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The decreasing costs of genome sequencing is creating a demand for scalable storage and processing tools and techniques to deal with the large amounts of generated data. Referential compression is one of these techniques, in which the similarity between the DNA of organisms of the same or an evolutionary close species is exploited to reduce the storage demands of genome sequences up to 700 times. The general idea is to store in the compressed file only the differences between the to-be-compressed and a well-known reference sequence. In this paper, we propose a method for improving the performance of referential compression by removing the most costly phase of the process, the complete reference indexing. Our approach, called On-Demand Indexing (ODI) compresses human chromosomes five to ten times faster than other state-of-the-art tools (on average), while achieving similar compression ratios.

This paper considers the estimation of reliability and availability of intrusion-tolerant systems subject to non-detectable intrusions caused by stealth attacks. We observe that typical intrusion tolerance techniques may in certain circumstances worsen the dependability properties they were meant to improve. We model intrusions as a probabilistic effect of adversarial efforts and analyze different strategies of attack and rejuvenation. We compare several configurations of intrusion-tolerant replication and proactive rejuvenation, and varying mission times and expected times to node-intrusion. In doing so, we identify thresholds that distinguish between improvement and degradation of dependability, with a focus on security. We highlight the complementarity of replication and rejuvenation, showing improvements of resilience not attainable with any of the techniques alone, but possible when they are combined. We advocate the need for thorougher system models, by showing vulnerabilities arising from incomplete specifications.

A current trend in the web services community is to define coordination mechanisms to execute collaborative tasks involving multiple organizations. Following this tendency, in this paper the authors present a dependable (i.e., intrusion-tolerant) infrastructure for cooperative web services coordination that is based on the tuple space coordination model. This infrastructure provides decoupled communication and implements several security mechanisms that allow dependable coordination even in presence of malicious components. This work also investigates the costs related to the use of this infrastructure and possible web service applications that can benefit from it.

The decreasing costs of genome sequencing is creating a demand for scalable storage and processing tools and techniques to deal with the large amounts of generated data. Referential compression is one of these techniques, in which the similarity between the DNA of organisms of the same or an evolutionary close species is exploited to reduce the storage demands of genome sequences up to 700 times. The general idea is to store in the compressed file only the differences between the to-be-compressed and a well-known reference sequence. In this paper, we propose a method for improving the performance of referential compression by removing the most costly phase of the process, the complete reference indexing. Our approach, called On-Demand Indexing (ODI) compresses human chromosomes five to ten times faster than other state-of-the-art tools (on average), while achieving similar compression ratios.

Consensus stands as a fundamental building block for constructing reliable and fault-tolerant distributed services. The increasing demand for high-performance and scalable blockchain protocols has brought attention to solving consensus in scenarios where each participant joins the system knowing only a subset of participants. In such scenarios, the participants' initial knowledge about the existence of other participants can collectively be represented by a directed graph known as knowledge connectivity graph. The Byzantine Fault Tolerant Consensus with Unknown Participants (BFT-CUP) problem aims to solve consensus in those scenarios by identifying the necessary and sufficient conditions that the knowledge connectivity graphs must satisfy when a fault threshold is provided to all participants. This work extends BFT-CUP by eliminating the requirement to provide the fault threshold to the participants. We indeed address the problem of solving BFT consensus in settings where each participant initially knows a subset of participants, and although a fault threshold exists, no participant is provided with this information -- referred to as BFT Consensus with Unknown Participants and Fault Threshold (BFT-CUPFT). With this aim, we first demonstrate that the conditions for knowledge connectivity graphs identified by BFT-CUP are insufficient to solve BFT-CUPFT. Accordingly, we introduce a new type of knowledge connectivity graphs by determining the necessary and sufficient conditions they must satisfy to solve BFT-CUPFT. Furthermore, we design a protocol for solving BFT-CUPFT.

