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"Butz, A"
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Disentangling chlorophyll fluorescence from atmospheric scattering effects in O2 A-band spectra of reflected sun-light
2011
Global retrieval of solar induced fluorescence emitted by terrestrial vegetation can provide an unprecedented measure for photosynthetic efficiency. The GOSAT (JAXA, launched Feb. 2009) and OCO‐2 (NASA, to be launched 2013) satellites record high‐resolution spectra in the O2 A‐band region, overlapping part of the chlorophyll fluorescence spectrum. We show that fluorescence cannot be unambiguously discriminated from atmospheric scattering effects using O2 absorption lines. This can cause systematic biases in retrieved scattering parameters (aerosol optical thickness, aerosol height, surface pressure, surface albedo) if fluorescence is neglected. Hence, we demonstrate an efficient alternative fluorescence least‐squares retrieval method based solely on strong Fraunhofer lines in the vicinity of the O2 A‐band, disentangling fluorescence from scattering effects. Not only does the Fraunhofer line fit produce a more accurate estimate of fluorescence emission, but it also allows improved retrievals of atmospheric aerosols from the O2 A‐band.
Journal Article
Global CO2 fluxes estimated from GOSAT retrievals of total column CO2
2013
We present one of the first estimates of the global distribution of CO2 surface fluxes using total column CO2 measurements retrieved by the SRON-KIT RemoTeC algorithm from the Greenhouse gases Observing SATellite (GOSAT). We derive optimized fluxes from June 2009 to December 2010. We estimate fluxes from surface CO2 measurements to use as baselines for comparing GOSAT data-derived fluxes. Assimilating only GOSAT data, we can reproduce the observed CO2 time series at surface and TCCON sites in the tropics and the northern extra-tropics. In contrast, in the southern extra-tropics GOSAT XCO2 leads to enhanced seasonal cycle amplitudes compared to independent measurements, and we identify it as the result of a land-sea bias in our GOSAT XCO2 retrievals. A bias correction in the form of a global offset between GOSAT land and sea pixels in a joint inversion of satellite and surface measurements of CO2 yields plausible global flux estimates which are more tightly constrained than in an inversion using surface CO2 data alone. We show that assimilating the bias-corrected GOSAT data on top of surface CO2 data (a) reduces the estimated global land sink of CO2 , and (b) shifts the terrestrial net uptake of carbon from the tropics to the extra-tropics. It is concluded that while GOSAT total column CO2 provide useful constraints for source-sink inversions, small spatiotemporal biases - beyond what can be detected using current validation techniques - have serious consequences for optimized fluxes, even aggregated over continental scales.
Journal Article
Data-Driven Accelerated Parameter Identification for Chaboche-Type Visco-Plastic Material Models to Describe the Relaxation Behavior of Copper Alloys
by
Weber, M.
,
Norouzi, E.
,
Helm, D.
in
Algorithms
,
Alloys
,
Biomedical Engineering and Bioengineering
2024
Background
Calibrating material models to experimental measurements is crucial for realistic computational analysis of components. For complex material models, however, optimization-based identification procedures can become time-consuming, particularly if the optimization problem is ill-posed.
Objective
The objective of this paper is to assess the feasibility of using machine learning to identify the parameters of a Chaboche-type material model that describes copper alloys. Specifically, we apply and analyze this identification approach using short-term uniaxial relaxation tests on a C19010 copper alloy.
Methods
A genetic algorithm forms the basis for identifying the parameters of the Chaboche-type material model. The approach is accelerated by replacing the numerical simulation of the experimental setup by a neural network surrogate. The neural networks-based approach is compared against a classic approach using both, synthetic and experimental data.
Results
The results show that on the one hand, a sufficiently accurate identification of the material model parameters can be achieved by a classic but time-consuming genetic algorithm. On the other hand, it is shown that machine learning enables a much more time-efficient identification procedure, however, suffering from the ill-posedness of the identification problem.
Conclusion
Compared to classic parameter identification approaches, machine learning techniques can significantly accelerate the identification procedure for parameters of Chaboche-type material models with acceptable loss of accuracy.
