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353 result(s) for "CSIRO"
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Positive energy homes : creating passive houses for better living
A guide to how positive energy living can be achieved, through homes that power themselves and empower their occupants. Positive energy homes enable people to live healthy and comfortable lives with energy left over to share. Creating a house you love that produces surplus energy is surprisingly easy with a thorough understanding of how buildings work and careful attention to detail in construction. The Passive House standard, with its well-proven track record, forms the basis for creating positive energy homes. This book explores the Passive House 'fabric first' approach, as well as the science and practicalities of effective ventilation strategies, smart options for heating and cooling, daylight harvesting, and efficient lighting and appliances. Positive Energy Homes provides home owners world-wide, architects and builders with an understanding of the principles and technical details of building these houses.
The Potential Distribution of Invading Helicoverpa armigera in North America: Is It Just a Matter of Time?
Helicoverpa armigera has recently invaded South and Central America, and appears to be spreading rapidly. We update a previously developed potential distribution model to highlight the global invasion threat, with emphasis on the risks to the United States. The continued range expansion of H. armigera in Central America is likely to change the invasion threat it poses to North America qualitatively, making natural dispersal from either the Caribbean islands or Mexico feasible. To characterise the threat posed by H. armigera, we collated the value of the major host crops in the United States growing within its modelled potential range, including that area where it could expand its range during favourable seasons. We found that the annual value of crops that would be exposed to H. armigera totalled approximately US$78 billion p.a., with US$843 million p.a. worth growing in climates that are optimal for the pest. Elsewhere, H. armigera has developed broad-spectrum pesticide resistance; meaning that if it invades the United States, protecting these crops from significant production impacts could be challenging. It may be cost-effective to undertake pre-emptive biosecurity activities such as slowing the spread of H. armigera throughout the Americas, improving the system for detecting H. armigera, and methods for rapid identification, especially distinguishing between H. armigera, H. zea and potential H. armigera x H. zea hybrids. Developing biological control programs, especially using inundative techniques with entomopathogens and parasitoids could slow the spread of H. armigera, and reduce selective pressure for pesticide resistance. The rapid spread of H. armigera through South America into Central America suggests that its spread into North America is a matter of time. The likely natural dispersal routes preclude aggressive incursion responses, emphasizing the value of preparatory communication with agricultural producers in areas suitable for invasion by H. armigera.
A five-transgene cassette confers broad-spectrum resistance to a fungal rust pathogen in wheat
Breeding wheat with durable resistance to the fungal pathogen Puccinia graminis f. sp. tritici ( Pgt ), a major threat to cereal production, is challenging due to the rapid evolution of pathogen virulence. Increased durability and broad-spectrum resistance can be achieved by introducing more than one resistance gene, but combining numerous unlinked genes by breeding is laborious. Here we generate polygenic Pgt resistance by introducing a transgene cassette of five resistance genes into bread wheat as a single locus and show that at least four of the five genes are functional. These wheat lines are resistant to aggressive and highly virulent Pgt isolates from around the world and show very high levels of resistance in the field. The simple monogenic inheritance of this multigene locus greatly simplifies its use in breeding. However, a new Pgt isolate with virulence to several genes at this locus suggests gene stacks will need strategic deployment to maintain their effectiveness. Combining fungal-resistance genes into a single cassette enables the generation of highly resistant wheat lines.
Silver lining to a climate crisis in multiple prospects for alleviating crop waterlogging under future climates
Extreme weather events threaten food security, yet global assessments of impacts caused by crop waterlogging are rare. Here we first develop a paradigm that distils common stress patterns across environments, genotypes and climate horizons. Second, we embed improved process-based understanding into a farming systems model to discern changes in global crop waterlogging under future climates. Third, we develop avenues for adapting cropping systems to waterlogging contextualised by environment. We find that yield penalties caused by waterlogging increase from 3–11% historically to 10–20% by 2080, with penalties reflecting a trade-off between the duration of waterlogging and the timing of waterlogging relative to crop stage. We document greater potential for waterlogging-tolerant genotypes in environments with longer temperate growing seasons (e.g., UK, France, Russia, China), compared with environments with higher annualised ratios of evapotranspiration to precipitation (e.g., Australia). Under future climates, altering sowing time and adoption of waterlogging-tolerant genotypes reduces yield penalties by 18%, while earlier sowing of winter genotypes alleviates waterlogging by 8%. We highlight the serendipitous outcome wherein waterlogging stress patterns under present conditions are likely to be similar to those in the future, suggesting that adaptations for future climates could be designed using stress patterns realised today.
