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129
result(s) for
"Burke, Benjamin J."
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1,2-Difunctionalized bicyclo1.1.1pentanes
by
Spangler, Jillian E.
,
Montgomery, T. Patrick
,
He, Chi
in
Aromatic compounds
,
Benzene
,
Biological Assay
2021
The development of a versatile platform for the synthesis of 1,2-difunctionalized bicyclo[1.1.1]pentanes to potentially mimic ortho/meta-substituted arenes is described. The syntheses of useful building blocks bearing alcohol, amine, and carboxylic acid functional handles have been achieved from a simple common intermediate. Several ortho- and meta-substituted benzene analogs, as well as simple molecular matched pairs, have also been prepared using this platform. The results of in-depth ADME (absorption, distribution, metabolism, and excretion) investigations of these systems are presented, as well as computational studies which validate the ortho- or meta-character of these bioisosteres.
Journal Article
Resensitization to Crizotinib by the Lorlatinib ALK Resistance Mutation L1198F
2016
A resistance mutation (C1156Y) developed in a woman with anaplastic lymphoma kinase (
ALK
)-rearranged lung cancer who had a response to crizotinib. She then acquired resistance to lorlatinib. A lorlatinib resistance mutation (L1198F) led to resensitization to crizotinib.
Small-molecule tyrosine kinase inhibitors are standard therapies for several types of cancer, including chronic myeloid leukemia,
1
epidermal growth factor receptor (
EGFR
)–mutated non–small-cell lung cancer (NSCLC),
2
,
3
and
ALK
-rearranged NSCLC.
4
Although these therapies can be highly effective, resistance often develops. In patients whose disease relapses while they are receiving first-generation inhibitors, treatment with more potent and selective next-generation inhibitors can frequently reinduce durable responses.
5
–
9
The success of next-generation inhibitors in overcoming resistance has led to the common clinical practice of sequential treatment with increasingly potent and selective targeted therapies.
In NSCLC,
ALK
rearrangement identifies a subgroup of . . .
Journal Article
1,2-Difunctionalized bicyclo1.1.1pentanes: Long-sought-after mimetics for ortho/meta-substituted arenes
2021
The development of a versatile platform for the synthesis of 1,2-difunctionalized bicyclo[1.1.1]pentanes to potentially mimic ortho/meta-substituted arenes is described. The syntheses of useful building blocks bearing alcohol, amine, and carboxylic acid functional handles have been achieved from a simple common intermediate. Several ortho- and meta-substituted benzene analogs, as well as simple molecular matched pairs, have also been prepared using this platform. The results of in-depth ADME (absorption, distribution, metabolism, and excretion) investigations of these systems are presented, as well as computational studies which validate the ortho- or meta-character of these bioisosteres.The development of a versatile platform for the synthesis of 1,2-difunctionalized bicyclo[1.1.1]pentanes to potentially mimic ortho/meta-substituted arenes is described. The syntheses of useful building blocks bearing alcohol, amine, and carboxylic acid functional handles have been achieved from a simple common intermediate. Several ortho- and meta-substituted benzene analogs, as well as simple molecular matched pairs, have also been prepared using this platform. The results of in-depth ADME (absorption, distribution, metabolism, and excretion) investigations of these systems are presented, as well as computational studies which validate the ortho- or meta-character of these bioisosteres.
Journal Article
Multimodal nanoparticle imaging agents: design and applications
by
Archibald, Stephen J.
,
Cawthorne, Christopher
,
Burke, Benjamin P.
in
Drug delivery systems
,
Imaging techniques
,
Magnetic resonance
2017
Molecular imaging, where the location of molecules or nanoscale constructs can be tracked in the body to report on disease or biochemical processes, is rapidly expanding to include combined modality or multimodal imaging. No single imaging technique can offer the optimum combination of properties (e.g. resolution, sensitivity, cost, availability). The rapid technological advances in hardware to scan patients, and software to process and fuse images, are pushing the boundaries of novel medical imaging approaches, and hand-in-hand with this is the requirement for advanced and specific multimodal imaging agents. These agents can be detected using a selection from radioisotope, magnetic resonance and optical imaging, among others. Nanoparticles offer great scope in this area as they lend themselves, via facile modification procedures, to act as multifunctional constructs. They have relevance as therapeutics and drug delivery agents that can be tracked by molecular imaging techniques with the particular development of applications in optically guided surgery and as radiosensitizers. There has been a huge amount of research work to produce nanoconstructs for imaging, and the parameters for successful clinical translation and validation of therapeutic applications are now becoming much better understood. It is an exciting time of progress for these agents as their potential is closer to being realized with translation into the clinic. The coming 5-10 years will be critical, as we will see if the predicted improvement in clinical outcomes becomes a reality. Some of the latest advances in combination modality agents are selected and the progression pathway to clinical trials analysed.
