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A major challenge in predicting Earth's future climate state is to understand feedbacks that alter greenhouse-gas forcing. Here we synthesize field data from arctic Alaska, showing that terrestrial changes in summer albedo contribute substantially to recent high-latitude warming trends. Pronounced terrestrial summer warming in arctic Alaska correlates with a lengthening of the snow-free season that has increased atmospheric heating locally by about 3 watts per square meter per decade (similar in magnitude to the regional heating expected over multiple decades from a doubling of atmospheric CO₂). The continuation of current trends in shrub and tree expansion could further amplify this atmospheric heating by two to seven times.

The relative complexity of the mechanisms underlying savanna ecosystem dynamics, in comparison to other biomes such as temperate and tropical forests, challenges the representation of such dynamics in ecosystem and Earth system models. A realistic representation of processes governing carbon allocation and phenology for the two defining elements of savanna vegetation (namely trees and grasses) may be a key to understanding variations in tree–grass partitioning in time and space across the savanna biome worldwide. Here we present a new approach for modelling coupled phenology and carbon allocation, applied to competing tree and grass plant functional types. The approach accounts for a temporal shift between assimilation and growth, mediated by a labile carbohydrate store. This is combined with a method to maximize long-term net primary production (NPP) by optimally partitioning plant growth between fine roots and (leaves + stem). The computational efficiency of the analytic method used here allows it to be uniquely and readily applied at regional scale, as required, for example, within the framework of a global biogeochemical model.We demonstrate the approach by encoding it in a new simple carbon–water cycle model that we call HAVANA (Hydrology and Vegetation-dynamics Algorithm for Northern Australia), coupled to the existing POP (Population Orders Physiology) model for tree demography and disturbance-mediated heterogeneity. HAVANA-POP is calibrated using monthly remotely sensed fraction of absorbed photosynthetically active radiation (fPAR) and eddy-covariance-based estimates of carbon and water fluxes at five tower sites along the North Australian Tropical Transect (NATT), which is characterized by large gradients in rainfall and wildfire disturbance. The calibrated model replicates observed gradients of fPAR, tree leaf area index, basal area, and foliage projective cover along the NATT. The model behaviour emerges from complex feedbacks between the plant physiology and vegetation dynamics, mediated by shifting above- versus below-ground resources, and not from imposed hypotheses about the controls on tree–grass co-existence. Results support the hypothesis that resource limitation is a stronger determinant of tree cover than disturbance in Australian savannas.

North Australian tropical savanna accounts for 12% of the world's total savanna land cover. Accordingly, understanding processes that govern carbon, water and energy exchange within this biome is critical to global carbon and water budgeting. Climate and disturbances drive ecosystem carbon dynamics. Savanna ecosystems of the coastal and sub-coastal of north Australia experience a unique combination of climatic extremes and are in a state of near constant disturbance from fire events (1 in 3 years), storms resulting in windthrow (1 in 5-10 years) and mega-cyclones (1 in 500-1000 years). Critically, these disturbances occur over large areas creating a spatial and temporal mosaic of carbon sources and sinks. We quantify the impact on gross primary productivity (GPP) and fire occurrence from a tropical mega-cyclone, tropical Cyclone Monica (TC Monica), which affected 10 400 km2 of savanna across north Australia, resulting in the mortality and severe structural damage to ∼140 million trees. We estimate a net carbon equivalent emission of 43 Tg of CO2-e using the moderate resolution imaging spectroradiometer (MODIS) GPP (MOD17A2) to quantify spatial and temporal patterns pre- and post-TC Monica. GPP was suppressed for four years after the event, equivalent to a loss of GPP of 0.5 Tg C over this period. On-ground fuel loads were estimated to potentially release 51.2 Mt CO2-e, equivalent to ∼10% of Australia's accountable greenhouse gas emissions. We present a simple carbon balance to examine the relative importance of frequency versus impact for a number of key disturbance processes such as fire, termite consumption and intense but infrequent mega-cyclones. Our estimates suggested that fire and termite consumption had a larger impact on Net Biome Productivity than infrequent mega-cyclones. We demonstrate the importance of understanding how climate variability and disturbance impacts savanna dynamics in the context of the increasing interest in using savanna landscapes for enhanced carbon sinks in emission offset schemes.

