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"Braun, C"
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Use of Microalgae for the Development of Biofertilizers and Biostimulants
2023
Abstract The use of chemical fertilizers in agriculture poses problems for the health of the soil and the environment. Biofertilizers and microalgal biostimulants emerge as an alternative to reduce these damages. This study aimed to understand how microalgae are inserted in the process of developing biofertilizers/biostimulants. A search for research articles was carried out in the Scopus and Web of Science databases and resulted in 87 relevant studies. By analyzing these articles, it was possible to structure this review to understand how microalgal biofertilizers and biostimulants act on plants. The purpose of microalgal biofertilizer is to add nutrients to the soil. The use of wastewater for microalgal growth makes the process less costly and is a treatment alternative. Culture media with higher levels of nitrogen, and microalgae that remove higher levels of nitrate result in biomass with higher levels of protein. Microalgal biostimulants are associated with compounds that can encourage plant growth. These compounds can promote enzymatic and antifungal activity, act similarly to phytohormones, and participate in the synthesis of proteins and amino acids in plants. Microalgal biofertilizers/biostimulants can be part of integrated biorefinery concepts. The integration of the production of these products with the development of biofuels increases the economic viability of these bioproducts. Even though there is a lot of talk about the use of biorefineries, there are few studies on the effective application of this concept with the use of microalgal biomass. An in-depth analysis of the mechanism of action of microalgae in the development of bioproducts for agriculture can make the process more economically advantageous and sustainable.
Journal Article
Deforestation by Afforestation: Land Use Change in the Coastal Range of Chile
2022
In southern Chile, an establishment of a plantation-based forest industry occurred early in the industrial era. Forest companies claim that plantations were established on eroded lands. However, the plantation industry is under suspicion to have expanded its activities by clearing near-natural forests since the early 1970s. This paper uses a methodologically complex classification approach from own previously published research to elucidate land use dynamics in southern Chile. It uses spatial data (extended morphological profiles) in addition to spectral data from historical Landsat imagery, which are fusioned by kernel composition and then classified in a multiple classifier system (based on support, import and relevance vector machines). In a large study area (~67,000 km2), land use change is investigated in a narrow time frame (five-year steps from 1975 to 2010) in a two-way (prospective and retrospective) analysis. The results are discussed synoptically with other results on Chile. Two conclusions can be drawn for the coastal range. Near-natural forests have always been felled primarily in favor of the plantation industry. Vice versa, industrial plantations have always been primarily established on sites, that were formerly forest covered. This refutes the claim that Chilean plantations were established primarily to restore eroded lands; also known as badlands. The article further shows that Chile is not an isolated case of deforestation by afforestation, which has occurred in other countries alike. Based on the findings, it raises the question of the extent to which the Chilean example could be replicated in other countries through afforestation by market economy and climate change mitigation.
Journal Article
Tor1 and CK2 kinases control a switch between alternative ribosome biogenesis pathways in a growth-dependent manner
2017
Ribosome biogenesis is a major energy-consuming process in the cell that has to be rapidly down-regulated in response to stress or nutrient depletion. The target of rapamycin 1 (Tor1) pathway regulates synthesis of ribosomal RNA (rRNA) at the level of transcription initiation. It remains unclear whether ribosome biogenesis is also controlled directly at the posttranscriptional level. We show that Tor1 and casein kinase 2 (CK2) kinases regulate a rapid switch between a productive and a non-productive pre-rRNA processing pathways in yeast. Under stress, the pre-rRNA continues to be synthesized; however, it is processed differently, and no new ribosomes are produced. Strikingly, the control of the switch does not require the Sch9 kinase, indicating that an unrecognized Tor Complex 1 (TORC1) signaling branch involving CK2 kinase directly regulates ribosome biogenesis at the posttranscriptional level.
