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"Brophy, Jason"
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Reducing the risk of pet-associated zoonotic infections
2015
Pet ownership can have health, emotional and social benefits; however, pets can serve as a source of zoonotic pathogens. One large, regional survey reported more than 75% of households having contact with a pet,1 and close, intimate interactions with pets (e.g., sleeping in beds with owners, face licking) are common.1,2 Additional surveys suggest that the general public and people at high risk for pet-associated disease are not aware of the risks associated with highrisk pet practices or recommendations to reduce them; for example, 77% of households that obtained a new pet following a cancer diagnosis acquired a high-risk pet.1,3 This statistic is not surprising - studies suggest physicians do not regularly ask about pet contact, nor do they discuss the risks of zoonotic diseases with patients, regardless of the patient's immune status.1,3,4 Patient surveys and epidemiologic studies on the topic suggest that the occurrence of pet-associated disease is low overall.1,8 Owing to a relative absence of reportable pathogens and complicating factors (e.g., non-pet exposure pathways, frequent subclinical shedding by pets), the proportion of human disease attributable to pets is unknown, and any reported frequency of such infections is likely underestimated. Yet, pet contact has been identified as a risk factor for many diseases, with case-control studies and molecular typing data strongly supporting pet sources for bacterial (e.g., Campylobacter, Salmonella), fungal (e.g., dermatophytes), parasitic (e.g., Toxoplasma gondii) and viral pathogens (e.g., lymphocytic choriomeningitis virus).6,9-12 Although pets do not typically directly transmit arthropod-borne diseases to people (e.g., Lyme borreliosis, ehrlichiosis, anaplasmosis), they do bring the zoonotic disease vectors - ticks and fleas - in close proximity to people, potentially increasing disease risk. In immunocompetent people, salmonellosis most often results in self-limiting gastrointestinal disease, although serious disease can develop. The disease can be more severe in patients at high risk, resulting in bacteremia or serious systemic and localized infections, such as meningitis (in newborns) and osteomyelitis (in patients with sickle cell anemia). Although many pet species have been implicated in human disease, amphibians, reptiles, exotic animals, rodents and young poultry pose the greatest risk. Reptiles and amphibians are estimated to be responsible for 11% of all sporadic Salmonella infections among patients less than 21 years of age,11 and direct contact with such animals is not required for zoonotic transmission. In one study, 31% of reptile-associated salmonellosis cases occurred in children less than 5 years of age and 17% occurred in children aged 1 year or younger; these findings highlight the heightened risk in children and the potential for reptile-associated Salmonella to be transmitted without direct contact with the animal or its enclosure.12 Outbreaks of pet-associated salmonellosis involving hedgehogs, rodents, young poultry, frogs and turtles have recently been reported, in which children accounted for a high proportion of cases (35%-70%).23 In addition, various animal foods (e.g., raw meat, raw eggs and raw treats such as pig's ears) are commonly contaminated with Salmonella species. The feeding of these products are well-established risk factors for salmonellosis in pets, and associated human outbreaks have been identified.24,25
Journal Article
Survival Outcomes in a Pediatric Antiretroviral Treatment Cohort in Southern Malawi
by
Brophy, Jason C.
,
Mwinjiwa, Edson
,
Mateyu, Gabriel
in
Acquired immune deficiency syndrome
,
Adolescent
,
AIDS
2016
Pediatric uptake and outcomes in antiretroviral treatment (ART) programmes have lagged behind adult programmes. We describe outcomes from a population-based pediatric ART cohort in rural southern Malawi.
Data were analyzed on children who initiated ART from October/2003 -September/2011. Demographics and diagnoses were described and survival analyses conducted to assess the impact of age, presenting features at enrolment, and drug selection.
The cohort consisted of 2203 children <15 years of age. Age at entry was <1 year for 219 (10%), 1-1.9 years for 343 (16%), 2-4.9 years for 584 (27%), and 5-15 years for 1057 (48%) patients. Initial clinical diagnoses of tuberculosis and wasting were documented for 409 (19%) and 523 (24%) patients, respectively. Median follow-up time was 1.5 years (range 0-8 years), with 3900 patient-years of follow-up. Over the period of observation, 134 patients (6%) died, 1324 (60%) remained in the cohort, 345 (16%) transferred out, and 387 (18%) defaulted. Infants <1 year of age accounted for 19% of deaths, with a 2.7-fold adjusted mortality hazard ratio relative to 5-15 year olds; median time to death was also shorter for infants (60 days) than older children (108 days). Survival analysis demonstrated younger age at ART initiation, more advanced HIV stage, and presence of tuberculosis to each be associated with shorter survival time. Among children <5 years, severe wasting (weight-for-height z-score = -3.0) was also associated with reduced survival.
