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result(s) for
"Bruhn, David"
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Australian Marine and Terrestrial Streptomyces-Derived Surugamides, and Synthetic Analogs, and Their Ability to Inhibit Dirofilaria immitis (Heartworm) Motility
2024
A bioassay-guided chemical investigation of a bacterium, Streptomyces sp. CMB-MRB032, isolated from sheep feces collected near Bathurst, Victoria, Australia, yielded the known polyketide antimycins A4a (1) and A2a (2) as potent inhibitors of Dirofilaria immitis (heartworm) microfilaria (mf) motility (EC50 0.0013–0.0021 µg/mL), along with the octapeptide surugamide A (3) and the new N-methylated analog surugamide K (4). With biological data suggesting surugamides may also exhibit activity against D. immitis, a GNPS molecular network analysis of a library of microbes sourced from geographically diverse Australian ecosystems identified a further five taxonomically and chemically distinct surugamide producers. Scaled-up cultivation of one such producer, Streptomyces sp. CMB-M0112 isolated from a marine sediment collected at Shorncliff, Qld, Australia, yielded 3 along with the new acyl-surugamides A1–A4 (5–8). Solid-phase peptide synthesis provided additional synthetic analogs, surugamides S1–S3 (9–11), while derivatization of 3 returned the semi-synthetic surugamide S4 (12) and acyl-surugamides AS1–AS3 (13–15). The natural acyl-surugamide A3 (7) and semi-synthetic acyl-surugamide AS3 (15) were shown to selectively inhibit D. immitis mf motility (EC50 3.3–3.4 µg/mL), however, unlike antimycins 1 and 2, were inactive against the gastrointestinal nematode Haemonchus contortus L1–L3 larvae (EC50 > 25 µg/mL) and were not cytotoxic to mammalian cells (human colorectal carcinoma SW620, IC50 > 30 µg/mL). A structure–activity relationship (SAR) study on the surugamides 3–15 revealed that selective acylation of the Lys3-ε-NH2 correlates with anthelmintic activity.
Journal Article
Mixing‐Induced Mineral Precipitation in Porous Media: Front Development and Its Impact on Flow and Transport
by
Knornschild, Nils
,
Kong, Xiang‐Zhao
,
Zitha, Pacelli L. J
in
Barite
,
Brines
,
Chemical composition
2025
Injectivity decline during brine reinjection poses a significant challenge in the geothermal industry, with reported cases of substantial injectivity reduction and in severe cases, complete well shutdown. Among the reasons behind these issues, chemical processes play a key role due to potential changes in the fluid properties throughout the operation cycle. When reinjected, the fluid with altered chemical composition mixes with in situ fluids, potentially triggering mineral precipitation, which can obstruct flow and reduce injectivity. To better characterize the mechanisms behind the mixing‐induced mineral precipitation processes, we performed a series of core‐flooding experiments combined with high‐resolution imaging techniques. Our study focuses on the direct visualization of barite precipitation fronts in Berea sandstone and characterizes their spatial and temporal evolution under varying flow conditions. Pressure response and time‐resolved 2D scanning were analyzed to capture real‐time changes in the system, whereas post‐experiment micro‐CT scanning, electron microprobe analysis, and mass spectrometry were employed to examine the morphology and distribution of the mineral deposits. Our results highlight the critical role of flow velocities on the kinetics of mixing‐induced precipitation and demonstrate how mineral accumulation may significantly reduce permeability. These findings provide valuable insights into the dynamics of mineral precipitation in porous media, highlighting the impact of flow conditions on formation damage in geothermal systems.
