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37
result(s) for
"Boehm, Benedikt"
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Two-photon lithography for 3D magnetic nanostructure fabrication
by
Rarity, John
,
Hunt, Matthew
,
Giblin, Sean
in
Atomic/Molecular Structure and Spectra
,
Biomedicine
,
Biotechnology
2018
Ferromagnetic materials have been utilized as recording media in data storage devices for many decades. The confinement of a material to a two-dimensional plane is a significant bottleneck in achieving ultra-high recording densities, and this has led to the proposition of three-dimensional (3D) racetrack memories that utilize domain wall propagation along the nanowires. However, the fabrication of 3D magnetic nanostructures of complex geometries is highly challenging and is not easily achieved with standard lithography techniques. Here, we demonstrate a new approach to construct 3D magnetic nanostructures of complex geometries using a combination of two-photon lithography and electrochemical deposition. The magnetic properties are found to be intimately related to the 3D geometry of the structure, and magnetic imaging experiments provide evidence of domain wall pinning at the 3D nanostructured junction.
Journal Article
Combinations of Low-Frequency Genetic Variants Might Predispose to Familial Pancreatic Cancer
2021
Familial pancreatic cancer (FPC) is an established but rare inherited tumor syndrome that accounts for approximately 5% of pancreatic ductal adenocarcinoma (PDAC) cases. No major causative gene defect has yet been identified, but germline mutations in predisposition genes BRCA1/2, CDKN2A and PALB2 could be detected in 10–15% of analyzed families. Thus, the genetic basis of disease susceptibility in the majority of FPC families remains unknown. In an attempt to identify new candidate genes, we performed whole-genome sequencing on affected patients from 15 FPC families, without detecting BRCA1/2, CDKN2A or PALB2 mutations, using an Illumina based platform. Annotations from CADD, PolyPhen-2, SIFT, Mutation Taster and PROVEAN were used to assess the potential impact of a variant on the function of a gene. Variants that did not segregate with pancreatic disease in respective families were excluded. Potential predisposing candidate genes ATM, SUFU, DAB1, POLQ, FGFBP3, MAP3K3 and ACAD9 were identified in 7 of 15 families. All identified gene mutations segregated with pancreatic disease, but sometimes with incomplete penetrance. An analysis of up to 46 additional FPC families revealed that the identified gene mutations appeared to be unique in most cases, despite a potentially deleterious ACAD9 Ala326Thr germline variant, which occurred in 4 (8.7%) of 46 FPC families. Notably, affected PDAC patients within a family carried identical germline mutations in up to three different genes, e.g., DAB1, POLQ and FGFBP3. These results support the hypothesis that FPC is a highly heterogeneous polygenetic disease caused by low-frequency or rare variants.
Journal Article
StegExpose - A Tool for Detecting LSB Steganography
2014
Steganalysis tools play an important part in saving time and providing new angles of attack for forensic analysts. StegExpose is a solution designed for use in the real world, and is able to analyse images for LSB steganography in bulk using proven attacks in a time efficient manner. When steganalytic methods are combined intelligently, they are able generate even more accurate results. This is the prime focus of StegExpose.
Two-photon Lithography for 3D Magnetic Nanostructure Fabrication
2017
Ferromagnetic materials have been utilised as recording media within data storage devices for many decades. Confinement of the material to a two dimensional plane is a significant bottleneck in achieving ultra-high recording densities and this has led to the proposition of three dimensional (3D) racetrack memories that utilise domain wall propagation along nanowires. However, the fabrication of 3D magnetic nanostructures of complex geometry is highly challenging and not easily achievable with standard lithography techniques. Here, by using a combination of two-photon lithography and electrochemical deposition, we show a new approach to construct 3D magnetic nanostructures of complex geometry. The magnetic properties are found to be intimately related to the 3D geometry of the structure and magnetic imaging experiments provide evidence of domain wall pinning at a 3D nanostructured junction.
CT-like images based on T1 spoiled gradient-echo and ultra-short echo time MRI sequences for the assessment of vertebral fractures and degenerative bone changes of the spine
by
Schneider, Charlotte
,
Gersing, Alexandra S.
,
Kirschke, Jan S.
in
Accuracy
,
Agreements
,
Biomedical materials
2021
Objectives
To evaluate the performance of 3D T1w spoiled gradient-echo (T1SGRE) and ultra-short echo time (UTE) MRI sequences for the detection and assessment of vertebral fractures and degenerative bone changes compared with conventional CT.
Methods
Fractures (
n
= 44) and degenerative changes (
n
= 60 spinal segments) were evaluated in 30 patients (65 ± 14 years, 18 women) on CT and 3-T MRI, including CT-like images derived from T1SGRE and UTE. Two radiologists evaluated morphological features on both modalities: Genant and AO/Magerl classifications, anterior/posterior vertebral height, fracture age; disc height, neuroforaminal diameter, grades of spondylolisthesis, osteophytes, sclerosis, and facet joint degeneration. Diagnostic accuracy and agreement between MRI and CT and between radiologists were assessed using crosstabs, weighted κ, and intraclass correlation coefficients. Image quality was graded on a Likert scale.
