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"Bui, T. C."
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Identification of Bacillus Strains for Biological Control of Catfish Pathogens
by
Carrias, Abel
,
Terhune, Jeffery S.
,
Ran, Chao
in
Aeromonas hydrophila - physiology
,
Agriculture
,
Animal Feed
2012
Bacillus strains isolated from soil or channel catfish intestine were screened for their antagonism against Edwardsiella ictaluri and Aeromonas hydrophila, the causative agents of enteric septicemia of catfish (ESC) and motile aeromonad septicaemia (MAS), respectively. Twenty one strains were selected and their antagonistic activity against other aquatic pathogens was also tested. Each of the top 21 strains expressed antagonistic activity against multiple aquatic bacterial pathogens including Edwardsiella tarda, Streptococcus iniae, Yersinia ruckeri, Flavobacterium columnare, and/or the oomycete Saprolegnia ferax. Survival of the 21 Bacillus strains in the intestine of catfish was determined as Bacillus CFU/g of intestinal tissue of catfish after feeding Bacillus spore-supplemented feed for seven days followed by normal feed for three days. Five Bacillus strains that showed good antimicrobial activity and intestinal survival were incorporated into feed in spore form at a dose of 8×10(7) CFU/g and fed to channel catfish for 14 days before they were challenged by E. ictaluri in replicate. Two Bacillus subtilis strains conferred significant benefit in reducing catfish mortality (P<0.05). A similar challenge experiment conducted in Vietnam with four of the five Bacillus strains also showed protective effects against E. ictaluri in striped catfish. Safety of the four strains exhibiting the strongest biological control in vivo was also investigated in terms of whether the strains contain plasmids or express resistance to clinically important antibiotics. The Bacillus strains identified from this study have good potential to mediate disease control as probiotic feed additives for catfish aquaculture.
Journal Article
Field evaluation of the establishment potential of wmelpop Wolbachia in Australia and Vietnam for dengue control
2015
Background
Introduced
Wolbachia
bacteria can influence the susceptibility of
Aedes aegypti
mosquitoes to arboviral infections as well as having detrimental effects on host fitness. Previous field trials demonstrated that the
w
Mel strain of
Wolbachia
effectively and durably invades
Ae. aegypti
populations. Here we report on trials of a second strain,
w
MelPop-PGYP
Wolbachia,
in field sites in northern Australia (Machans Beach and Babinda) and central Vietnam (Tri Nguyen, Hon Mieu Island), each with contrasting natural
Ae. aegypti
densities.
Methods
Mosquitoes were released at the adult or pupal stages for different lengths of time at the sites depending on changes in
Wolbachia
frequency as assessed through PCR assays of material collected through Biogents-Sentinel (BG-S) traps and ovitraps. Adult numbers were also monitored through BG-S traps. Changes in
Wolbachia
frequency were compared across hamlets or house blocks.
Results
Releases of adult
w
MelPop
-Ae. aegypti
resulted in the transient invasion of
w
MelPop in all three field sites. Invasion at the Australian sites was heterogeneous, reflecting a slower rate of invasion in locations where background mosquito numbers were high. In contrast, invasion across Tri Nguyen was relatively uniform. After cessation of releases, the frequency of
w
MelPop declined in all sites, most rapidly in Babinda and Tri Nguyen. Within Machans Beach the rate of decrease varied among areas, and
w
MelPop was detected for several months in an area with a relatively low mosquito density.
Conclusions
These findings highlight challenges associated with releasing
Wolbachia
-
Ae. aegypti
combinations with low fitness, albeit strong virus interference properties, as a means of sustainable control of dengue virus transmission.
Journal Article
National surveillance for influenza and influenza-like illness in Vietnam, 2006−2010
2013
•During 2006–2010 in Vietnam, influenza viruses co-circulated most years and often peaked multiple times each year.•22% of patients with ILI enrolled in the National Influenza Surveillance System (NISS) in Vietnam were influenza positive.•9.3% of ILI patients in NISS in Vietnam were reported as subsequently hospitalized, of which 19% were influenza positive.•NISS suggests influenza is an important cause of ILI and reported subsequent hospitalization among outpatients in Vietnam.
Influenza virus infections result in considerable morbidity and mortality both in the temperate and tropical world. Influenza surveillance over multiple years is important to determine the impact and epidemiology of influenza and to develop a national vaccine policy, especially in countries developing influenza vaccine manufacturing capacity, such as Vietnam. We conducted surveillance of influenza and influenza-like illness in Vietnam through the National Influenza Surveillance System during 2006–2010. At 15 sentinel sites, the first two patients presenting each weekday with influenza-like illness (ILI), defined as fever and cough and/or sore throat with illness onset within 3 days, were enrolled and throat specimens were collected and tested for influenza virus type and influenza A subtype by RT-PCR. De-identified demographic and provider reported subsequent hospitalization information was collected on each patient. Each site also collected information on the total number of patients with influenza-like illness evaluated per week. Of 29,804 enrolled patients presenting with influenza-like illness, 6516 (22%) were influenza positive. Of enrolled patients, 2737 (9.3%) were reported as subsequently hospitalized; of the 2737, 527 (19%) were influenza positive. Across all age groups with ILI, school-aged children had the highest percent of influenza infection (29%) and the highest percent of subsequent hospitalizations associated with influenza infection (28%). Influenza viruses co-circulated throughout most years in Vietnam during 2006–2010 and often reached peak levels multiple times during a year, when >20% of tests were influenza positive. Influenza is an important cause of all influenza-like illness and provider reported subsequent hospitalization among outpatients in Vietnam, especially among school-aged children. These findings may have important implications for influenza vaccine policy in Vietnam.