Savanna ecosystems are subjected to accelerating land use change as human demand for food and forest products increases. Land use change has been shown to both increase and decrease greenhouse gas fluxes from savannas and considerable uncertainty exists about the non-CO2 fluxes from the soil. We measured methane (CH4), nitrous oxide (N2O) and carbon dioxide (CO2) over a complete wet-dry seasonal cycle at three replicate sites of each of three land uses: savanna, young pasture and old pasture (converted from savanna 5–7 and 25–30 yr ago, respectively) in the Douglas Daly region of Northern Australia. The effect of break of season rains at the end of the dry season was investigated with two irrigation experiments. Land use change from savanna to pasture increased net greenhouse gas fluxes from the soil. Pasture sites were a weaker sink for CH4 than savanna sites and, under wet conditions, old pastures turned from being sinks to a significant source of CH4. Nitrous oxide emissions were generally very low, in the range of 0 to 5 μg N2O-N m−2 h−1, and under dry conditions soil uptake of N2O was apparent. Break of season rains produced a small, short lived pulse of N2O up to 20 μg N2O-N m−2 h−1, most evident in pasture soil. Annual cumulative soil CO2 fluxes increased after clearing, with savanna (14.6 t CO2-C ha−1 yr−1) having the lowest fluxes compared to old pasture (18.5 t CO2-C ha−1 yr−1) and young pasture (20.0 t CO2-C ha−1 yr−1). Clearing savanna increased soil-based greenhouse gas emissions from 53 to ∼ 70 t CO2-equivalents, a 30% increase dominated by an increase in soil CO2 emissions and shift from soil CH4 sink to source. Seasonal variation was clearly driven by soil water content, supporting the emerging view that soil water content is a more important driver of soil gas fluxes than soil temperature in tropical ecosystems where temperature varies little among seasons.

Aim For many endemic species with limited dispersal capacities, the relationship between landscape changes and species distributions is still unclear. We characterized the population structure of the endemic ringed salamander (Ambystoma annulatum) across its distribution in the Central Interior Highlands (CIH) of North America, an area of high species endemism, to infer the ecological and evolutionary history of the species. Methods We sampled 498 individuals across the species distribution and characterized the population genetic structure using nuclear microsatellite and mitochondrial DNA (mtDNA) markers. Results Ambystoma annulatum exist in two strongly supported nuclear genetic clusters across the CIH that correspond to a northern cluster that includes the Missouri Ozark populations and a southern cluster that includes the Arkansas and Oklahoma Ozarks and the Ouachita Mountains. Our demographic models estimated that these populations diverged approximately 2,700 years ago. Pairwise estimates of genetic differentiation at microsatellite and mtDNA markers indicated limited contemporary gene flow and suggest that genetic differentiation was primarily influenced by changes in the post‐Pleistocene landscape of the CIH. Main Conclusions Both the geologic history and post‐European settlement history of the CIH have influenced the population genetic structure of A. annulatum. The low mtDNA diversity suggests a retraction into and expansion out of refugial areas in the south‐central Ozarks, during temperature fluctuations of the Pleistocene and Holocene epochs. Similarly, the estimated divergence time for the two nuclear clusters corresponds to changes in the post‐Pleistocene landscape. More recently, decreased A. annulatum gene flow may be a result of increased habitat fragmentation and alteration post‐European settlement. We characterized the population structure of the endemic ringed salamander (Ambystoma annulatum) across its distribution in the Central Interior Highlands of North America, an area of high species endemism, to infer the ecological and evolutionary history of the species. Both the geologic history and post‐European settlement history of the CIH have influenced the population genetic structure of A. annulatum.

Mosses dominate the surface cover in high northern latitudes and have the potential to play a key role in modifying the thermal and hydrologic regime of Arctic soils. These modifications in turn feed back to influence surface energy exchanges and hence may affect regional climate. However, mosses are poorly represented in models of the land surface. In this study the NCAR Land Surface Model (LSM) was modified in two ways. First, additional soil texture types including mosses and lichens were added to more realistically represent northern soils. Second, the LSM was also modified so that a different soil texture type could be specified for each layer. Several experiments were performed using climate data from an Arctic tundra site in 1995. The model was run for a homogeneous loam soil column and then also for columns that included moss, lichen, peat, and sand. The addition of a surface layer of moss underlain by peat and loam had a substantial impact on modeled surface processes. First, moss acted as an insulative layer producing cooler summer temperatures (6.9°C lower at 0.5 m) and warmer winter temperatures (2.3°C higher at 0.5 m) when compared with a homogenous loam soil column. Second, a soil column with a moss surface had a greater surface infiltration, leading to greater storage of soil moisture in lower layers when compared with a homogeneous loam column. Last, moss modulated the surface energy exchanges by decreasing soil heat flux (57% in July) and increasing turbulent fluxes of heat (67% in July) and moisture (15% in July). Mosses were also more effective contributors to total latent heating than was a bare loam surface. These results suggest that the addition of moss and the ability to prescribe different soil textures for different soil layers result in a more plausible distribution of heat and water within the column and that these modifications should be incorporated into regional and global climate models.