Knowledge sharing about emerging threats is crucial in the rapidly advancing field of cybersecurity and forms the foundation of Cyber Threat Intelligence (CTI). In this context, Large Language Models are becoming increasingly significant in the field of cybersecurity, presenting a wide range of opportunities. This study surveys the performance of ChatGPT, GPT4all, Dolly, Stanford Alpaca, Alpaca-LoRA, Falcon, and Vicuna chatbots in binary classification and Named Entity Recognition (NER) tasks performed using Open Source INTelligence (OSINT). We utilize well-established data collected in previous research from Twitter to assess the competitiveness of these chatbots when compared to specialized models trained for those tasks. In binary classification experiments, Chatbot GPT-4 as a commercial model achieved an acceptable F1 score of 0.94, and the open-source GPT4all model achieved an F1 score of 0.90. However, concerning cybersecurity entity recognition, all evaluated chatbots have limitations and are less effective. This study demonstrates the capability of chatbots for OSINT binary classification and shows that they require further improvement in NER to effectively replace specially trained models. Our results shed light on the limitations of the LLM chatbots when compared to specialized models, and can help researchers improve chatbots technology with the objective to reduce the required effort to integrate machine learning in OSINT-based CTI tools.

Byzantine Consensus is fundamental for building consistent and fault-tolerant distributed systems. In traditional quorum-based consensus protocols, quorums are defined using globally known assumptions shared among all participants. Motivated by decentralized applications on open networks, the Stellar blockchain relaxes these global assumptions by allowing each participant to define its quorums using local information. A similar model called Consensus with Unknown Participants (CUP) studies the minimal knowledge required to solve consensus in ad-hoc networks where each participant knows only a subset of other participants of the system. We prove that Stellar cannot solve consensus using the initial knowledge provided to participants in the CUP model, even though CUP can. We propose an oracle called sink detector that augments this knowledge, enabling Stellar participants to solve consensus.

The performance of distributed storage systems deployed on wide-area networks can be improved using weighted (majority) quorum systems instead of their regular variants due to the heterogeneous performance of the nodes. A significant limitation of weighted majority quorum systems lies in their dependence on static weights, which are inappropriate for systems subject to the dynamic nature of networked environments. To overcome this limitation, such quorum systems require mechanisms for reassigning weights over time according to the performance variations. We study the problem of node weight reassignment in asynchronous systems with a static set of servers and static fault threshold. We prove that solving such a problem is as hard as solving consensus, i.e., it cannot be implemented in asynchronous failure-prone distributed systems. This result is somewhat counter-intuitive, given the recent results showing that two related problems -- replica set reconfiguration and asset transfer -- can be solved in asynchronous systems. Inspired by these problems, we present two versions of the problem that contain restrictions on the weights of servers and the way they are reassigned. We propose a protocol to implement one of the restricted problems in asynchronous systems. As a case study, we construct a dynamic-weighted atomic storage based on such a protocol. We also discuss the relationship between weight reassignment and asset transfer problems and compare our dynamic-weighted atomic storage with reconfigurable atomic storage.

With upcoming blockchain infrastructures, world-spanning Byzantine consensus is getting practical and necessary. In geographically distributed systems, the pace at which consensus is achieved is limited by the heterogenous latencies of connections between replicas. If deployed on a wide-area network, consensus-based systems benefit from weighted replication, an approach that utilizes extra replicas and assigns higher voting power to well connected replicas. This enables more choice in quorum formation and replicas can leverage proportionally smaller quorums to advance, thus decreasing consensus latency. However, the system needs a solution to autonomously adjust to its environment if network conditions change or faults occur. We present Adaptive Wide-Area REplication (AWARE), a mechanism which improves the geographical scalability of consensus with nodes being widely spread across the world. Essentially, AWARE is an automated and dynamic voting weight tuning and leader positioning scheme, which supports the emergence of fast quorums in the system. It employs a reliable self-monitoring process and provides a prediction model seeking to minimize the system's consensus latency. In experiments using several AWS EC2 regions, AWARE dynamically optimizes consensus latency by self-reliantly finding a fast weight configuration yielding latency gains observed by clients located across the globe.