Journal Article
Inverse modelling of CH4 emissions for 2010-2011 using different satellite retrieval products from GOSAT and SCIAMACHY
2015
At the beginning of 2009 new space-borne observations of dry-air column-averaged mole fractions of atmospheric methane (XCH4) became available from the Thermal And Near infrared Sensor for carbon Observations-Fourier Transform Spectrometer (TANSO-FTS) instrument on board the Greenhouse Gases Observing SATellite (GOSAT). Until April 2012 concurrent {methane (CH4) retrievals} were provided by the SCanning Imaging Absorption spectroMeter for Atmospheric CartograpHY (SCIAMACHY) instrument on board the ENVironmental SATellite (ENVISAT). The GOSAT and SCIAMACHY XCH4 retrievals can be compared during the period of overlap. We estimate monthly average CH4 emissions between January 2010 and December 2011, using the TM5-4DVAR inverse modelling system. In addition to satellite data, high-accuracy measurements from the Cooperative Air Sampling Network of the National Oceanic and Atmospheric Administration Earth System Research Laboratory (NOAA ESRL) are used, providing strong constraints on the remote surface atmosphere. We discuss five inversion scenarios that make use of different GOSAT and SCIAMACHY XCH4 retrieval products, including two sets of GOSAT proxy retrievals processed independently by the Netherlands Institute for Space Research (SRON)/Karlsruhe Institute of Technology (KIT), and the University of Leicester (UL), and the RemoTeC \"Full-Physics\" (FP) XCH4 retrievals available from SRON/KIT. The GOSAT-based inversions show significant reductions in the root mean square (rms) difference between retrieved and modelled XCH4, and require much smaller bias corrections compared to the inversion using SCIAMACHY retrievals, reflecting the higher precision and relative accuracy of the GOSAT XCH4. Despite the large differences between the GOSAT and SCIAMACHY retrievals, 2-year average emission maps show overall good agreement among all satellite-based inversions, with consistent flux adjustment patterns, particularly across equatorial Africa and North America. Over North America, the satellite inversions result in a significant redistribution of CH4 emissions from North-East to South-Central United States. This result is consistent with recent independent studies suggesting a systematic underestimation of CH4 emissions from North American fossil fuel sources in bottom-up inventories, likely related to natural gas production facilities. Furthermore, all four satellite inversions yield lower CH4 fluxes across the Congo basin compared to the NOAA-only scenario, but higher emissions across tropical East Africa. The GOSAT and SCIAMACHY inversions show similar performance when validated against independent shipboard and aircraft observations, and XCH4 retrievals available from the Total Carbon Column Observing Network (TCCON).
Journal Article
Unique North American isolates of severe metastatic hypervirulent Klebsiella pneumoniae strain infections with hepatic abscesses seen in young patients within Texas
2025
Hypervirulent Klebsiella pneumoniae (hvKp) infections have principally been identified in Asia. Within a two-month period, two patients between the ages of 30 to 50 years old presented to a tertiary referral hospital in Texas with septic shock, hepatic abscess, and septic thrombophlebitis. Blood cultures were positive for Klebsiella pneumoniae (isolates 2020CK-00441 and 2021CK-00720 respectively). The first patient survived after a prolonged hospital course while the second patient expired.
Describe the clinical presentation of these two patients. Perform whole genome sequencing and bioinformatic analysis to evaluate potential outbreak of specific hvKp bacteria isolates.
Whole genome sequencing was performed using both paired-end Illumina MiSeq and nanopore sequencing to obtain a Completed genome for both isolates.
2020CK-00441 belonged to ST23 type while 2021CK-00720 was a ST65 type isolate. Kleborate analyses predicted with high confidence both isolates were hvKp. Phylogenetic analyses showed the two strains are not closely related to each other nor to any known hvKp isolates reported. Both isolates had yersiniabactin, colibactin, aerobactin and salmochelin producing loci which likely confer these isolates hvKp phenotype. 2020CK-00441 and 2021CK-00720 had a unique pK2044 like plasmid.
HvKp strains capable of causing devastating metastatic septic infections have emerged in Texas. These isolates are unique compared to other hvKp strains globally. Country-wide surveillance and whole genome sequencing of these strains is essential to prevent a major public health emergency in the USA.