Urban drainage infrastructure is generally designed to rapidly export stormwater away from the urban environment to minimize flood risk created by extensive impervious surface cover. This deficit is resolved by importing high-quality potable water for irrigation. However, cities and towns at times face water restrictions in response to drought and water scarcity. This can exacerbate heating and drying, and promote the development of unfavourable urban climates. The combination of excessive heating driven by urban development, low water availability and future climate change impacts could compromise human health and amenity for urban dwellers. This paper draws on existing literature to demonstrate the potential of Water Sensitive Urban Design (WSUD) to help improve outdoor human thermal comfort in urban areas and support Climate Sensitive Urban Design (CSUD) objectives within the Australian context. WSUD provides a mechanism for retaining water in the urban landscape through stormwater harvesting and reuse while also reducing urban temperatures through enhanced evapotranspiration and surface cooling. Research suggests that WSUD features are broadly capable of lowering temperatures and improving human thermal comfort, and when integrated with vegetation (especially trees) have potential to meet CSUD objectives. However, the degree of benefit (the intensity of cooling and improvements to human thermal comfort) depends on a multitude of factors including local environmental conditions, the design and placement of the systems, and the nature of the surrounding urban landscape. We suggest that WSUD can provide a source of water across Australian urban environments for landscape irrigation and soil moisture replenishment to maximize the urban climatic benefits of existing vegetation and green spaces. WSUD should be implemented strategically into the urban landscape, targeting areas of high heat exposure, with many distributed WSUD features at regular intervals to promote infiltration and evapotranspiration, and maintain tree health.

Measurement of the exchange of energy and mass between the surface and the atmospheric boundary-layer by the eddy covariance technique has undergone great change in the last 2 decades. Early studies of these exchanges were confined to brief field campaigns in carefully controlled conditions followed by months of data analysis. Current practice is to run tower-based eddy covariance systems continuously over several years due to the need for continuous monitoring as part of a global effort to develop local-, regional-, continental- and global-scale budgets of carbon, water and energy. Efficient methods of processing the increased quantities of data are needed to maximise the time available for analysis and interpretation. Standardised methods are needed to remove differences in data processing as possible contributors to observed spatial variability. Furthermore, public availability of these data sets assists with undertaking global research efforts. The OzFlux data path has been developed (i) to provide a standard set of quality control and post-processing tools across the network, thereby facilitating inter-site integration and spatial comparisons; (ii) to increase the time available to researchers for analysis and interpretation by reducing the time spent collecting and processing data; (iii) to propagate both data and metadata to the final product; and (iv) to facilitate the use of the OzFlux data by adopting a standard file format and making the data available from web-based portals. Discovery of the OzFlux data set is facilitated through incorporation in FLUXNET data syntheses and the publication of collection metadata via the RIF-CS format. This paper serves two purposes. The first is to describe the data sets, along with their quality control and post-processing, for the other papers of this Special Issue. The second is to provide an example of one solution to the data collection and curation challenges that are encountered by similar flux tower networks worldwide.

: Question: Current climate changes in the Alaskan Arctic, which are characterized by increases in temperature and length of growing season, could alter vegetation structure, especially through increases in shrub cover or the movement of treeline. These changes in vegetation structure have consequences for the climate system. What is the relationship between structural complexity and partitioning of surface energy along a gradient from tundra through shrub tundra to closed canopy forest? Location: Arctic tundra‐boreal forest transition in the Alaskan Arctic. Methods: Along this gradient of increasing canopy complexity, we measured key vegetation characteristics, including community composition, biomass, cover, height, leaf area index and stem area index. We relate these vegetation characteristics to albedo and the partitioning of net radiation into ground, latent, and sensible heating fluxes. Results: Canopy complexity increased along the sequence from tundra to forest due to the addition of new plant functional types. This led to non‐linear changes in biomass, cover, and height in the understory. The increased canopy complexity resulted in reduced ground heat fluxes, relatively conserved latent heat fluxes and increased sensible heat fluxes. The localized warming associated with increased sensible heating over more complex canopies may amplify regional warming, causing further vegetation change in the Alaskan Arctic.

Terrestrial plant productivity tends to increase under increasing but non-saturating photosynthetically active solar radiation when water, temperature and nutrients are not limiting. However, studies have shown that photosynthesis can also be higher under enhanced diffuse light despite a decrease in total irradiance. Clouds and atmospheric aerosols are two important variables that determine the total and proportion of diffuse light reaching the surface and thereby the rate of photosynthesis and carbon accumulation in plants. In addition to these factors, the response of plants to diffuse radiation is also dependant on plant characteristics such as functional types, leaf physiology, leaf area, leaf inclination, canopy structure and shape (i.e. clumping). Local environmental conditions (i.e. temperature, soil moisture, vapour pressure deficit, etc.) then modulate these plant responses. Changes in solar radiation as a consequence of clouds and aerosols thus can modify the carbon balance of terrestrial ecosystems. Therefore, understanding the role of solar radiation in terrestrial carbon processes has become one of the goals in terrestrial carbon cycle studies. It can help to identify the control and mechanisms of carbon processes and determines the geographical and temporal distribution of the major pools and fluxes in the global carbon cycle. Here we review the role of clouds and aerosols in partitioning solar radiation and their interactions with carbon processes of terrestrial plants. We also focus our review on vegetation characteristics that control the impact of radiation partitioning on vegetation carbon processes and the role of modelling approach to study this impact. We identify gaps in this field of research and further propose recommendations to bridge the gap.