Genomics accelerated isolation of a new stem rust avirulence gene–wheat resistance gene pair
Stem rust caused by the fungus Puccinia graminis f. sp. tritici (Pgt) is a devastating disease of the global staple crop wheat. Although this disease was largely controlled in the latter half of the twentieth century, new virulent strains of Pgt, such as Ug99, have recently evolved1,2. These strains have caused notable losses worldwide and their continued spread threatens global wheat production. Breeding for disease resistance provides the most cost-effective control of wheat rust diseases3. A number of rust resistance genes have been characterized in wheat and most encode immune receptors of the nucleotide-binding leucine-rich repeat (NLR) class4, which recognize pathogen effector proteins known as avirulence (Avr) proteins5. However, only two Avr genes have been identified in Pgt so far, AvrSr35 and AvrSr50 (refs. 6,7), and none in other cereal rusts8,9. The Sr27 resistance gene was first identified in a wheat line carrying an introgression of the 3R chromosome from Imperial rye10. Although not deployed widely in wheat, Sr27 is widespread in the artificial crop species Triticosecale (triticale), which is a wheat–rye hybrid and is a host for Pgt11,12. Sr27 is effective against Ug99 (ref. 13) and other recent Pgt strains14,15. Here, we identify both the Sr27 gene in wheat and the corresponding AvrSr27 gene in Pgt and show that virulence to Sr27 can arise experimentally and in the field through deletion mutations, copy number variation and expression level polymorphisms at the AvrSr27 locus.
The Bos taurus–Bos indicus balance in fertility and milk related genes
Numerical approaches to high-density single nucleotide polymorphism (SNP) data are often employed independently to address individual questions. We linked independent approaches in a bioinformatics pipeline for further insight. The pipeline driven by heterozygosity and Hardy-Weinberg equilibrium (HWE) analyses was applied to characterize Bos taurus and Bos indicus ancestry. We infer a gene co-heterozygosity network that regulates bovine fertility, from data on 18,363 cattle with genotypes for 729,068 SNP. Hierarchical clustering separated populations according to Bos taurus and Bos indicus ancestry. The weights of the first principal component were subjected to Normal mixture modelling allowing the estimation of a gene's contribution to the Bos taurus-Bos indicus axis. We used deviation from HWE, contribution to Bos indicus content and association to fertility traits to select 1,284 genes. With this set, we developed a co-heterozygosity network where the group of genes annotated as fertility-related had significantly higher Bos indicus content compared to other functional classes of genes, while the group of genes associated with milk production had significantly higher Bos taurus content. The network analysis resulted in capturing novel gene associations of relevance to bovine domestication events. We report transcription factors that are likely to regulate genes associated with cattle domestication and tropical adaptation. Our pipeline can be generalized to any scenarios where population structure requires scrutiny at the molecular level, particularly in the presence of a priori set of genes known to impact a phenotype of evolutionary interest such as fertility.
Agricultural diversification for crop yield stability: a smallholder adaptation strategy to climate variability in Ethiopia
Abstract Climate variability threatens food system stability, particularly among smallholders in developing countries who depend on rainfed agriculture. Farm diversification could be a relevant adaptation strategy in this context as a greater number of species or a more even distribution of crops is postulated to have a stabilizing effect on farm output as compared to a homogeneous farm. In this study, we aimed to explore relationships between climate variability, agricultural diversity, and crop yield stability. We used agriculture-focused panel data from Ethiopian households surveyed over four waves from 2011 to 2018 and two climate datasets to derive measures of long- and short-term climate variability. In a twofold analytical approach, we used mixed effects models to separately model (i) farm richness and pastoralism prevalence with climate variability as predictors, and (ii) crop yield stability with diversity, farm input, and climate characteristics as predictors. We found that farm diversity is highest in areas with high temperature variability, or low rainfall variability. This held even when excluding pastoralist households, who have naturally lower diversity. We further showed that pastoralism is least common in areas with high temperature variability and low month-to-month rainfall variability. Both crop richness and crop evenness positively affected temporal yield stability, with each showing a greater effect than irrigation, fertilizer, and pesticide usage. Together, these findings suggest that shifts in typical ranges of climate variability could destabilize farm-level crop yield for smallholders by limiting diversification opportunities. Our findings highlight the need for researchers and policymakers to consider not only the direct effects of climate variability on crop yield, but also its indirect effects on yield stability caused by increasingly limited adaptation choices.
Engineering greater aluminium resistance in wheat by over-expressing TaALMT1
BACKGROUND AND AIMS: Expected increases in world population will continue to make demands on agricultural productivity and food supply. These challenges will only be met by increasing the land under cultivation and by improving the yields obtained on existing farms. Genetic engineering can target key traits to improve crop yields and to increase production on marginal soils. Soil acidity is a major abiotic stress that limits plant production worldwide. The goal of this study was to enhance the acid soil tolerance of wheat by increasing its resistance to Al³⁺ toxicity. METHODS: Particle bombardment was used to transform wheat with TaALMT1, the Al³⁺ resistance gene from wheat, using the maize ubiquitin promoter to drive expression. TaALMT1 expression, malate efflux and Al³⁺ resistance were measured in the T₁ and T₂ lines and compared with the parental line and an Al³⁺-resistant reference genotype, ET8. KEY RESULTS: Nine T₂ lines showed increased TaALMT1 expression, malate efflux and Al³⁺ resistance when compared with untransformed controls and null segregant lines. Some T₂ lines displayed greater Al³⁺ resistance than ET8 in both hydroponic and soil experiments. CONCLUSIONS: The Al³⁺ resistance of wheat was increased by enhancing TaALMT1 expression with biotechnology. This is the first report of a major food crop being stably transformed for greater Al³⁺ resistance. Transgenic strategies provide options for increasing food supply on acid soils.