Journal Article
Geothermal Resources and ATES Potential of Mesozoic Reservoirs in the North German Basin
2022
Mesozoic sandstone aquifers in the North German Basin offer significant potential to provide green and sustainable geothermal heat as well as large-scale storage of heat or chill. The determination of geothermal and subsurface heat storage potentials is still afflicted with obstacles due to sparse and partly uncertain subsurface data. Relevant data include the structural and depositional architecture of the underground and the detailed petrophysical properties of the constituting rocks; both are required for a detailed physics-based integrated modeling and a potential assessment of the subsurface. For the present study, we combine recently published basin-wide structural interpretations of depth horizons of the main stratigraphic formations, with temperature data from geological and geostatistical 3D models (i.e., CEBS, GeotIS). Based on available reservoir sandstone facies data, additional well-log-based reservoir lithology identification, and by providing technical boundary conditions, we calculated the geothermal heat in place and the heat storage potential for virtual well doublet systems in Mesozoic reservoirs. This analysis reveals a large potential for both geothermal heating and aquifer thermal energy storage in geologically favorable regions, and in many areas with a high population density or a high heat demand. Given the uncertainties in the input data, the applied methods and the combination of data from different sources are most powerful in identifying promising regions for economically feasible subsurface utilization, and will help decrease exploration risks when combined with detailed geological site analysis beforehand.
Journal Article
Spectinamides: a new class of semisynthetic antituberculosis agents that overcome native drug efflux
2014
New antibiotics are needed to treat drug-resistant
Mycobacterium tuberculosis
infections. Richard Lee and his colleagues now report a new series of semisynthetic spectinomycin analogs that show promise as potentially safe and effective antitubercular drug candidates.
Although the classical antibiotic spectinomycin is a potent bacterial protein synthesis inhibitor, poor antimycobacterial activity limits its clinical application for treating tuberculosis. Using structure-based design, we generated a new semisynthetic series of spectinomycin analogs with selective ribosomal inhibition and excellent narrow-spectrum antitubercular activity. In multiple murine infection models, these spectinamides were well tolerated, significantly reduced lung mycobacterial burden and increased survival.
In vitro
studies demonstrated a lack of cross resistance with existing tuberculosis therapeutics, activity against multidrug-resistant (MDR) and extensively drug-resistant tuberculosis and an excellent pharmacological profile. Key to their potent antitubercular properties was their structural modification to evade the Rv1258c efflux pump, which is upregulated in MDR strains and is implicated in macrophage-induced drug tolerance. The antitubercular efficacy of spectinamides demonstrates that synthetic modifications to classical antibiotics can overcome the challenge of intrinsic efflux pump-mediated resistance and expands opportunities for target-based tuberculosis drug discovery.
Journal Article
Design, synthesis and microbiological evaluation of ampicillin–tetramic acid hybrid antibiotics
by
Deshpande, Aditi
,
Hurdle, Julian G
,
Cheramie, Martin N
in
101/58
,
631/154/309/2419
,
Ampicillin - administration & dosage
2017
Exploiting iron-uptake pathways by conjugating β-lactam antibiotics with iron-chelators, such as catechol and hydroxamic acid is a proven strategy to overcome permeability-related resistance in Gram-negative bacteria. As naturally occurring iron-chelating tetramic acids have not been previously examined for this purpose, an exploratory series of novel ampicillin–tetramic acid hybrids that structurally resemble ureidopenicillins was designed and synthesized. The new analogs were evaluated for the ability to chelate iron and their MIC activities determined against a representative panel of clinically significant bacterial pathogens. The tetramic acid β-lactam hybrids demonstrated a high affinity to iron in the order of 10
−30
M
3
. The hybrids were less active against Gram-positive bacteria. However, against Gram-negative bacteria, their activity was species dependent with several hybrids displaying improved activity over ampicillin against wild-type
Pseudomonas aeruginosa
. The anti-Gram-negative activities of the hybrids improved in the presence of clavulanic acid revealing that the tetramic acid moiety did not provide added protection against β-lactamases. In addition, the hybrids were found to be efflux pump substrates as their activities markedly improved against pump-inactivated strains. Unlike the catechol and hydroxamic acid siderophore β-lactam conjugates, the activities of the hybrids did not improve under iron-deficient conditions. These results suggest that the tetramic acid hybrids gain permeability via different membrane receptors, or they are outcompeted by native bacterial siderophores with stronger affinities for iron. This study provides a foundation for the further exploitation of the tetramic acid moiety to achieve novel β-lactam anti-Gram-negative agents, providing that efflux and β-lactamase mediated resistance is addressed.
