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Recurrent drought and late blight disease are the major factors limiting potato productivity in the northwest Ethiopian highlands. Incorporating drought tolerance and late blight resistance in the same genotypes will enable the development of cultivars with high and stable yield potential under erratic rainfall conditions. The objectives of this study were to assess combining ability effects and gene action for tuber yield and traits related to drought tolerance in the International Potato Centre's (CIP's) advanced clones from the late blight resistant breeding population B group 'B3C2' and to identify promising parents and families for cultivar development. Sixteen advanced clones from the late blight resistant breeding population were crossed in two sets using the North Carolina Design II. The resulting 32 families were evaluated together with five checks and 12 parental clones in a 7 x 7 lattice design with two water regimes and two replications. The experiment was carried out at Adet, in northwest Ethiopia under well-watered and water stressed conditions with terminal drought imposed from the tuber bulking stage. The results showed highly significant differences between families, checks, and parents for growth, physiological, and tuber yield related traits. Traits including marketable tuber yield, marketable tuber number, average tuber weight and groundcover were positively correlated with total tuber yield under both drought stressed and well-watered conditions. Plant height was correlated with yield only under drought stressed condition. GCA was more important than SCA for total tuber yield, marketable tuber yield, average tuber weight, plant height, groundcover, and chlorophyll content under stress. This study identified the parents with best GCA and the combinations with best SCA effects, for both tuber yield and drought tolerance related traits. The new population is shown to be a valuable genetic resource for variety selection and improvement of potato's adaptation to the drought prone areas in northwest Ethiopia and similar environments.

Drought strongly influences potato ( Solanum tuberosum ) production and quality. Potato being a drought susceptible crop, the development of varieties with enhanced tolerance to water stress could highly improve productivity in drought prone areas. The objective of this study was to evaluate the ability of several yield based indices to be used in large scale screening for drought tolerance. The experiment included improved varieties, genetic stocks and landraces potatoes grown under drought and irrigated conditions. A group of accessions with high yield under both conditions was identified. Mean productivity (MP), geometric mean productivity (GMP), tolerance (TOL), drought tolerance index (DTI), drought susceptible index (DSI) and yield stability index (YSI) were calculated from tuber yield under drought and irrigated conditions. The relationships between these indices and yield were analyzed. The Fleiss’ Kappa concordance test was used to analyze the correspondence between accessions previously identified as highly productive under both drought and irrigated conditions and accessions with optimal values for the different indices. MP, GMP and DTI allowed identifying genotypes combining high yield potential and high yield under drought within the three subsets of genotypes. Conversely, DSI, YSI and TOL showed low and variable concordance values across subsets, suggesting that their efficiency in screening genotypes highly depends on the nature of the tested genetic material.

The drought stress tolerance of two Solanum tuberosum subsp. andigena landraces, one hybrid (adg×tbr) and Atlantic (S. tuberosum subsp. tuberosum) has been evaluated. Photosynthesis in the Andigena landraces during prolonged drought was maintained significantly longer than in the Tuberosum (Atlantic) line. Among the Andigena landraces, 'Sullu' (SUL) was more drought resistant than 'Negra Ojosa' (NOJ). Microarray analysis and metabolite data from leaf samples taken at the point of maximum stress suggested higher mitochondrial metabolic activity in SUL than in NOJ. A greater induction of chloroplast-localized antioxidant and chaperone genes in SUL compared with NOJ was evident. ABA-responsive TFs were more induced in NOJ compared with SUL, including WRKY1, mediating a response in SA signalling that may give rise to increased ROS. NOJ may be experiencing higher ROS levels than SUL. Metabolite profiles of NOJ were characterized by compounds indicative of stress, for example, proline, trehalose, and GABA, which accumulated to a higher degree than in SUL. The differences between the Andigena lines were not explained by protective roles of compatible solutes; hexoses and complex sugars were similar in both landraces. Instead, lower levels of ROS accumulation, greater mitochondrial activity and active chloroplast defences contributed to a lower stress load in SUL than in NOJ during drought.