Cumulative incidence of mortality was 5.2%, 7.1% and 7.7% after 1, 3, and 5 years, respectively, with disproportionate mortality in infants <1 year of age and those presenting with tuberculosis. These findings reinforce the urgent need for early diagnosis and treatment in this population, but also demonstrate that provision of pediatric care in a rural setting can yield outcomes comparable to more resourced urban settings of poor countries.
Journal Article
Structural brain differences in school-aged children who are HIV-exposed uninfected
2025
Background
Antiretroviral therapy (ART) has dramatically reduced perinatal HIV transmission, leading to a growing population of children who are HIV-exposed but uninfected (CHEU). While the neuroanatomic developmental impacts of in utero HIV and ART exposure have been studied in young children, long-term effects on school-aged children are poorly understood, prompting this investigation.
Methods
Fifty-eight CHEU and 38 children who are HIV-unexposed, uninfected (CHUU), 6–12 years old, were recruited through hospitals and community groups in Ontario, Canada. From T1-weighted magnetic resonance images, volume, cortical thickness, and gray-/white-matter tissue volume were extracted. Multiple linear regression models controlling for sex, age, household income, and total brain volume were fit to assess differences by in utero HIV exposure, with additional sex-stratified analyses to uncover sex-specific effects.
Results
Compared with CHUU, CHEU showed total brain volumes that were significantly smaller by 49.7cm
3
(95% CI [− 95.66, − 3.67]) and cortices thinner by 0.08 mm (95% CI [− 0.13, − 0.02]). In male CHEU, three regions displayed volumetric age-exposure interactions: the bilateral pars opercularis at 0.36 cm
3
/year (95% CI [0.10, 0.62]), left rolandic operculum at 0.22 cm
3
/year (95% CI [0.04, 0.39]) and left precentral gyrus at 0.71 cm
3
/year (95% CI [0.22, 1.21]), suggesting delayed maturation in those regions. Bilateral frontal lobe cortical thickness was reduced by 0.07 mm in CHEU (95% CI [− 0.14, − 0.006]), most pronounced in the left orbital middle frontal gyrus with a reduction of 0.20 mm among male CHEU (95% CI [− 0.32, − 0.07]). An age-exposure interaction of 0.06 cm
3
/year in bilateral amygdala volume (95% CI [− 0.11, − 0.01]) suggested reduced growth or altered developmental trajectory among CHEU, whereas male CHEU showed bilateral hippocampal volumes diminished by 0.21 cm
3
(95% CI [− 0.40, − 0.01]).
Conclusions
These findings suggest that in utero HIV and ART exposure have broad neuroanatomic developmental impacts, particularly in boys, with significant differences in brain regions critical for motor function, expressive language, memory, and emotion. These structural differences align with previously reported motor and language deficits and highlight the importance of early intervention and tailored support strategies for CHEU.
Journal Article
SARS-CoV-2 infection in pregnancy and infant outcomes in the first year of life: a retrospective cohort study
2025
Background
There are known maternal and obstetrical risks following SARS-CoV-2 infection in pregnancy, but the impact on offspring is not well known. The objective of this study was to examine offspring risks of hospitalization and emergency department visits in the first year of life following SARS-CoV-2 infection in pregnancy.
Methods
This was a retrospective cohort study in Ontario, Canada of infants born from March 1, 2020 to December 31, 2021 using health administrative databases. The exposure group was defined by a positive SARS-CoV-2 PCR test in pregnancy, while the comparator group included pregnancies without a positive test recorded. The primary outcomes included all-cause offspring hospitalizations and emergency department (ED) visits in the first year of life. Poisson regression was used to adjust for maternal sociodemographic factors, medical and obstetrical history, and health behaviours. The main secondary outcome was risk of infections (including respiratory, gastrointestinal and otitis media infections) in the first year of life. A sensitivity analysis was conducted in which individuals with a negative SARS-CoV-2 test served as the comparator group.