Journal Article
A fracture flow permeability and stress dependency simulation applied to multi-reservoirs, multi-production scenarios analysis
by
Gholizadeh, Nima Doonechaly
,
Lepillier, Baptiste
,
Bruhn, David
in
Apertures
,
Calderas
,
Computational fluid dynamics
2019
The use of the subsurface and the exploitation of subsurface resources require prior knowledge of fluid flow through fracture networks. For nuclear waste disposal, for the enhancement of hydrocarbon recovery from a field, or the development of an enhanced geothermal system (EGS), it is fundamental to constrain the fractures and the fracture network. This study is part of the GEMex project, an international collaboration of two consortia, one from Europe and one from Mexico. The research is based on exploration, characterization and assessment of two geothermal systems located in the Trans-Mexican volcanic belt, Los Humeros and Acoculco. In Acoculco, two wells reached very high temperatures, but did not find any fluids. For that reason, the Acoculco Caldera is foreseen as an EGS development site, hoping to connect existing wells to a productive zone. This implies that the fluid flow through the geothermal reservoir would be mainly fracture dominated. This study investigates the dependency of fracture permeability, constrained by fracture lengths and apertures, with stress field conditions. Simulations are computed in 2D, using COMSOL Multiphysics\\[^ \\] Finite Elements Method Software, populated with mechanical data obtained in the rock physics laboratory and with dense discrete fracture networks generated from 1D scanline surveys measured in Las Minas analogue outcrops for Acoculco reservoir. The method offers a prediction for multiple scenarios of the reservoir flow characteristics which could be a major improvement in the development of the EGS technology.
Journal Article
In vitro and in vivo Evaluation of Synergism between Anti-Tubercular Spectinamides and Non-Classical Tuberculosis Antibiotics
by
Bruhn, David F.
,
Lee, Richard E.
,
Lenaerts, Anne J.
in
631/326/22/1290
,
639/638/92
,
692/308/153
2015
Spectinamides are new semi-synthetic spectinomycin derivatives with potent anti-tubercular activity. The reported synergism of the precursor spectinomycin with other antibiotics prompted us to examine whether spectinamides sensitize
M. tuberculosis
to other antibiotics not traditionally used in the treatment of tuberculosis to potentially expand therapeutic options for MDR/XDR Tuberculosis. Whole cell synergy checkerboard screens were performed using the laboratory strain
M. tuberculosis
H37Rv, lead spectinamide 1599 and a broad panel of 27 antibiotics.
In vitro
, 1599 synergized with 11 drugs from 6 antibiotic classes. The observed synergy was tested against clinical isolates confirming synergy with Clarithromycin, Doxycycline and Clindamycin, combinations of which were taken forward for
in vivo
efficacy determination. Co-administration of 1599 and clarithromycin provided additional bacterial killing in a mouse model of acute tuberculosis infection, but not in a chronic infection model. Further studies indicated that mismatched drug exposure profiles likely permitted induction of phenotypic clarithromycin resistance and subsequent loss of synergism. These studies highlight the importance of validating
in vitro
synergism and the challenge of matching drug exposures to obtain a synergistic outcome
in vivo
. Results from this study indicate that a 1599 clarithromycin combination is potentially viable, providing the drug exposures can be carefully monitored.
Journal Article
Goondapyrones A–J: Polyketide α and γ Pyrone Anthelmintics from an Australian Soil-Derived Streptomyces sp
by
Jin, Shengbin
,
Bruhn, David F.
,
Moreno, Yovany
in
Analytical chemistry
,
anthelmintic
,
Anthelmintic agents
2024
An investigation of ×19 soil samples collected under the auspices of the Australian citizen science initiative, Soils for Science, returned ×559 chemically dereplicated microbial isolates, of which ×54 exhibited noteworthy anthelmintic activity against either the heartworm Dirofilaria immitis microfilaria and/or the gastrointestinal parasite Haemonchus contortus L1–L3 larvae. Chemical (GNPS and UPLC-DAD) and cultivation (MATRIX) profiling prompted a detailed chemical investigation of Streptomyces sp. S4S-00196A10, which yielded new anthelmintic polyketide goondapyrones A–J (1–10), together with the known actinopyrones A (11) and C (12). Structures for 1–12 were assigned on the basis of detailed spectroscopic and chemical analysis, with preliminary structure activity relationship analysis revealing selected γ-pyrones >50-fold and >13-fold more potent than isomeric α-pyrones against D. immitis mf motility (e.g., EC50 0.05 μM for 1; EC50 2.7 μM for 5) and H. contortus L1–L3 larvae development (e.g., EC50 0.58 μM for 1; EC50 8.2 μM for 5), respectively.