Results
For fracture detection, sensitivity, specificity, and accuracy were 0.95, 0.98, and 0.97 for T1SGRE and 0.91, 0.96, and 0.95 for UTE. Agreement between T1SGRE and CT was substantial to excellent (e.g., Genant:
κ
, 0.92 [95% confidence interval, 0.83–1.00]; AO/Magerl:
κ
, 0.90 [0.76–1.00]; osteophytes:
κ
, 0.91 [0.82–1.00]; sclerosis:
κ
, 0.68 [0.48–0.88]; spondylolisthesis: ICCs, 0.99 [0.99–1.00]). Agreement between UTE and CT was lower, ranging from moderate (e.g., sclerosis:
κ
, 0.43 [0.26–0.60]) to excellent (spondylolisthesis: ICC, 0.99 [0.99–1.00]). Inter-reader agreement was substantial to excellent (0.52–1.00), respectively, for all parameters. Median image quality of T1SGRE was rated significantly higher than that of UTE (
p
< 0.001).
Conclusions
Morphologic assessment of bone pathologies of the spine using MRI was feasible and comparable to CT, with T1SGRE being more robust than UTE.
Key Points
• Vertebral fractures and degenerative bone changes can be assessed on CT-like MR images, with 3D T1w spoiled gradient-echo–based images showing a high diagnostic accuracy and agreement with CT.
• This could enable MRI to precisely assess bone morphology, and 3D T1SGRE MRI sequences may substitute additional spinal CT examinations in the future.
• Image quality and robustness of T1SGRE sequences are higher than those of UTE MRI for the assessment of bone structures.
Journal Article
Wnt secretion is required to maintain high levels of Wnt activity in colon cancer cells
by
Dubash, Taronish D.
,
Anchang, Benedikt
,
Ball, Claudia R.
in
631/67/1504/1885/1393
,
631/80/86
,
Adenocarcinoma - genetics
2013
Aberrant regulation of the Wnt/β-catenin pathway has an important role during the onset and progression of colorectal cancer, with over 90% of cases of sporadic colon cancer featuring mutations in APC or β-catenin. However, it has remained a point of controversy whether these mutations are sufficient to activate the pathway or require additional upstream signals. Here we show that colorectal tumours express elevated levels of Wnt3 and Evi/Wls/GPR177. We found that in colon cancer cells, even in the presence of mutations in APC or β-catenin, downstream signalling remains responsive to Wnt ligands and receptor proximal signalling. Furthermore, we demonstrate that truncated APC proteins bind β-catenin and key components of the destruction complex. These results indicate that cells with mutations in APC or β-catenin depend on Wnt ligands and their secretion for a sufficient level of β-catenin signalling, which potentially opens new avenues for therapeutic interventions by targeting Wnt secretion via Evi/Wls.
Activating mutations in the Wnt signalling pathway are associated with colon cancer. Here the authors show that tumour cells carrying mutations in APC and β-catenin are still regulated by Wnt ligands, suggesting that Wnt secretion and receptor signalling remains important to control downstream signalling.
Journal Article
On the importance of accurate pole and station coordinates for VLBI Intensive baselines
by
Schartner, Matthias
,
Böhm, Johannes
,
Soja, Benedikt
in
Accuracy
,
Algorithms
,
Earth and Environmental Science
2023
Very long baseline interferometry (VLBI) is a geodetic technique capable of deriving the complete set of Earth orientation parameters, including the highly variable Earth’s phase of rotation. This observable can be expressed through UT1–UTC, the difference between the Universal Time and the Coordinated Universal Time. The so-called
Intensive
sessions, or
Intensives
, are typically 1-h sessions between two to three stations that are observed daily with the primary goal of determining UT1–UTC with a short latency. In this publication, we examine the impact of erroneous a priori information on the UT1–UTC estimation with VLBI
Intensive
sessions in a systematic way and on a global scale. Our findings are based on a simulation study which is carried out on a regular
10
×
10
degree grid of artificial telescopes. In the simulations, realistic errors are introduced in the station coordinates, polar motion and nutation to get a global picture of the impact of these errors on the estimation of UT1–UTC. Our results reveal that in contrast to errors in the horizontal components of the station coordinates, an error in the station height only slightly affects the UT1–UTC estimate. North–south-oriented baselines are in general strongly affected by errors in the a priori information. In all cases, very short and very long baselines as well as baselines with a midpoint close to the equatorial plane are less robust. On the other hand, east–west-oriented baselines, except equatorial baselines, seem to be rather resistant against errors of these a priori values.
Journal Article
Diagnostic value of water-fat-separated images and CT-like susceptibility-weighted images extracted from a single ultrashort echo time sequence for the evaluation of vertebral fractures and degenerative changes of the spine
by
Weiss, Kilian
,
Gersing, Alexandra S.
,
Boehm, Christof
in
Bone imaging
,
Computed tomography
,
Confidence intervals
2023
Objectives
To evaluate the performance of single-echo Dixon water-fat imaging and computed tomography (CT)–like imaging based on a single ultrashort echo time (sUTE) MR sequence for imaging of vertebral fractures as well as degenerative bone changes of the spine in comparison to conventional CT and MR sequences.