Results
There were 222,448 live births during the study period; following matching 45,958 pregnancies were included. Cases were matched on maternal age, geography, and last menstrual period date in a 10:1 ratio. The exposed group included 5,291 pregnancies and the comparator group included 40,667 pregnancies. There was no significant difference observed between groups in risk of hospitalization (aRR (95% CI): 1.10 (0.99–1.22)). Small increases in risk of both ED visits (aRR 1.12 (1.06–1.17)), and infections (aHR 1.16 (1.11–1.21) were observed in the exposed group. When the comparator group was limited to pregnancies with a negative SARS-CoV-2 test, there was no difference in risk of ED visits, but the increased risk of infections persisted.
Conclusions
A positive SARS-CoV-2 test in pregnancy was not associated with an increased risk of hospitalization in the offspring’s first year, which may be reassuring to parents and healthcare providers. However, there may be a small increased risk of offspring infections.
Journal Article
Clinical Correlates of Human Immunodeficiency Virus–1 (HIV-1) DNA and Inducible HIV-1 RNA Reservoirs in Peripheral Blood in Children With Perinatally Acquired HIV-1 Infection With Sustained Virologic Suppression for at Least 5 Years
by
Kakkar, Fatima
,
Hawkes, Michael
,
Pagliuzza, Amélie
in
and Commentaries
,
ARTICLES AND COMMENTARIES
,
Canada
2020
Abstract
Background
The Early Pediatric Initiation Canada Child Cure Cohort (EPIC4) study is a prospective, multicenter, Canadian cohort study investigating human immunodeficiency virus–1 (HIV-1) reservoirs, chronic inflammation, and immune responses in children with perinatally acquired HIV-1 infection. The focus of this report is HIV-1 reservoirs and correlates in the peripheral blood of children who achieved sustained virologic suppression (SVS) for ≥5 years.
Methods
HIV-1 reservoirs were determined by measuring HIV-1 DNA in peripheral blood mononuclear cells and inducible cell-free HIV-1 RNA in CD4+ T-cells by a prostratin analogue stimulation assay. HIV serology was quantified by signal-to-cutoff ratio (S/CO).
Results
Of 228 enrolled participants, 69 achieved SVS for ≥5 years. HIV-1 DNA, inducible cell-free HIV-1 RNA, and S/COs correlated directly with the age of effective combination antiretroviral therapy (cART) initiation (P < .001, P = .036, and P < .001, respectively) and age when SVS was achieved (P = .002, P = .038, and P < .001, respectively) and inversely with the proportion of life spent on effective cART (P < .001, P = .01, and P < .001, respectively) and proportion of life spent with SVS (P < .001, P = .079, and P < .001, respectively). Inducible cell-free HIV-1 RNA correlated with HIV-1 DNA, most particularly in children with SVS, without virologic blips, that was achieved with the first cART regimen initiated prior to 6 months of age (rho = 0.74; P = .037) or later (rho = 0.87; P < .001). S/COs correlated with HIV-1 DNA (P = .003), but less so with inducible cell-free HIV-1 RNA (P = .09).
Conclusions
The prostratin analogue stimulation assay, with its lower blood volume requirement, could be a valuable method for evaluating inducible HIV-1 reservoirs in children. Standard commercial HIV serology may be a practical initial indirect measure of reservoir size in the peripheral blood of children with perinatally acquired HIV-1 infection.
Human immunodeficiency virus–1 (HIV-1) reservoir sizes in peripheral blood—measured by HIV-1 DNA, inducible cell-free RNA, and quantitative serology—correlate with earlier initiation of and proportions of life spent on effective treatment and with virologic suppression.
Journal Article
Predictive value of repeated cerebrospinal fluid parameters in the outcomes of bacterial meningitis in infants <90 days of age
2020
There are variations in recommendations from different guidelines regarding the indications for repeat lumbar puncture (LP) in young infants with the diagnosis of bacterial meningitis. To evaluate the frequency of repeat LPs and the characteristics of cerebrospinal fluid (CSF) parameters in repeated sampling and their predictive values for adverse outcomes in a national cohort. This cohort study included infants born January 1, 2013 through December 31, 2014, who had proven or suspected bacterial meningitis within the first 90 days of life at seven paediatric tertiary care hospitals across Canada, and who underwent a repeat LP at the discretion of the treating physicians. Forty-nine of 111 infants (44%) underwent repeat LP at a median of 5 (IQR: 3, 13) days after the LP that led to the diagnosis of bacterial meningitis. Those who had meningitis caused by gram negative bacilli were more likely to have repeat LP than those with gram positive bacteria (77% versus 57%; p = 0.012). White blood cell (WBC) count on the second spinal tap yielded an area under the curve of 0.88 for predicting sequelae of meningitis at discharge from the hospital, with a cut-off value of 366 x 10.sup.6 /L, providing a sensitivity of 91% and specificity of 88%. In this multi-centre retrospective cohort study, infants with gram negative meningitis were more likely to have repeated LP. A high WBC on the second CSF sample was predictive of adverse outcome at the time of discharge from the hospital.