Journal Article
A ribosome assembly stress response regulates transcription to maintain proteome homeostasis
by
Shore, David
,
Kos-Braun, Isabelle C
,
Henras, Anthony K
in
Biochemistry, Molecular Biology
,
Biosynthesis
,
Cell Biology
2019
Ribosome biogenesis is a complex and energy-demanding process requiring tight coordination of ribosomal RNA (rRNA) and ribosomal protein (RP) production. Given the extremely high level of RP synthesis in rapidly growing cells, alteration of any step in the ribosome assembly process may impact growth by leading to proteotoxic stress. Although the transcription factor Hsf1 has emerged as a central regulator of proteostasis, how its activity is coordinated with ribosome biogenesis is unknown. Here, we show that arrest of ribosome biogenesis in the budding yeast Saccharomyces cerevisiae triggers rapid activation of a highly specific stress pathway that coordinately upregulates Hsf1 target genes and downregulates RP genes. Activation of Hsf1 target genes requires neo-synthesis of RPs, which accumulate in an insoluble fraction and presumably titrate a negative regulator of Hsf1, the Hsp70 chaperone. RP aggregation is also coincident with that of the RP gene activator Ifh1, a transcription factor that is rapidly released from RP gene promoters. Our data support a model in which the levels of newly synthetized RPs, imported into the nucleus but not yet assembled into ribosomes, work to continuously balance Hsf1 and Ifh1 activity, thus guarding against proteotoxic stress during ribosome assembly. When yeast cells are growing at top speed, they can make 2,000 new ribosomes every minute. These enormous molecular assemblies are the protein-making machines of the cell. Building new ribosomes is one of the most energy-demanding parts of cell growth and, if the process goes wrong, the results can be catastrophic. The proteins that make up the ribosomes themselves are sticky. Left unattended, they start to form toxic clumps inside the compartment that houses most of the cell’s DNA, the nucleus. A protein called Heat shock factor 1, or Hsf1 for short, plays an important role in the cell's quality control systems. It helps to manage sticky proteins by switching on genes that break down protein clumps and prevent new clumps from forming. Hsf1 levels start to rise whenever cells are struggling to keep up with protein production. If it is half-finished ribosomes that are causing the problem, cells can stop making ribosome proteins. The protein in charge of this in yeast is Ifh1. It is a transcription factor that sits at the front of the genes for ribosome proteins, switching them on. When yeast cells get stressed, Ifh1 drops away from the genes within minutes, switching them off again. Yet how this happens, and how it links to Hsf1, is a mystery. To start to provide some answers, Albert et al. disrupted the production of ribosomes in yeast cells and examined the consequences. This revealed a new rescue response, that they named the “ribosome assembly stress response”. Both Hsf1 and Ifh1 are sensitive to the build-up of unfinished ribosomes in the nucleus. As expected, Hsf1 activated when ribosome proteins started to build up, and switched on the genes needed to manage the protein clumps. The effect on Isfh1, however, was unexpected. When the unassembled ribosome proteins started to build up, it was the clumps themselves that pulled the Ifh1 proteins off the genes. The unassembled ribosomes proteins seemed to be stopping their own production. Low levels of clumped ribosome proteins in the nuclei of unstressed cells also helped to keep Hsf1 active and pull Ifh1 off the ribosome genes. It is possible that this provides continual protection against a toxic protein build-up. These findings are not only important for understanding yeast cells; cancer cells also need to produce ribosomes at a very high rate to sustain their rapid growth. They too might be prone to stresses that interrupt their ribosome assembly. As such, understanding more about this process could one day lead to new therapies to target cancer cells.
Journal Article
Medical education during the Covid-19 pandemic long-term experiences of German clinical medical students
by
Milch, Pascal M.
,
Werwick, Katrin
,
Braun-Dullaeus, Ruediger C.
in
Biology and Life Sciences
,
Classification
,
College students
2023
Due to the Covid-19 pandemic and the accompanying hygiene regulations, medical students in Germany faced multiple educational and personal challenges. The challenges included the cancellation and digitalisation of courses, the closing of university institutions such as libraries, a decrease in social contacts, and the risk of a Covid-19 infection. The aim of this study was to understand medical students' pandemic experiences as well as the consequences of these experiences for the students' future work as physicians.
We performed 15 guided, one-on-one interviews with clinical medical students (third to fifth year) at the Otto-von-Guericke-University Magdeburg. Interviews were recorded, transcribed, and anonymised. We performed a qualitative content analysis in accordance with Mayring and thereby formed an inductive category system. The Consolidated Criteria for Reporting Qualitative Research (COREQ) were applied.
