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"Brown, Michael W"
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Windsor Castle : a thousand years of a royal palace
\"As England's largest castle and premier royal residence, Windsor Castle is of outstanding importance: historically, architecturally, artistically and in the life of the nation. This authoritative history of the Castle, the first to be published in 100 years, draws upon new research and primary sources to present a general account of Windsor Castle and its immediate environs from around AD700 to the present day, setting this iconic building against the background of wider social, political and cultural events in the life of the monarchy and the nation. Not only is the book richly illustrated with historical drawings, watercolours and photographs from the Royal Collection and elsewhere, it also includes newly commissioned photography and 3D reconstructions of the Castle at key points in its development, showing how this historic site has changed and evolved over 13 centuries\"-- Provided by publisher.
Inorganic Polyphosphate in the Origin and Survival of Species
by
Michael R. W. Brown
,
Kornberg, Arthur
,
Joyce, Gerald
in
Adenosine Triphosphate - metabolism
,
Amino acids
,
Animals
2004
Inorganic polyphosphate (poly P), in chains of tens to hundreds of phosphate residues, linked by high-energy bonds, is environmentally ubiquitous and abundant. In prebiotic evolution it could have provided a flexible, polyanionic scaffold to assemble macromolecules. It has been conserved in every cell in nature. In prokaryotes, a major poly P synthetic enzyme is poly P kinase 1 (PPK1), which is found in 100 bacterial genomes, including numerous pathogens. Null mutants of PPK1, with low poly P levels, are defective in survival: namely, they show defective responses to physical/chemical stresses and predation. Pathogens with a PPK1 deletion are defective in biofilm formation, quorum sensing, general stress and stringent responses, motility, and other virulence properties. With the exception of Dictyostelium, PPK1 is absent in eukaryotes and provides a novel target for chemotherapy that would affect both virulence and susceptibility to antibacterial compounds. Remarkably, another PPK in Dictyostelium discoideum (PPK2) is an actin-related protein (Arp) complex that is polymerized into an actin-like filament, concurrent with its reversible synthesis of a poly P chain from ATP.
Journal Article
Interactions of some common pathogenic bacteria with Acanthamoeba polyphaga
by
Huws, Sharon A.
,
Brown, Michael R. W.
,
Jones, Martin V.
in
Acanthamoeba
,
Acanthamoeba - physiology
,
Acanthamoeba polyphaga
2008
Abstract
Protozoan grazing is a major trophic pathway whereby the biomass re-enters the food web. Nonetheless, not all bacteria are digested by protozoa and the number known to evade digestion, resulting in their environmental augmentation, is increasing. We investigated the interactions of Bacillus cereus, Enterococcus faecalis, Enteropathogenic Escherichia coli (EPEC), Listeria monocytogenes, Salmonella enterica serovar Typhimurium, and methicillin-sensitive Staphylococcus aureus (MSSA), with the amoeba, Acanthamoeba polyphaga. There was evidence of predation of all bacterial species except L. monocytogenes and S. aureus, where extracellular numbers were significantly higher when cultured with amoebae compared with growth in the absence of amoebae. Intracellular growth kinetic experiments and fluorescent confocal microscopy suggest that S. aureus survived and may even multiply within A. polyphaga, whereas there was no apparent intra-amoebal replication of L. monocytogenes and higher numbers were likely sustained on metabolic waste products released during coculture.
Journal Article
polyphosphate kinase 1 (ppk1) mutant of Pseudomonas aeruginosa exhibits multiple ultrastructural and functional defects
2007
Pseudomonas aeruginosa, of medical, environmental, and industrial importance, depends on inorganic polyphosphate (poly P) for a wide range of functions, especially survival. Mutants of PAO1 lacking poly P kinase 1, PPK1, the enzyme responsible for most poly P synthesis in Escherichia coli and other bacteria, are defective in motility, quorum sensing, biofilm formation, and virulence. We describe here multiple defects in the ppk1 mutant PAOM5, including a striking compaction of the nucleoid, distortion of the cell envelope, lack of planktonic motility and exopolymer production, and susceptibility to the β-lactam antibiotic carbenicillin as well as desiccation. We propose that P. aeruginosa with reduced poly P levels undergoes ultrastructural changes that contribute to profound deficiencies in cellular functions.
Journal Article
Inorganic Polyphosphate in Dictyostelium discoideum: Influence on Development, Sporulation, and Predation
by
Gómez-García, María R.