Journal Article
Climate change and groundwater resources in Mekong Delta, Vietnam
Groundwater resources have considerable influences on the human population and socioeconomic development of Vietnam and the Mekong River Delta (MRD). This paper presents an overview of the relationship between climate change and groundwater in the MRD, including the challenges, strategies and technical measures. Our results showed that groundwater levels are related to other climate and hydrological variables (/.e., rainfall, river levels, etc.); therefore, the impacts of climate change on the groundwater resources of the Mekong delta are significant, especially on groundwater recharge. Based on the results of this study, it is recommended that groundwater development in the future should focus on reducing groundwater harvesting, enhancing groundwater quantity by establishing artificial works and exploiting surface water. This study suggests that the Artificial Neural Network (ANN) model is an effective tool for forecasting groundwater levels in periods of 1 month and 3 months for aquifers in the natural and tidal regime areas of the delta.
Journal Article
Comparative study of reductive amination reaction on 5-(4-formyl-3,5-dimethoxyphenoxy)valeric acid and its monomethoxy analog using the Multipin™ approach
by
Bui, Chinh T.
,
Campbell, Rhonda
,
Bray, Andrew M.
in
Acids
,
Amination
,
Benzaldehydes - chemical synthesis
1998
The 5-(4-formyl-3,5-dimethoxyphenoxy)valeric acid (Barany) linker and its monomethoxy analog were applied to the Multipin method of solid phase synthesis. A comparative assessment of reductive amination and cleavage of these linkers under conditions of multiple synthesis indicated that both were applicable to a broad range of primary amines including aniline and 4-nitroaniline. Apart from the greater lability of the dimethoxy version under TFA cleavage, there was no observable advantage of one linker over the other within the described experiment.
Journal Article
Modeling rammed earth wall using discrete element method
2016
Rammed earth is attracting renewed interest throughout the world thanks to its “green” characteristics in the context of sustainable development. Several research studies have thus recently been carried out to investigate this material. Some of them attempted to simulate the rammed earth’s mechanical behavior by using analytical or numerical models. Most of these studies assumed that there was a perfect cohesion at the interface between earthen layers. This hypothesis proved to be acceptable for the case of vertical loading, but it could be questionable for horizontal loading. To address this problem, discrete element modeling seems to be relevant to simulate a rammed earth wall. To our knowledge, no research has been conducted thus far using discrete element modeling to study a rammed earth wall. This paper presents an assessment of the discrete element modeling’s robustness for rammed earth walls. Firstly, a brief description of the discrete element modeling is presented. Then the parameters necessary for discrete element modeling of the material law of the earthen layers and their interfaces law following the Mohr–Coulomb model with a tension cut-off and post-peak softening were given. The relevance of the model and the material parameters were assessed by comparing them with experimental results from the literature. The results showed that, in the case of vertical loading, interfaces did not have an important effect. In the case of diagonal loading, model with interfaces produced better results. Interface characteristics can vary from 85 to 100% of the corresponding earthen layer’s characteristics.
Journal Article
The aryl hydrocarbon receptor regulates focal adhesion sites through a non-genomic FAK/Src pathway
2013
The aryl hydrocarbon receptor (AhR) is commonly described as a transcription factor, which regulates xenobiotic-metabolizing enzymes. Recent studies have suggested that the binding of ligands to the AhR also activates the Src kinase. In this manuscript, we show that the AhR, through the activation of Src, activates focal adhesion kinase (FAK) and promotes integrin clustering. These effects contribute to cell migration. Further, we show that the activation of the AhR increases the interaction of FAK with the metastatic marker, HEF1/NEDD9/CAS-L, and the expression of several integrins. Xenobiotic exposure, thus, may contribute to novel cell-migratory programs.
Journal Article
Childhood Lung Function Predicts Adult Chronic Obstructive Pulmonary Disease and Asthma–Chronic Obstructive Pulmonary Disease Overlap Syndrome
by
Lowe, Adrian J.
,
Giles, Graham G.
,
Lodge, Caroline J.
in
Asthma
,
Asthma - physiopathology
,
Child
2017
The burden of chronic obstructive pulmonary disease (COPD) is increasing, yet there are limited data on early life risk factors.
To investigate the role of childhood lung function in adult COPD phenotypes.