Potato is a drought susceptible, often rain-fed crop suffering strongly from even short periods of soil water deficit. With global environmental conditions changing, potato clones resistant to variable water supply are needed and identifying them is a major task. Many indices assessing potato tolerance to water deficit have been proposed, albeit none of them takes into account the severity of the stress or the sensitivity of the developmental stage during which the stress occurs. As a result, data obtained on genotypes in one location or season are normally not useful in another location or in a different season. We have developed an index evaluating yield response of potato to water deficit based on the soil tension the genotype was subjected to for the duration of the stress modified by the development stage of the genotype. The sum of the daily values was combined in a stress severity index (SSI). In total thirteen genotypes differing in duration and sensitivity to drought were subjected to four levels of deficit irrigation on two soil types at different development stages over two years. Early drought (early tuber filling) reduced yields up to 95% whereas late drought (late tuber bulking) reduced yields significantly less. SSI depended on the genotypic phenological development and on the soil tension values and ranges between 25 and 3500. The index differentiated genotypic responses well across treatments and soil types, even with these relatively advanced development stages, up to a value of 1000. Beyond 1000, yields were generally reduced by more than 60% and a differentiation between genotypes was not possible anymore. SSI constitutes a method that renders site, location, year, season, and soil type effects comparable for responses of potato clones to soil water deficit. Combining this measure of stress severity with other proposed indices may improve upon their current weaknesses in finding or identifying the underlying traits of drought tolerance in potato.

We analyzed the cytoplasmic diversity of CIP potato breeding germplasm. Cytoplasm types were assigned to 978 genotypes consisting of 265 foreign accessions used as input germplasm, 642 breeding lines developed by CIP, and 71 varieties released from CIP material. We found T (45 %), D (38 %), and W (11 %) to be the most frequent cytoplasm types in CIP breeding germplasm. Comparing the initial input germplasm to CIP breeding lines, the frequency of T-type cytoplasm decreased from 64 to 38 %, while those of D- and W-type cytoplasms increased from 26 to 41 % and from 6 to 14 %, respectively. We conclude that the CIP breeding program, as many others worldwide, has experienced a genetic bottleneck in terms of cytoplasmic diversity due to the unintended and continuous use of cytoplasmic-based male-sterile maternal lineages derived from Solanum demissum and S. stoloniferum in parental line and variety development. Nonetheless, the finding of male-fertile T-type breeding lines must have alleviated the problem to a certain extent, thus enabling CIP breeding progress.

PREMISE OF THE STUDY: Interspecific reproductive barriers (IRBs) often prevent hybridization between closely related species in sympatry. In the tomato clade (Solanum section Lycopersicon), interspecific interactions between natural sympatric populations have not been evaluated previously. In this study, we assessed IRBs between members of the tomato clade from nine sympatric sites in Peru. METHODS: Coflowering was assessed at sympatric sites in Peru. Using previously collected seeds from sympatric sites in Peru, we evaluated premating prezygotic (floral morphology), postmating prezygotic (pollen‐tube growth), and postzygotic barriers (fruit and seed development) between sympatric species in common gardens. Pollen‐tube growth and seed development were examined in reciprocal crosses between sympatric species. KEY RESULTS: We confirmed coflowering of sympatric species at five sites in Peru. We found three types of postmating prezygotic IRBs during pollen–pistil interactions: (1) unilateral pollen‐tube rejection between pistils of self‐incompatible species and pollen of self‐compatible species; (2) potential conspecific pollen precedence in a cross between two self‐incompatible species; and (3) failure of pollen tubes to target ovules. In addition, we found strong postzygotic IRBs that prevented normal seed development in 11 interspecific crosses, resulting in seed‐like structures containing globular embryos and aborted endosperm and, in some cases, overgrown endothelium. Viable seed and F1 hybrid plants were recovered from three of 19 interspecific crosses. CONCLUSIONS: We have identified diverse prezygotic and postzygotic IRBs that would prevent hybridization between sympatric wild tomato species, but interspecific hybridization is possible in a few cases.

Access to Water and Nitrogen (N) are key challenges in potato crop management that could be optimized through understanding related agronomic and physiological traits. The responses to water deficit and two levels of nitrogen (0 and 200 kg N.ha-1) were assessed here for agronomic and physiological traits for potato genotypes UNICA, Achirana-INTA, and CIP397077.16, chosen for their short vegetative period (90–-110 days) and tolerance to water deficit. Nitrogen Use Efficiency (NUE) was greatly reduced in all genotypes under drought, even dropping to nearly zero. Despite this, the tuber yield and total biomass reduction of around 50 % for all genotypes could be alleviated with N application. Normalized Difference Vegetation Index (NDVI), chlorophyll content (SPAD), and Canopy cover (CC) were found to be good indicators for predicting nitrogen deficits and detecting early stress by drought. Overall, each genotype had different strategies to manage N and cope with drought stress. UNICA was the most efficient genotype at using the N present in the soil and tolerating drought stress, while Achirana-INTA was most affected by drought in terms of NUE. Based on the results, it is suggested that maximum fertilizer use efficiency can be obtained with low N rates applied under well-watered conditions. Improved NUE and a greater understanding of the physiological response of crops to drought stress and N fertilization will help to reduce fertilizer use, lessening the effects of water contamination and improving input efficiency.