,
Michael R. W. Brown
,
Kornberg, Arthur
in
Aerogenes
,
Animals
,
Bacteria
2005
Dictyostelium discoideum, a social slime mold that forms fruiting bodies with spores, depends on inorganic polyphosphate (poly P) for its cycles of development and for nutritional predation on bacteria. The synthesis of poly P, a polymer of tens or hundreds of phosphate residues linked by high energy, ATP-like bonds, is catalyzed in most bacteria by poly P kinase (PPK1). The eukaryote D. discoideum possesses a homolog of PPK1. We report here that mutants of D. discoideum PPK1 (DdPPK1) have reduced levels of poly P and are deficient in development. Fruiting bodies are smaller and produce fewer spores, which appear to germinate like the wild type (WT). The DdPPK1 mutant formed smaller plaques on bacterial lawns compared with those of the WT. Predation by D. discoideum, assessed by uptake and digestion of Klebsiella aerogenes, showed that fewer bacteria were taken up by the DdPPK1 mutant compared with the WT and were killed less rapidly, indicating a role of poly P and/or DdPPK1 in phagocytosis. On Pseudomonas aeruginosa lawns, cleared plaques were observed with the bacterial PPK1 mutant but not with the WT P. aeruginosa. Thus, poly P is important in predation both for the predator and prey.
Journal Article
Effect of rimonabant on carotid intima–media thickness (CIMT) progression in patients with abdominal obesity and metabolic syndrome: the AUDITOR Trial
by
Job, Bernard
,
O'Leary, Daniel H
,
Després, Jean-Pierre
in
Anti-Obesity Agents - adverse effects
,
Anti-Obesity Agents - therapeutic use
,
Atherosclerosis
2011
ObjectiveThe aim of this trial was to determine whether obese patients benefit from treatment with rimonabant in terms of progression of carotid atherosclerosis. Rimonabant, a selective cannabinoid-1 receptor blocker, reduces body weight and improves cardiometabolic risk factors in patients who are obese.Design, setting, patients, interventions and resultsA prospective, double-blind, placebo-controlled trial (Atherosclerosis Underlying Development assessed by Intima–media Thickness in patients On Rimonabant (AUDITOR)) randomised 661 patients with abdominal obesity and metabolic syndrome to rimonabant or placebo for 30 months of treatment. The absolute change in the average value for six segments of far wall carotid intima–media thickness from baseline to month 30 was 0.010±0.095 mm in the rimonabant group and 0.012±0.091 mm in the placebo group (p=0.67). The annualised change was an increase of 0.005±0.042 mm for the rimonabant-treated group and 0.007±0.043 mm for the placebo-treated group (p=0.45).ConclusionsThere was no difference in atherosclerosis progression between patients receiving rimonabant for 30 months and those receiving placebo for the primary efficacy measure (absolute change in carotid intima–media thickness). These findings are consistent with a similar study using coronary intravascular ultrasound and another study evaluating the occurrence of cardiovascular events. Our findings suggest that a 5% loss of body weight over a 30-month period with rimonabant is insufficient to modify atherosclerosis progression in the carotid artery in obese patients with metabolic syndrome.Clinical trial registration informationclinicaltrials.gov Identifier: NCT00228176.
Journal Article
Evaluation of polychlorinated biphenyl remediation at a superfund site using tree swallows (Tachycineta bicolor) as indicators
by
Spears, Brian L.
,
Brown, Michael W.
,
Hester, Cyrus M.
in
analysis
,
Animals
,
Aquatic ecosystems
2008
We studied tree swallows (Tachycineta bicolor) at the Sangamo National Priorities List (NPL) site and a reference area (Little Grassy) within Crab Orchard National Wildlife Refuge, Illinois, USA, to evaluate the bioavailability of polychlorinated biphenyls (PCBs) at the NPL site following remediation. Tree swallow eggs and 12‐ to 17‐d‐old chicks were collected from April to June 2004 and 2005. Total egg PCB concentrations in eggs did not differ between years at Sangamo; mean concentrations at Sangamo in 2004 to 2005 (4,452 ng/g) were higher than those from Little Grassy in 2004 (351 ng/g; p = 0.002) and 2005 (705 ng/g; p = 0.007). A positive PCB dilution in chicks is equivalent to relatively large amounts of exposure and absorption. Total PCB daily dilution in chicks in 2004 and 2005 averaged 92.4 and —203 ng/g/d at Sangamo and —21.8 and —42.7 ng/g/d at Little Grassy. Dioxin toxic equivalents (TEQs) in eggs in 2004 and 2005 were 1,844 and 676 pg/g at Sangamo and 165 and 128 pg/g at Little Grassy. Mean TEQs in chicks in 2004 and 2005 were 117 and 23.8 pg/g body weight at Sangamo and 0.8 and 0.7 pg/g body weight at Little Grassy. Total PCB concentrations in eggs and chicks at Sangamo and Little Grassy appeared to be comparable to other PCB‐contaminated and reference sites. Our data demonstrate that tree swallows using the Sangamo site continue to accumulate significant quantities of PCBs seven years after remedial actions. These findings prompted a reevaluation of remediation at the site and underscore the importance of postremediation monitoring of ecological receptors, particularly in cases involving persistent environmental contaminants.