Methods
Thirty patients with suspected acute vertebral fractures were examined using a 3-T MRI, including an sUTE sequence as well as short-tau inversion recovery (STIR) and T1-weighted sequences. During postprocessing, water-fat separation was performed by solving the smoothness-constrained inverse water-fat problem based on a single-complex UTE image. By removing the unwanted low-frequency phase terms, additional MR-based susceptibility-weighted-like (SW-like) images with CT-like contrast were created. Two radiologists evaluated semi-quantitative and quantitative features of fractures and degenerative changes independently and separately on CT and MR images.
Results
In total, all 58 fractures were accurately detected of whom 24 were correctly classified as acute fractures with an edema detected on the water-fat-separated UTE images, using STIR and T1w sequences as standard of reference. For the morphological assessment of fractures and degenerative changes, the overall agreement between SW-like images and CT was substantial to excellent (e.g., Genant:
κ
0.90 (95% confidence interval 0.54–1.00); AO/Magerl:
κ
0.75 (95% confidence interval 0.43–1.00)). Overall inter-reader agreement for water-fat-separated UTE images and SW-like images was substantial to almost perfect.
Conclusion
Detection and assessment of vertebral fractures and degenerative bone changes of the spine were feasible and accurate using water-fat-separated images as well as SW-like images, both derived from the same sUTE-Dixon sequence.
Key Points
• The detection of acute vertebral fractures was feasible using water-fat-separated images and CT-like images reconstructed from one sUTE sequence.
• Assessment of the vertebral fractures using SW-like images with CT-like contrast was found to be comparable to conventional CT.
• sUTE imaging of the spine can help reduce examination times and radiation exposure.
Journal Article
Optimal VLBI baseline geometry for UT1-UTC Intensive observations
by
Schartner, Matthias
,
Böhm, Johannes
,
Soja, Benedikt
in
Accuracy
,
Antennas
,
Earth and Environmental Science
2021
One of the main tasks of Very Long Baseline Interferometry (VLBI) is the rapid determination of the highly variable Earth’s rotation expressed through the difference between Universal Time UT1 and Coordinated Universal Time UTC (dUT1). For this reason, dedicated one hour, single baseline sessions, called
“Intensives”
, are observed on a daily basis. Thus far, the optimal geometry of
Intensive
sessions was understood to include a long east–west extension of the baseline to ensure a dUT1 estimation with highest accuracy. In this publication, we prove that long east–west baselines are the best choice only for certain lengths and orientations. In this respect, optimal orientations may even require significant inclination of the baseline with respect to the equatorial plane. The basis of these findings is a simulation study with subsequent investigations in the partial derivatives of the observed group delays
τ
with respect to dUT1
∂
τ
/
∂
d
U
T
1
. Almost 3000 baselines between artificial stations located on a regular
10
×
10
degree grid are investigated to derive a global and generally valid picture about the best length and orientation of
Intensive
baselines. Our results reveal that especially equatorial baselines or baselines with a center close to the equatorial plane are not suited for
Intensives
although they provide a good east–west extension. This is explained by the narrow right ascension band of visible sources and the resulting lack of variety in the partial derivatives. Moreover, it is shown that north–south baselines are also capable of determining dUT1 with reasonable accuracy, given that the baseline orientation is significantly different from the Earth rotation axis. However, great care must be taken to provide accurate polar motion a priori information for these baselines. Finally, we provide a better metric to assess the suitability of
Intensive
baselines based on the effective spread of
∂
τ
/
∂
d
U
T
1
.
Journal Article
Fingerprints of supersymmetric spin and charge dynamics observed by inelastic neutron scattering
by
Thielemann, Benedikt
,
Wehinger, Björn
,
Boehm, Martin
in
639/766/119/997
,
639/766/483/640
,
Condensed matter physics
2025
Supersymmetry is an algebraic property of a quantum Hamiltonian that, by giving every boson a fermionic superpartner and vice versa, may underpin physics beyond the Standard Model. Fractional bosonic and fermionic quasiparticles are familiar in condensed matter, as in the spin and charge excitations of the
t
-
J
model describing electron dynamics in one-dimensional materials, but this type of symmetry is almost unknown. However, the triplet excitations of a quantum spin ladder in an applied magnetic field provide a supersymmetric analogue of the
t
-
J
chain. Here we perform neutron spectroscopy on the spin-ladder compounds (C
5
D
12
N)
2
CuBr
4
and (C
5
D
12
N)
2
CuCl
4
over a range of applied fields and temperatures, and apply matrix-product-state methods to the ladder and equivalent chain models. From the momentum-resolved dynamics of a single charge-like excitation in a bath of fractional spins, we find essential differences in thermal broadening between the supersymmetric and non-supersymmetric sectors. The persistence of a strict zone-centre pole at all temperatures constitutes an observable consequence of supersymmetry that marks the beginning of supersymmetric studies in experimental condensed matter.
Supersymmetric theories have partner bosonic and fermionic particles. Here, the authors use neutron spectroscopy on spin-ladder materials paired with matrix-product-states calculations to identify superpartner excitations.
Journal Article