Journal Article
Spectrometric imaging of sub-hourly methane emission dynamics from coal mine ventilation
2023
Anthropogenic methane (CH 4 ) emissions contribute significantly to the current radiative forcing driving climate change. Localized CH 4 sources such as occurring in the fossil fuel industry contribute a substantial share to the anthropogenic emission total. The temporal dynamics of such emissions is largely unresolved and unaccounted for when using atmospheric measurements by satellites, aircraft, and ground-based instruments to monitor emission rates and verify reported numbers. Here, we demonstrate the usage of a ground-based imaging spectrometer for quantifying the CH 4 emission dynamics of a ventilation facility of a coal mine in the Upper Silesian Coal Basin, Poland. To this end, we deployed the imaging spectrometer at roughly 1 km distance from the facility and collected plume images of CH 4 column enhancements during the sunlit hours of four consecutive days in June 2022. Together with wind information from a co-deployed wind-lidar, we inferred CH 4 emission rates with roughly 1 min resolution. Daily average emission rates ranged between 1.39 ± 0.19 and 4.44 ± 0.76 tCH 4 h −1 , 10 min averages ranged between (min) 0.82 and (max) 5.83 tCH 4 h −1 , and puff-like events caused large variability on time scales below 15 min. Thus, to monitor CH 4 emissions from such sources, it requires measurement techniques such as the imaging spectrometer evaluated here that can capture emission dynamics on short time scales.
Journal Article
New criterion for evaluating plastic anisotropy in sheet thickness direction
2025
In sheet metal forming simulations, an increasing number of anisotropic yield functions take account of the full stress state, i.e. the plastic anisotropy associated with the in-plane and out-of-plane behaviour. However, the benefits of incorporating out-of-plane anisotropy into sheet metal forming simulations remain unclear. This paper analyses the effect of out-of-plane anisotropy on sheet metal forming simulations and proposes a new criterion for its evaluation. To this end, a parametric study of a cylindrical deep drawing/embossing process with varying punch-die clearances and tool radii was conducted. The results indicate that the effect of out-of-plane anisotropy is correlated with both the clearance and the radius, resulting in significant variations in the local stress as well as the local plastic strain fields. Furthermore, the results support the overall applicability of the new criterion for evaluating the sensitivity of sheet metal forming processes to out-of-plane anisotropy.
Journal Article
Toward accurate CO2 and CH4 observations from GOSAT
2011
The column‐average dry air mole fractions of atmospheric carbon dioxide and methane and are inferred from observations of backscattered sunlight conducted by the Greenhouse gases Observing SATellite (GOSAT). Comparing the first year of GOSAT retrievals over land with colocated ground‐based observations of the Total Carbon Column Observing Network (TCCON), we find an average difference (bias) of −0.05% and −0.30% for and with a station‐to‐station variability (standard deviation of the bias) of 0.37% and 0.26% among the 6 considered TCCON sites. The root‐mean square deviation of the bias‐corrected satellite retrievals from colocated TCCON observations amounts to 2.8 ppm for and 0.015 ppm for Without any data averaging, the GOSAT records reproduce general source/sink patterns such as the seasonal cycle of suggesting the use of the satellite retrievals for constraining surface fluxes. Key Points Improved quality of XCO2 and XCH4 satellite retrievals due to refined methods Source/sink patterns are dentifiable in the data record without averaging Constrained surface flux modeling is the logical next step
Journal Article
IL-15 triggers an antiapoptotic pathway in human intraepithelial lymphocytes that is a potential new target in celiac disease–associated inflammation and lymphomagenesis
by
Rahmi, Gabriel
,
Verkarre, Virginie
,
Mention, Jean-Jacques
in
Adult
,
Apoptosis
,
Apoptosis - drug effects
2010
Enteropathy-associated T cell lymphoma is a severe complication of celiac disease (CD). One mechanism suggested to underlie its development is chronic exposure of intraepithelial lymphocytes (IELs) to potent antiapoptotic signals initiated by IL-15, a cytokine overexpressed in the enterocytes of individuals with CD. However, the signaling pathway by which IL-15 transmits these antiapoptotic signals has not been firmly established. Here we show that the survival signals delivered by IL-15 to freshly isolated human IELs and to human IEL cell lines derived from CD patients with type II refractory CD (RCDII) - a clinicopathological entity considered an intermediary step between CD and enteropathy-associated T cell lymphoma - depend on the antiapoptotic factors Bcl-2 and/or Bcl-xL. The signals also required IL-15Rbeta, Jak3, and STAT5, but were independent of PI3K, ERK, and STAT3. Consistent with these data, IELs from patients with active CD and RCDII contained increased amounts of Bcl-xL, phospho-Jak3, and phospho-STAT5. Furthermore, incubation of patient duodenal biopsies with a fully humanized human IL-15-specific Ab effectively blocked Jak3 and STAT5 phosphorylation. In addition, treatment with this Ab induced IEL apoptosis and wiped out the massive IEL accumulation in mice overexpressing human IL-15 in their gut epithelium. Together, our results delineate the IL-15-driven survival pathway in human IELs and demonstrate that IL-15 and its downstream effectors are meaningful therapeutic targets in RCDII.
Journal Article