Journal Article
Reverse engineering chemical structures from molecular descriptors: how many solutions?
by
Martin, Shawn
,
Brown, W. Michael
,
Faulon, Jean-Loup
in
Biological
,
Biological properties
,
Chemical Engineering
2005
Physical, chemical and biological properties are the ultimate information of interest for chemical compounds. Molecular descriptors that map structural information to activities and properties are obvious candidates for information sharing. In this paper, we consider the feasibility of using molecular descriptors to safely exchange chemical information in such a way that the original chemical structures cannot be reverse engineered. To investigate the safety of sharing such descriptors, we compute the degeneracy (the number of structure matching a descriptor value) of several 2D descriptors, and use various methods to search for and reverse engineer structures. We examine degeneracy in the entire chemical space taking descriptors values from the alkane isomer series and the PubChem database. We further use a stochastic search to retrieve structures matching specific topological index values. Finally, we investigate the safety of exchanging of fragmental descriptors using deterministic enumeration.
Journal Article
Disparate data fusion for protein phosphorylation prediction
by
Sale, Kenneth L.
,
Gray, Genetha A.
,
Williams, Pamela J.
in
Algorithms
,
Amino acids
,
Business and Management
2010
New challenges in knowledge extraction include interpreting and classifying data sets while simultaneously considering related information to confirm results or identify false positives. We discuss a data fusion algorithmic framework targeted at this problem. It includes separate base classifiers for each data type and a fusion method for combining the individual classifiers. The fusion method is an extension of current ensemble classification techniques and has the advantage of allowing data to remain in heterogeneous databases. In this paper, we focus on the applicability of such a framework to the protein phosphorylation prediction problem.
Journal Article
Horizontal transfer of bacterial polyphosphate kinases to eukaryotes: implications for the ice age and land colonisation
by
W Brown, Michael R
,
Hooley, Paul
,
Whitehead, Michael P
in
Algae
,
Amino Acid Sequence
,
Analysis
2013
Background
Studies of online database(s) showed that convincing examples of eukaryote PPKs derived from bacteria type PPK1 and PPK2 enzymes are rare and currently confined to a few simple eukaryotes. These enzymes probably represent several separate horizontal transfer events. Retention of such sequences may be an advantage for tolerance to stresses such as desiccation or nutrient depletion for simple eukaryotes that lack more sophisticated adaptations available to multicellular organisms. We propose that the acquisition of encoding sequences for these enzymes by horizontal transfer enhanced the ability of early plants to colonise the land. The improved ability to sequester and release inorganic phosphate for carbon fixation by photosynthetic algae in the ocean may have accelerated or even triggered global glaciation events. There is some evidence for DNA sequences encoding PPKs in a wider range of eukaryotes, notably some invertebrates, though it is unclear that these represent functional genes.
Polyphosphate (poly P) is found in all cells, carrying out a wide range of essential roles. Studied mainly in prokaryotes, the enzymes responsible for synthesis of poly P in eukaryotes (polyphosphate kinases PPKs) are not well understood. The best characterised enzyme from bacteria known to catalyse the formation of high molecular weight polyphosphate from ATP is PPK1 which shows some structural similarity to phospholipase D. A second bacterial PPK (PPK2) resembles thymidylate kinase. Recent reports have suggested a widespread distribution of these bacteria type enzymes in eukaryotes.
Results
On – line databases show evidence for the presence of genes encoding PPK1 in only a limited number of eukaryotes. These include the photosynthetic eukaryotes
Ostreococcus tauri
,
O. lucimarinus
,
Porphyra yezoensis, Cyanidioschyzon merolae
and the moss
Physcomitrella patens,
as well as the amoeboid symbiont
Capsaspora owczarzaki
and the non-photosynthetic eukaryotes
Dictyostelium
(3 species),
Polysphondylium pallidum
and
Thecamonas trahens
. A second bacterial PPK (PPK2) is found in just two eukaryotes (
O. tauri
and the sea anemone
Nematostella vectensis
). There is some evidence for PPK1 and PPK2 encoding sequences in other eukaryotes but some of these may be artefacts of bacterial contamination of gene libraries.
Conclusions
Evidence for the possible origins of these eukaryote PPK1s and PPK2s and potential prokaryote donors via horizontal gene transfer is presented. The selective advantage of acquiring and maintaining a prokaryote PPK in a eukaryote is proposed to enhance stress tolerance in a changing environment related to the capture and metabolism of inorganic phosphate compounds. Bacterial PPKs may also have enhanced the abilities of marine phytoplankton to sequester phosphate, hence accelerating global carbon fixation.
Journal Article