Journal Article
Blood Mitochondrial DNA Content in HIV-Exposed Uninfected Children with Autism Spectrum Disorder
by
Kakkar, Fatima
,
Forbes, John
,
Côté, Hélène
in
Antiretroviral drugs
,
Antiretroviral therapy
,
Autism
2018
Long-term outcomes of perinatal exposure to maternal antiretroviral therapy in HIV-exposed uninfected (HEU) children are unknown. However, both HIV antiretroviral therapy and autism spectrum disorder (ASD) have been associated with mitochondrial alterations. Leukocyte mitochondrial DNA (mtDNA) content can serve as a marker for mitochondrial dysfunction. In this cross-sectional, nested case-control study, HEU children with ASD were matched approximately 1:3 on age, sex, and ethnicity to HEU children without ASD, HIV-unexposed uninfected (HUU) controls, and HUU children with ASD. Leukocyte mtDNA content was measured using quantitative PCR. Among 299 HEU in this study, 14 (4.7%) were diagnosed with ASD, which is higher than the general population prevalence estimates. HEU children without ASD and HUU children with ASD had higher mtDNA content than HUU controls. HEU children with ASD had significantly higher mtDNA content than all other study groups. Our results suggest a clear association between elevated leukocyte mtDNA content and both HEU and ASD status. This may implicate mitochondrial dysfunction as a contributor to the high ASD prevalence observed in our cohort.
Journal Article
The impact of electronic consultation on a Canadian tertiary care pediatric specialty referral system: A prospective single-center observational study
2018
Champlain BASE™ (Building Access to Specialists through eConsultation) is a web-based asynchronous electronic communication service that allows primary-care- practitioners (PCPs) to submit \"elective\" clinical questions to a specialist. For adults, PCPs have reported improved access and timeliness to specialist advice, averted face-to-face specialist referrals in up to 40% of cases and high provider satisfaction.
To determine whether the expansion of eConsult to a pediatric setting would result in similar measures of improved healthcare system process and high provider acceptance reported in adults.
Prospective observational cohort study.
Single Canadian tertiary-care academic pediatric hospital (June 2014-16) servicing 1.2 million people.
1. PCPs already using eConsult. 2.Volunteer pediatric specialists provided services in addition to their regular workload. 3.Pediatric patients (< 18 years-old) referred for none-acute care conditions.
Specialty service utilization and access, impact on PCP course-of-action and referral-patterns and survey-based provider satisfaction data were collected.
1064 eConsult requests from 367 PCPs were answered by 23 pediatric specialists representing 14 specialty-services. The top three specialties represented were: General Pediatrics 393 cases (36.9%), Orthopedics 162 (15.2%) and Psychiatry 123 (11.6%). Median specialist response time was 0.9 days (range <1 hour-27 days), most consults (63.2%) required <10minutes to complete and 21/21(100%) specialist survey-respondents reported minimal workload burden. For 515/1064(48.4%) referrals, PCPs received advice for a new or additional course of action; 391/1064(36.7%) referrals resulted in an averted face-to-face specialist visit. In 9 specialties with complete data, the median wait-time was significantly less (p<0.001) for an eConsult (1 day, 95%CI:0.9-1.2) compared with a face-to-face referral (132 days; 95%CI:127-136). The majority (>93.3%) of PCPs rated eConsult as very good/excellent value for both patients and themselves. All specialist survey-respondents indicated eConsult should be a continued service.
Similar to adults, eConsult improves PCP access and timeliness to elective pediatric specialist advice and influences their care decisions, while reporting high end-user satisfaction. Further study is warranted to assess impact on resource utilization and clinical outcomes.