This article is part of the themed issue ‘Challenges for chemistry in molecular imaging’.
Journal Article
Fine-regolith production on asteroids controlled by rock porosity
by
Bottke, W. F.
,
Deshapriya, J. D. P.
,
Rozitis, B.
in
639/33/445/215
,
639/33/445/848
,
Apollo asteroids
2021
Spacecraft missions have observed regolith blankets of unconsolidated subcentimetre particles on stony asteroids
1
–
3
. Telescopic data have suggested the presence of regolith blankets also on carbonaceous asteroids, including (101955) Bennu
4
and (162173) Ryugu
5
. However, despite observations of processes that are capable of comminuting boulders into unconsolidated materials, such as meteoroid bombardment
6
,
7
and thermal cracking
8
, Bennu and Ryugu lack extensive areas covered in subcentimetre particles
7
,
9
. Here we report an inverse correlation between the local abundance of subcentimetre particles and the porosity of rocks on Bennu. We interpret this finding to mean that accumulation of unconsolidated subcentimetre particles is frustrated where the rocks are highly porous, which appears to be most of the surface
10
. The highly porous rocks are compressed rather than fragmented by meteoroid impacts, consistent with laboratory experiments
11
,
12
, and thermal cracking proceeds more slowly than in denser rocks. We infer that regolith blankets are uncommon on carbonaceous asteroids, which are the most numerous type of asteroid
13
. By contrast, these terrains should be common on stony asteroids, which have less porous rocks and are the second-most populous group by composition
13
. The higher porosity of carbonaceous asteroid materials may have aided in their compaction and cementation to form breccias, which dominate the carbonaceous chondrite meteorites
14
.
The absence of fine regolith on the asteroid Bennu is due to the high porosity of its rocks, which compress rather than fragment after impacts and exhibit slow thermal cracking.
Journal Article
A myelin-related transcriptomic profile is shared by Pitt–Hopkins syndrome models and human autism spectrum disorder
2020
Autism spectrum disorder (ASD) is genetically heterogeneous with convergent symptomatology, suggesting common dysregulated pathways. In this study, we analyzed brain transcriptional changes in five mouse models of Pitt–Hopkins syndrome (PTHS), a syndromic form of ASD caused by mutations in the TCF4 gene, but not the TCF7L2 gene. Analyses of differentially expressed genes (DEGs) highlighted oligodendrocyte (OL) dysregulation, which we confirmed in two additional mouse models of syndromic ASD (Ptenm3m4/m3m4 and Mecp2tm1.1Bird). The PTHS mouse models showed cell-autonomous reductions in OL numbers and myelination, functionally confirming OL transcriptional signatures. We also integrated PTHS mouse model DEGs with human idiopathic ASD postmortem brain RNA-sequencing data and found significant enrichment of overlapping DEGs and common myelination-associated pathways. Notably, DEGs from syndromic ASD mouse models and reduced deconvoluted OL numbers distinguished human idiopathic ASD cases from controls across three postmortem brain data sets. These results implicate disruptions in OL biology as a cellular mechanism in ASD pathology.The authors identify an impaired myelination signature from the brains of mouse models of Pitt–Hopkins syndrome and show that it is shared in the postmortem brains of people with autism.
Journal Article
Cholesterol Efflux Capacity, High-Density Lipoprotein Function, and Atherosclerosis
by
Burke, Megan F
,
de la Llera-Moya, Margarita
,
Rader, Daniel J
in
Aged
,
Atherosclerosis (general aspects, experimental research)
,
Biological and medical sciences
2011
In a cohort of healthy volunteers, cholesterol efflux capacity was correlated with carotid intima–media thickness. In a cohort of patients with or without angiographically confirmed coronary disease, cholesterol efflux capacity predicted coronary disease status.
A robust inverse association between the level of high-density lipoprotein (HDL) cholesterol and the risk of cardiovascular disease has fostered intensive research seeking to target HDL metabolism for therapeutic gain.
1
,
2
However, some findings have called into question the hypothesis that pharmacologic increases in HDL cholesterol levels are necessarily beneficial. Several therapies, including nicotinic acid and fibric acid derivatives, increase HDL cholesterol levels, but linking these increases to clinical risk reduction has proved challenging.
3
,
4
Most strikingly, an inhibitor of cholesteryl ester transfer protein (CETP) was associated with an increase in the number of cardiovascular events, despite a 72% increase . . .
Journal Article
The rise of novelty in ecosystems
by
Marin-Spiotta, Erika
,
Carter, Sarah K.