Prebronchodilator spirometry was performed for a cohort of 7-year-old Tasmanian children (n = 8,583) in 1968 who were resurveyed at 45 years, and a selected subsample (n = 1,389) underwent prebronchodilator and post-bronchodilator spirometry. For this analysis, COPD was spirometrically defined as a post-bronchodilator FEV
/FVC less than the lower limit of normal. Asthma-COPD overlap syndrome (ACOS) was defined as the coexistence of both COPD and current asthma. Associations between childhood lung function and asthma/COPD/ACOS were examined using multinomial regression.
At 45 years, 959 participants had neither current asthma nor COPD (unaffected), 269 had current asthma alone, 59 had COPD alone, and 68 had ACOS. The reweighted prevalence of asthma alone was 13.5%, COPD alone 4.1%, and ACOS 2.9%. The lowest quartile of FEV
at 7 years was associated with ACOS (odds ratio, 2.93; 95% confidence interval, 1.32-6.52), but not COPD or asthma alone. The lowest quartile of FEV
/FVC ratio at 7 years was associated with ACOS (odds ratio, 16.3; 95% confidence interval, 4.7-55.9) and COPD (odds ratio, 5.76; 95% confidence interval, 1.9-17.4), but not asthma alone.
Being in the lowest quartile for lung function at age 7 may have long-term consequences for the development of COPD and ACOS by middle age. Screening of lung function in school age children may identify a high-risk group that could be targeted for intervention. Further research is needed to understand possible modifiers of these associations and develop interventions for children with impaired lung function.
Journal Article
Development of novel hybridized models for urban flood susceptibility mapping
by
Darabi, Hamid
,
Karimidastenaei, Zahra
,
Mohammadi, Farnoush
in
704/172/4081
,
704/242
,
Algorithms
2020
Floods in urban environments often result in loss of life and destruction of property, with many negative socio-economic effects. However, the application of most flood prediction models still remains challenging due to data scarcity. This creates a need to develop novel hybridized models based on historical urban flood events, using, e.g., metaheuristic optimization algorithms and wavelet analysis. The hybridized models examined in this study (Wavelet-SVR-Bat and Wavelet-SVR-GWO), designed as intelligent systems, consist of a support vector regression (SVR), integrated with a combination of wavelet transform and metaheuristic optimization algorithms, including the grey wolf optimizer (GWO), and the bat optimizer (Bat). The efficiency of the novel hybridized and standalone SVR models for spatial modeling of urban flood inundation was evaluated using different cutoff-dependent and cutoff-independent evaluation criteria, including area under the receiver operating characteristic curve (AUC), Accuracy (A), Matthews Correlation Coefficient (MCC), Misclassification Rate (MR), and F-score. The results demonstrated that both hybridized models had very high performance (Wavelet-SVR-GWO: AUC = 0.981, A = 0.92, MCC = 0.86, MR = 0.07; Wavelet-SVR-Bat: AUC = 0.972, A = 0.88, MCC = 0.76, MR = 0.11) compared with the standalone SVR (AUC = 0.917, A = 0.85, MCC = 0.7, MR = 0.15). Therefore, these hybridized models are a promising, cost-effective method for spatial modeling of urban flood susceptibility and for providing in-depth insights to guide flood preparedness and emergency response services.
Journal Article
Bioaerosol Sampling to Detect Avian Influenza Virus in Hanoi’s Largest Live Poultry Market
by
Lee, Hu Suk
,
Gray, Gregory C.
,
McCallion, Katie A.
in
Air Microbiology
,
Animals
,
ARTICLES AND COMMENTARIES
2019
Abstract
Background
Newly emergent and virulent strains of H7N9 avian influenza virus are rapidly spreading in China and threaten to invade Vietnam. We sought to introduce aerosol sampling for avian influenza viruses in Vietnam.
Methods
During October 2017, National Institute for Occupational Safety and Health 2-stage aerosol samplers were assembled on a tripod and run for 4 hours. Concomitantly, up to 20 oropharyngeal (OP) swab samples were collected from chickens and ducks distanced at 0.2-1.5 m from each sampler.
Results
The 3 weeks of sampling yielded 30 aerosol samples that were 90% positive for influenza A, by quantitative reverse-transcription polymerase chain reaction, and 116 OP swab sample pools (5 samples per pool) that were 47% positive. Egg cultures yielded 1 influenza A virus (not H5 or H7) from aerosol and 25 influenza A viruses from OP swab sample pools (5 were H5 positive). The association between positive sample types (over time and position) was strong, with 91.7% of positive OP pooled swab samples confirmed by positive aerosol samples and 81% of influenza A positive aerosol samples confirmed by positive OP swab samples.
Conclusions
We posit that aerosol sampling might be used for early warning screening of poultry markets for novel influenza virus detection, such as H7N9. Markets with positive aerosol samples might be followed up with more focused individual bird or cage swabbing, and back-tracing could be performed later to locate specific farms harboring novel virus. Culling birds in such farms could reduce highly pathogenic avian influenza virus spread among poultry and humans.
We found strong agreement between influenza A-positive aerosol and bird swab samples. We propose that aerosol sampling might be used in concert with direct swab sample surveillance in screening poultry markets for novel influenza viruses, such as H7N9.
Journal Article