Journal Article
Goondicones A–H: Spiro-Isoindolinone Heartworm Anthelmintics from an Australian Pasture-Soil-Derived Streptomyces sp
by
Bruhn, David F.
,
Moreno, Yovany
,
Han, Jianying
in
Animal welfare
,
anthelmintic
,
Anthelmintic agents
2024
Background/Objectives: There is an urgent need for new and improved anthelmintics that are not constrained by existing resistance pathways and that can safeguard the health and welfare of animals. Methods: An integrated platform of chemical, bioassay, and cultivation profiling applied to a library of microbes isolated from Australian livestock pasture soil was used to detect and guide the production, isolation, characterization, identification, and evaluation of new natural products with anthelmintic properties. Results: A global natural products social (GNPS) molecular network analysis of 110 Australian pasture-soil-derived microbial extracts prioritized for antiparasitic activity identified unique molecular families in the extract of Streptomyces sp. S4S-00185A06, a strain selectively active against Dirofilaria immitis microfilariae. UPLC-DAD analysis identified metabolites with unique UV-vis chromophores and unprecedented molecular formulas. A chemical investigation of Streptomyces sp. S4S-00185A06 yielded goondicones A–H (1–8) as new examples of a rare class of spiro-isoindolinones, with structures assigned on the basis of detailed spectroscopic analysis, ECD calculations, and biosynthetic considerations. Conclusions: While goondicones 1–8 exhibit little to no in vitro inhibitory activity against Gram-positive, Gram-negative, and/or fungal pathogens, human carcinoma cells, or the livestock gastrointestinal parasite Haemonchus contortus L1–L3 larvae, 5 and 6 (and, to a lesser extent, 1) inhibit the motility of heartworm Dirofilaria immitis microfilaria (IC50 10–11 μM). A structure activity relationship analysis based on the co-metabolites 1–8 suggests that (i) an 8-OH is preferable to 8–oxo moiety, (ii) 20-NMe and 3-OH moieties are essential, and (iii) C-9 epimerization exerts no discernible impact on in vitro potency.
Journal Article
Pentacyclic Nitrofurans with In Vivo Efficacy and Activity against Nonreplicating Mycobacterium tuberculosis
by
Bruhn, David F.
,
Singh, Aman P.
,
McNeil, Michael R.
in
Analogs
,
Antibiotics
,
Antimicrobial agents
2014
The reductively activated nitroaromatic class of antimicrobials, which include nitroimidazole and the more metabolically labile nitrofuran antitubercular agents, have demonstrated some potential for development as therapeutics against dormant TB bacilli. In previous studies, the pharmacokinetic properties of nitrofuranyl isoxazolines were improved by incorporation of the outer ring elements of the antitubercular nitroimidazole OPC-67683. This successfully increased stability of the resulting pentacyclic nitrofuran lead compound Lee1106 (referred to herein as 9a). In the current study, we report the synthesis and antimicrobial properties of 9a and panel of 9a analogs, which were developed to increase oral bioavailability. These hybrid nitrofurans remained potent inhibitors of Mycobacterium tuberculosis with favorable selectivity indices (>150) and a narrow spectrum of activity. In vivo, the pentacyclic nitrofuran compounds showed long half-lives and high volumes of distribution. Based on pharmacokinetic testing and lack of toxicity in vivo, 9a remained the series lead. 9a exerted a lengthy post antibiotic effect and was highly active against nonreplicating M. tuberculosis grown under hypoxia. 9a showed a low potential for cross resistance to current antitubercular agents, and a mechanism of activation distinct from pre-clinical tuberculosis candidates PA-824 and OPC-67683. Together these studies show that 9a is a nanomolar inhibitor of actively growing as well as nonreplicating M. tuberculosis.
Journal Article