Five categories were inductively formed: \"Changes in the teaching experience\", \"negative effects on the learning experience\", \"decrease in personal social contacts\", \"contact with covid-19\", and \"pandemic-associated stress increase\". The participating students reported higher levels of stress due to isolation and uncertainty regarding their educational future. Furthermore, students welcomed the digitalisation of lectures, developed individual coping strategies, and voluntarily took part in the care of Covid-19 patients. Limitations to social interactions were perceived as the major restrictive factor to their educational structure, their perceived learning success and personal development.
This study identified social restrictions as well as didactic and academic structural challenges as relevant factors contributing to perceived stress and fear for medical students during the Covid-19 pandemic, especially as regards their learning experience. Students' acceptance of digitalised learning may enable regular interaction with university peers and may facilitate a structured educational life. However, the implementation of digital resources could not provide a sufficient substitute for in-person courses.
Journal Article
Transcriptome analysis of corpora lutea in domestic cats (Felis catus) reveals strong differences in gene expression of various hormones, hormone receptors and regulators across different developmental stages
2025
In the domestic cat (
Felis catus
), the corpus luteum (CL) is the main source of progestogen during pregnancy. Here, we studied gene expression changes in different life cycle stages of the CL of pseudopregnant cats to identify potential regulatory factors. Results revealed no support for different regression substages, which were previously defined on the basis of morphological examination analysis and intraluteal hormone content, as only a very low number of differentially expressed genes and no subclusters in PCA plot were detected. By comparing the regression stage with the developmental/maintenance stage, we detected a total of 6174 differentially expressed genes in the sample set, of which 2882 were upregulated and 3292 were downregulated. The large changes in the expression levels of some genes indicate that the endocrine function of the CL may not be restricted to progesterone (P4) secretion. The findings suggest that domestic cat CLs could also be a source of adipokines such as adiponectin or APELA. The expression of these genes is highly variable and reversed between stages. The life cycle and activity of CLs seem to be regulated by different factors, as genes encoding for the hormone receptors LHCGR and PAQR5 were more highly expressed in the development/maintenance stage, in contrast to this encoding for LEPR, which is higher expressed in regression stage. For regression stage, we identified different potential ways to modulate the cholesterol level and/or P4 concentration. Furthermore, we found differences from previous studies in other species for many genes that were studied in more detail, as well as when analysing functions and pathways. Our findings support the hypothesis that different stages of the CL life cycle in domestic cats can be characterized by changes in gene regulation and that CL life cycles are partly differentially regulated between species.
Journal Article
Maternal effects on reproduction in the precocial European hare (Lepus europaeus)
by
Schai-Braun, Stéphanie C.
,
Steiger, Peter
,
Arnold, Walter
in
Animal lactation
,
Animal reproduction
,
Animals
2021
In female mammals, reproduction, and in particular lactation, is the energetically most exigent life-history phase. Reproduction is strongly controlled by body reserves and food availability, so females with better body condition or food supply are believed to have higher reproductive output. Additionally, the growth and mortality of young mammals depends on their postnatal development. Therefore, the degree of precociality affects energetic demands for both mothers and young. To study the reproductive performance of the precocial European hare ( Lepus europaeus ), we analysed relationships between six predictor variables describing maternal and environmental effects and nine response variables relating to reproduction from 217 captive females. We compared the data with those of precocial and altricial mammal species from an extensive literature search. For hares, we found: (1) Heavier females had heavier litters at birth. (2) In summer and spring, total litter mass was larger than in winter. (3) At the end of lactation, the litters of multiparous females were heavier than those of primiparous females. (4) Both older females and females giving birth for the first time had relatively high leveret mortality during lactation. Comparing our results with the literature for other mammals revealed that the body condition (i.e., body mass) of females before birth is predictive of reproductive parameters in both precocial and altricial species. In the precocial hare, female body condition is no longer predictive of reproductive parameters at the end of lactation, whereas in altricial species, female body condition remains predictive of reproduction (litter mass at the end of lactation, offspring mortality) until the end of lactation. We conclude that these effects are caused by precocial offspring feeding on solid food soon after birth and, thus, being less dependent on the mother’s body condition during lactation than altricial offspring. In line with this, precociality might have evolved as a way of buffering offspring against maternal effects.
Journal Article
The European Hare (Lepus europaeus): A Picky Herbivore Searching for Plant Parts Rich in Fat
by
Arnold, Walter
,
Reichlin, Thomas S.