Transcriptional response to an alternative diet on liver, muscle, and rumen of beef cattle
Feed cost represents a major economic determinant within cattle production, amounting to an estimated 75% of the total variable costs. Consequently, comprehensive approaches such as optimizing feed utilization through alternative feed sources, alongside the selection of feed-efficient animals, are of great significance. Here, we investigate the effect of two diets, traditional corn-grain fed and alternative by-product based, on 14 phenotypes related to feed, methane emission and production efficiency and on multi-tissue transcriptomics data from liver, muscle, and rumen wall, derived from 52 Nellore bulls, 26 on each diet. To this end, diets were contrasted at the level of phenotype, gene expression, and gene-phenotype network connectivity. As regards the phenotypic level, at a P value < 0.05, significant differences were found in favour of the alternative diet for average daily weight gain at finishing, dry matter intake at finishing, methane emission, carcass yield and subcutaneous fat thickness at the rib-eye muscle area. In terms of the transcriptional level of the 14,776 genes expressed across the examined tissues, we found 487, 484, and 499 genes differentially expressed due to diet in liver, muscle, and rumen, respectively ( P value < 0.01). To explore differentially connected phenotypes across both diet-based networks, we focused on the phenotypes with the largest change in average number of connections within diets and tissues, namely methane emission and carcass yield, highlighting, in particular, gene expression changes involving SREBF2 , and revealing the largest differential connectivity in rumen and muscle, respectively. Similarly, from examination of differentially connected genes across diets, the top-ranked most differentially connected regulators within each tissue were MEOX1 , PTTG1, and BASP1 in liver, muscle, and rumen, respectively. Changes in gene co-expression patterns suggest activation or suppression of specific biological processes and pathways in response to dietary interventions, consequently impacting the phenotype. The identification of genes that respond differently to diets and their associated phenotypic effects serves as a crucial stepping stone for further investigations, aiming to build upon our discoveries. Ultimately, such advancements hold the promise of improving animal welfare, productivity, and sustainability in livestock farming.
Complex multiple introductions drive fall armyworm invasions into Asia and Australia
The fall armyworm (FAW) Spodoptera frugiperda is thought to have undergone a rapid 'west-toeast' spread since 2016 when it was first identified in western Africa. Between 2018 and 2020, it was recorded from South Asia (SA), Southeast Asia (SEA), East Asia (EA), and Pacific/Australia (PA). Population genomic analyses enabled the understanding of pathways, population sources, and gene flow in this notorious agricultural pest species. Using neutral single nucleotide polymorphic (SNP) DNA markers, we detected genome introgression that suggested most populations in this study were overwhelmingly C-and R-strain hybrids (n = 252/262). SNP and mitochondrial DNA markers identified multiple introductions that were most parsimoniously explained by anthropogenic-assisted spread, i.e., associated with international trade of live/fresh plants and plant products, and involved 'bridgehead populations' in countries to enable successful pest establishment in neighbouring countries. Distinct population genomic signatures between Myanmar and China do not support the 'African origin spread' nor the 'Myanmar source population to China' hypotheses. Significant genetic differentiation between populations from different Australian states supported multiple pathways involving distinct SEA populations. Our study identified Asia as a biosecurity hotspot and a FAW genetic melting pot, and demonstrated the use of genome analysis to disentangle preventable human-assisted pest introductions from unpreventable natural pest spread. Movements of exotic arthropods are increasingly being linked with global agricultural and horticultural trade 1-6 , Europhyte 2018), tourism (e.g., 7), and as hitchhiker pests on aircraft 8 and vessels (e.g., 9). These exotic arthropods can have significant negative impact on agricultural production 10-13 , and the environments (e.g., 2,14). Good phytosanitary practice together with robust biosecurity preparedness can lower the risk and help mitigate the effects of these invasive species. Invasive arthropods, especially species of agricultural importance, may also introduce novel genotypes (e.g., insecticide resistance genes and alleles; 15-17) into related native populations through introgression and hybridisation, or into established populations of invasive species, thereby increasing their genomic diversity and further complicating pest management (e.g., 15,18). The fall armyworm (FAW; Spodoptera frugiperda), a highly polyphagous noctuid moth native to the tropical and subtropical regions of the Americas, was officially reported in Western Africa in early 2016 19 , followed