,
Burke, Kevin D.
in
Adaptation, Physiological
,
Animals
,
Anthropocene
2015
Rapid and ongoing change creates novelty in ecosystems everywhere, both when comparing contemporary systems to their historical baselines, and predicted future systems to the present. However, the level of novelty varies greatly among places. Here we propose a formal and quantifiable definition of abiotic and biotic novelty in ecosystems, map abiotic novelty globally, and discuss the implications of novelty for the science of ecology and for biodiversity conservation. We define novelty as the degree of dissimilarity of a system, measured in one or more dimensions relative to a reference baseline, usually defined as either the present or a time window in the past. In this conceptualization, novelty varies in degree, it is multidimensional, can be measured, and requires a temporal and spatial reference. This definition moves beyond prior categorical definitions of novel ecosystems, and does not include human agency, self-perpetuation, or irreversibility as criteria. Our global assessment of novelty was based on abiotic factors (temperature, precipitation, and nitrogen deposition) plus human population, and shows that there are already large areas with high novelty today relative to the early 20th century, and that there will even be more such areas by 2050. Interestingly, the places that are most novel are often not the places where absolute changes are largest; highlighting that novelty is inherently different from change. For the ecological sciences, highly novel ecosystems present new opportunities to test ecological theories, but also challenge the predictive ability of ecological models and their validation. For biodiversity conservation, increasing novelty presents some opportunities, but largely challenges. Conservation action is necessary along the entire continuum of novelty, by redoubling efforts to protect areas where novelty is low, identifying conservation opportunities where novelty is high, developing flexible yet strong regulations and policies, and establishing long-term experiments to test management approaches. Meeting the challenge of novelty will require advances in the science of ecology, and new and creative conservation approaches.
Journal Article
Snake River sockeye and Chinook salmon in a changing climate: Implications for upstream migration survival during recent extreme and future climates
by
Burke, Brian J.
,
Wiesebron, Lauren E.
,
Crozier, Lisa G.
in
Animal behavior
,
Anthropogenic climate changes
,
Anthropogenic factors
2020
In 2015, the Pacific marine heat wave, low river flows, and record high water temperatures in the Columbia River Basin contributed to a near-complete failure of the adult migration of endangered Snake River sockeye salmon (Oncorhynchus nerka, NOAA Fisheries 2016). These extreme weather events may become the new normal due to anthropogenic climate change, with catastrophic consequences for endangered species. Existing anthropogenic pressures may amplify vulnerability to climate change, but these potential synergies have rarely been quantified. We examined factors affecting survival of endangered sockeye (Oncorhynchus nerka) and threatened Chinook salmon (O. tshawytscha) as they migrated upstream through eight dams and reservoirs to spawning areas in the Snake River Basin. Our extensive database included histories of 17,279 individual fish that migrated since 2004. A comparison between conditions in 2015 and daily temperatures and flows in a regulated basin forced by output from global climate models showed that 2015 did have many characteristics of projected future mean conditions. To evaluate potential salmon responses, we modeled migration timing and apparent survival under historical and future climate scenarios (2040s). For Chinook salmon, adult survival from the first dam encountered to spawning grounds dropped by 4-15%, depending on the climate scenario. For sockeye, survival dropped by ~80% from their already low levels. Through sensitivity analyses, we observed that the adult sockeye migration would need to shift more than 2 weeks earlier than predicted to maintain survival rates typical of those seen during 2008-2017. Overall, the greater impacts of climate change on adult sockeye compared with adult Chinook salmon reflected differences in life history and environmental sensitivities, which were compounded for sockeye by larger effect sizes from other anthropogenic factors. Compared with Chinook, sockeye was more negatively affected by a history of juvenile transportation and by similar temperatures and flows. The largest changes in temperature and flow were projected to be upstream from the hydrosystem, where direct mitigation through hydrosystem management is not an option. Unfortunately, Snake River sockeye have likely lost much of their adaptive capacity with the loss of the wild population. Further work exploring habitat restoration or additional mitigation actions is urgently needed.
Journal Article
Recommendations for performing, interpreting and reporting hydrogen deuterium exchange mass spectrometry (HDX-MS) experiments
2019
Hydrogen deuterium exchange mass spectrometry (HDX-MS) is a powerful biophysical technique being increasingly applied to a wide variety of problems. As the HDX-MS community continues to grow, adoption of best practices in data collection, analysis, presentation and interpretation will greatly enhance the accessibility of this technique to nonspecialists. Here we provide recommendations arising from community discussions emerging out of the first International Conference on Hydrogen-Exchange Mass Spectrometry (IC-HDX; 2017). It is meant to represent both a consensus viewpoint and an opportunity to stimulate further additions and refinements as the field advances.
Journal Article