,
Schai-Braun, Stéphanie C.
in
Agricultural land
,
Animal lactation
,
Animals
2015
European hares of both sexes rely on fat reserves, particularly during the reproduc-tive season. Therefore, hares should select dietary plants rich in fat and energy. However, hares also require essential polyunsaturated fatty acids (PUFA) such as linoleic acid (LA) and alpha-linolenic acid (ALA) to reproduce and survive. Although hares are able to absorb PUFA selectively in their gastrointestinal tract, it is unknown whether this mechanism is sufficient to guarantee PUFA supply. Thus, diet selection may involve a trade-off between a preference for energy versus a preference for crucial nutrients, namely PUFA. We compared plant and nutrient availability and use by hares in an arable landscape in Austria over three years. We found that European hares selected their diet for high energy content (crude fat and crude protein), and avoided crude fibre. There was no evidence of a preference for plants rich in LA and ALA. We conclude that fat is the limiting resource for this herbivorous mammal, whereas levels of LA and ALA in forage are sufficiently high to meet daily requirements, especially since their uptake is enhanced by physiological mechanisms. Animals selected several plant taxa all year round, and preferences did not simply correlate with crude fat content. Hence, European hares might not only select for plant taxa rich in fat, but also for high-fat parts of preferred plant taxa. As hares preferred weeds/grasses and various crop types while avoiding cereals, we suggest that promoting heterogeneous habitats with high crop diversity and set-asides may help stop the decline of European hares throughout Europe.
Journal Article
Movements of the white shark Carcharodon carcharias in the North Atlantic Ocean
2017
In the western North Atlantic, much of what is known about the movement ecology of the white shark Carcharodon carcharias is based on historical fisheries-dependent catch records, which portray a shelf-oriented species that moves north and south seasonally. In this study, we tagged 32 white sharks (16 females, 7 males, 9 unknown), ranging from 2.4 to 5.2 m total length, with satellite-based tags to investigate broad-scale movements in the North Atlantic. Based on 10427 days of tracking data, we found that white sharks are more broadly distributed, both horizontally and vertically, throughout the North Atlantic than previously understood, exhibiting an ontogenetic shift from near-coastal, shelf-oriented habitat to pelagic habitat with frequent excursions to mesopelagic depths. During the coastal phase, white sharks migrated seasonally from the northeast shelf in the summer to overwintering habitat off the southeastern US and the Gulf of Mexico, spending 95% of their time at <50 m depth. During the pelagic phase, subadult and adult white sharks exhibited wide-ranging movements during the fall, winter, and spring into the broader Atlantic over a 30° latitudinal range and as far east as the Azores. These sharks moved daily to depths of up to 1128 m, spending significant time at specific mesopelagic depth zones through a temperature range of 1.6 to 30.4°C. We believe these movements are associated with offshore foraging facilitated by the thermal physiology of the species. Our findings extend the known essential habitat for the white shark in the North Atlantic beyond existing protection, with implications for future conservation.
Journal Article
A SCALABLE APPROACH FOR SPATIO-TEMPORAL ASSESSMENT OF PHOTOVOLTAIC ELECTRICITY POTENTIALS FOR BUILDING FAÇADES OF ENTIRE CITIES
2019
This paper describes results on the development of a completely FOSS-based approach assessing the electricity production potential by building façade PV. To estimate solar irradiation the hemispherical view-shed approach described by (Fu, 1999) was used. Combining it with an approach to dissect walls into regular 3D hyper-points (1-meter spacing) the sun visibility and the sky viewshed throughout the year are calculated. This results in global irradiation per hyper-point. To estimate the economic potential of each façade element an economic model was developed. This is driven by technical parameters of the installation, such as module efficiency, installation and maintenance costs, figures about payback tariffs and envisaged module lifetime. The overall result is a city-wide PV suitability and economic potential map of every building façade.The processing is based on a city model in CityGML format using the 3DCityDB database and the spatial processing functionalities of PostGIS. A set of Python scripts has been developed as a central control instance and manage parallel processing of queries against the database to achieve scalability and improved performance. We run a case study with approximately 7000 single façade elements which are processed. Since we implemented a parallel computation of the façades running on an 80-core dedicated server machine, the completion for an entire city of about 3 million hyper-points points uses a decent amount of time for the given size of the data set. The chosen approach is highly scalable, robust and can be easily implemented through standard tools and libraries.
Journal Article