Dissection of the genetic architecture of adaptation and abiotic stress-related traits is highly desirable for developing drought-tolerant potatoes and enhancing the resilience of existing cultivars, particularly as agricultural production in rain-fed areas may be reduced by up to 50 % by 2020. The “DMDD” potato progeny was developed at International Potato Center (CIP) by crossing the sequenced double monoploid line DM and a diploid cultivar of the Solanum tuberosum diploid Andigenum Goniocalyx group. Recently, a high-density integrated genetic map based on single nucleotide polymorphism (SNP), diversity array technology (DArT), simple sequence repeats (SSRs), and amplified fragment length polymorphism (AFLP) markers was also made available for this population. Two trials were conducted, in greenhouse and field, for drought tolerance with two treatments each, well-watered and terminal drought, in which watering was suspended 60 days after planting. The DMDD population was evaluated for agro-morphological and physiological traits before and after initiation of stress, at multiple time points. Two dense parental genetic maps were constructed using published genotypic data, and quantitative trait locus (QTL) analysis identified 45 genomic regions associated with nine traits in well-watered and terminal drought treatments and 26 potentially associated with drought stress. In this study, the strong influence of environmental factors besides water shortage on the expression of traits and QTLs reflects the multigenic control of traits related to drought tolerance. This is the first study to our knowledge in potato identifying QTLs for drought-related traits in field and greenhouse trials, giving new insights into genetic architecture of drought-related traits. Many of the QTLs identified have the potential to be used in potato breeding programs for enhanced drought tolerance.

The identification of environmentally stable and globally predictable resistance to potato late blight is challenged by the clonal and polyploid nature of the crop and the rapid evolution of the pathogen. A diversity panel of tetraploid potato germplasm bred for multiple resistance and quality traits was genotyped by genotyping by sequencing (GBS) and evaluated for late blight resistance in three countries where the International Potato Center (CIP) has established breeding work. Health-indexed, in vitro plants of 380 clones and varieties were distributed from CIP headquarters and tuber seed was produced centrally in Peru, China, and Ethiopia. Phenotypes were recorded following field exposure to local isolates of Phytophthora infestans. QTL explaining resistance in four experiments conducted across the three countries were identified in chromosome IX, and environment-specific QTL were found in chromosomes III, V, and X. Different genetic models were evaluated for prediction ability to identify best performing germplasm in each and all environments. The best prediction ability (0.868) was identified with the genomic best linear unbiased predictors (GBLUPs) when using the diploid marker data and QTL-linked markers as fixed effects. Genotypes with high levels of resistance in all environments were identified from the B3, LBHT, and B3-LTVR populations. The results show that many of the advanced clones bred in Peru for high levels of late blight resistance maintain their resistance in Ethiopia and China, suggesting that the centralized selection strategy has been largely successful.

The fingerprinting of 742 potato landraces with 51 simple sequence repeat (SSR, or microsatellite) markers resulted in improving a previously constructed potato genetic identity kit. All SSR marker loci were assayed with a collection of highly diverse landraces of all species of cultivated potato with ploidies ranging from diploid to pentaploid. Loci number, amplification reproducibility, and polymorphic information content were recorded. Out of 148 SSR markers of which 30 are new, we identified 58 new SSR marker locations on at least one of three potato genetic linkage maps. These results permitted the selection of a new potato genetic identity kit based on 24 SSR markers with two per chromosome separated by at least 10 cM, single locus, high polymorphic information content, and high quality of amplicons as determined by clarity and reproducibility. The comparison of a similarity matrix of 742 landraces obtained with the 24 SSR markers of the new kit and with the entire dataset of 51 SSR markers showed a high correlation ( r  = 0.94) by a Mantel test and even higher correlations ( r  = 0.99) regarding topological comparisons of major branches of a neighbor joining tree. This new potato genetic identity kit is able to discriminate 93.5% of the 742 landraces compared to 98.8% with 51 SSR markers. In addition, we made a marker-specific set of allele size standards that conveniently and unambiguously provide accurate sizing of all alleles of the 24 SSR markers across laboratories and platforms. The new potato genetic identity kit will be of particular utility to standardize the choice and allele sizing of microsatellites in potato and aid in collaborative projects by allowing cumulative analysis of independently generated data.