Journal Article
Postnatal prophylaxis and the use of presumptive HIV therapy for the prevention of vertical transmission of HIV in Canada 1997–2020
by
Kakkar, Fatima
,
Boucoiran, Isabelle
,
Lee, Terry
in
Adult
,
Anti-HIV Agents - administration & dosage
,
Anti-HIV Agents - therapeutic use
2025
Introduction Presumptive HIV therapy (PHT) is recommended for post‐natal HIV prophylaxis (PNP) in situations at high risk of HIV vertical transmission (VT), for both prevention of transmission and as early treatment in cases of in utero transmission. The objective of this study was to describe the risk of VT and use PHT among newborns in Canada, and specifically, factors associated with the use of PHT. Methods Data were analysed for all mother‐infant pairs (MIPs) in the Canadian Perinatal HIV Surveillance Program (1997−2020), collected annually from 22 perinatal HIV centres in Canada. Infants were categorized as high risk (delivery viral load [dVL] ≥1000 copies/ml or maternal combined antiretroviral [cART] <4 weeks prior to delivery), moderate risk (dVL detectable and <1000 copies/ml, and maternal cART ≥4 weeks prior to delivery) and low risk (dVL undetectable and maternal cART ≥4 weeks prior to delivery). Neonatal prophylaxis and HIV transmission risk were compared between groups. Results A total of 4743 MIPs were included in the analysis. Overall, 13.3% of newborns received PHT; the most prescribed PHT regimens included combinations using zidovudine, lamivudine and nelfinavir (48.5%) or nevirapine (41.9%). While the most significant risk factor for transmission on univariate analysis was a detectable dVL ≥1000 copies/ml versus undetectable (odds ratio [OR] 27.91 [11.20−69.54]), the risk remained significantly increased at dVL between 400 and 999 copies/ml (OR 31.71 [8.31−120.98], but not at dVL between 50 and 399 copies/ml (OR 3.03 [0.72−12.81]). At dVL 50–399 copies/ml, 29.8% of infants received PHT, increasing to 46.7% at dVL 400–999 copies/ml, and 64.4% of infants at dVL≥1000 copies/ml. The overall risk of transmission was 6% in the high‐risk group, 0.5% in the moderate‐risk group and 0.2% in the low‐risk group. Conclusions PHT has been widely used in Canada in situations at high risk of VT, with 25% of newborns in this risk group receiving PHT as PNP. While PHT may reduce the risk of VT in high‐risk situations and may be of benefit in cases of VT, these data also highlight ongoing gaps in perinatal HIV prevention in Canada.
Journal Article
Chitinase-3-like Protein 1 Is Associated with Poor Virologic Control and Immune Activation in Children Living with HIV
by
Kakkar, Fatima
,
Brophy, Jason
,
Soudeyns, Hugo
in
Adolescent
,
antiretroviral agents
,
Antiretroviral drugs
2022
Perinatally infected children living with HIV (CLWH) face lifelong infection and associated inflammatory injury. Chitinase-like 3 protein-1 (CHI3L1) is expressed by activated neutrophils and may be a clinically informative marker of systemic inflammation in CLWH. We conducted a multi-centre, cross-sectional study of CLWH, enrolled in the Early Pediatric Initiation Canadian Child Cure Cohort Study (EPIC4). Plasma levels of CHI3L1, pro-inflammatory cytokines, and markers of microbial translocation were measured by enzyme-linked immunosorbent assays. Longitudinal clinical characteristics (viral load, neutrophil count, CD4+ and CD8+ T-lymphocyte counts, and antiretroviral (ARV) regimen) were abstracted from patient medical records. One-hundred-and-five (105) CLWH (median age 13 years, 62% female) were included in the study. Seventy-seven (81%) had viral suppression on combination antiviral therapy (cART). The median CHI3L1 level was 25 μg/L (IQR 19–39). CHI3L1 was directly correlated with neutrophil count (ρ = 0.22, p = 0.023) and inversely correlated with CD4/CD8 lymphocyte ratio (ρ = −0.35, p = 0.00040). Children with detectable viral load had higher levels of CHI3L1 (40 μg/L (interquartile range, IQR 33–44) versus 24 μg/L (IQR 19–35), p = 0.0047). CHI3L1 levels were also correlated with markers of microbial translocation soluble CD14 (ρ = 0.26, p = 0.010) and lipopolysaccharide-binding protein (ρ = 0.23, p = 0.023). We did not detect differences in CHI3L1 between different cART regimens. High levels of neutrophil activation marker CHI3L1 are associated with poor virologic control, immune dysregulation, and microbial translocation in CLWH on cART.
Journal Article