS-CoV-2 primarily infects the respiratory tract, we developed a lung organoid model using human pluripotent stem cells (hPSC-LOs). The hPSC-LOs (particularly alveolar type-II-like cells) are permissive to SARS-CoV-2 infection, and showed robust induction of chemokines following SARS-CoV-2 infection, similar to what is seen in patients with COVID-19. Nearly 25% of these patients also have gastrointestinal manifestations, which are associated with worse COVID-19 outcomes
1
. We therefore also generated complementary hPSC-derived colonic organoids (hPSC-COs) to explore the response of colonic cells to SARS-CoV-2 infection. We found that multiple colonic cell types, especially enterocytes, express ACE2 and are permissive to SARS-CoV-2 infection. Using hPSC-LOs, we performed a high-throughput screen of drugs approved by the FDA (US Food and Drug Administration) and identified entry inhibitors of SARS-CoV-2, including imatinib, mycophenolic acid and quinacrine dihydrochloride. Treatment at physiologically relevant levels of these drugs significantly inhibited SARS-CoV-2 infection of both hPSC-LOs and hPSC-COs. Together, these data demonstrate that hPSC-LOs and hPSC-COs infected by SARS-CoV-2 can serve as disease models to study SARS-CoV-2 infection and provide a valuable resource for drug screening to identify candidate COVID-19 therapeutics.
The use of lung and colonic organoid systems to assess the susceptibility of lung and gut cells to SARS-CoV-2 and to screen FDA-approved drugs that have antiviral activity against SARS-CoV-2 is demonstrated.
Journal Article
Inflammation in acquired hydrocephalus: pathogenic mechanisms and therapeutic targets
2020
Hydrocephalus is the most common neurosurgical disorder worldwide and is characterized by enlargement of the cerebrospinal fluid (CSF)-filled brain ventricles resulting from failed CSF homeostasis. Since the 1840s, physicians have observed inflammation in the brain and the CSF spaces in both posthaemorrhagic hydrocephalus (PHH) and postinfectious hydrocephalus (PIH). Reparative inflammation is an important protective response that eliminates foreign organisms, damaged cells and physical irritants; however, inappropriately triggered or sustained inflammation can respectively initiate or propagate disease. Recent data have begun to uncover the molecular mechanisms by which inflammation — driven by Toll-like receptor 4-regulated cytokines, immune cells and signalling pathways — contributes to the pathogenesis of hydrocephalus. We propose that therapeutic approaches that target inflammatory mediators in both PHH and PIH could address the multiple drivers of disease, including choroid plexus CSF hypersecretion, ependymal denudation, and damage and scarring of intraventricular and parenchymal (glia–lymphatic) CSF pathways. Here, we review the evidence for a prominent role of inflammation in the pathogenic mechanism of PHH and PIH and highlight promising targets for therapeutic intervention. Focusing research efforts on inflammation could shift our view of hydrocephalus from that of a lifelong neurosurgical disorder to that of a preventable neuroinflammatory condition.In this Review, Karimy et al. discuss the mechanisms by which inflammation can contribute to the pathogenesis of acquired hydrocephalus and highlight targets for therapeutic intervention.
Journal Article
Pervasive Sharing of Genetic Effects in Autoimmune Disease
by
Voight, Benjamin F.
,
Klareskog, Lars
,
Wijmenga, Cisca
in
Autoimmune diseases
,
Autoimmune Diseases - genetics
,
Biology
2011
Genome-wide association (GWA) studies have identified numerous, replicable, genetic associations between common single nucleotide polymorphisms (SNPs) and risk of common autoimmune and inflammatory (immune-mediated) diseases, some of which are shared between two diseases. Along with epidemiological and clinical evidence, this suggests that some genetic risk factors may be shared across diseases-as is the case with alleles in the Major Histocompatibility Locus. In this work we evaluate the extent of this sharing for 107 immune disease-risk SNPs in seven diseases: celiac disease, Crohn's disease, multiple sclerosis, psoriasis, rheumatoid arthritis, systemic lupus erythematosus, and type 1 diabetes. We have developed a novel statistic for Cross Phenotype Meta-Analysis (CPMA) which detects association of a SNP to multiple, but not necessarily all, phenotypes. With it, we find evidence that 47/107 (44%) immune-mediated disease risk SNPs are associated to multiple-but not all-immune-mediated diseases (SNP-wise P(CPMA)<0.01). We also show that distinct groups of interacting proteins are encoded near SNPs which predispose to the same subsets of diseases; we propose these as the mechanistic basis of shared disease risk. We are thus able to leverage genetic data across diseases to construct biological hypotheses about the underlying mechanism of pathogenesis.
Journal Article
CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer
2017
CIViC is an expert-crowdsourced knowledgebase for Clinical Interpretation of Variants in Cancer describing the therapeutic, prognostic, diagnostic and predisposing relevance of inherited and somatic variants of all types. CIViC is committed to open-source code, open-access content, public application programming interfaces (APIs) and provenance of supporting evidence to allow for the transparent creation of current and accurate variant interpretations for use in cancer precision medicine.
Journal Article