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"Caballero, R"
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Storm track processes and the opposing influences of climate change
2016
Extratropical storms contribute to precipitation, wind and temperature extremes. A synthesis of the influences of a changing climate on storm tracks reveals competing effects on meridional temperature gradients, which make projections difficult.
Extratropical cyclones are storm systems that are observed to travel preferentially within confined regions known as storm tracks. They contribute to precipitation, wind and temperature extremes in mid-latitudes. Cyclones tend to form where surface temperature gradients are large, and the jet stream influences their speed and direction of travel. Storm tracks shape the global climate through transport of energy and momentum. The intensity and location of storm tracks varies seasonally, and in response to other natural variations, such as changes in tropical sea surface temperature. A hierarchy of numerical models of the atmosphere–ocean system — from highly idealized to comprehensive — has been used to study and predict responses of storm tracks to anthropogenic climate change. The future position and intensity of storm tracks depend on processes that alter temperature gradients. However, different processes can have opposing influences on temperature gradients, which leads to a tug of war on storm track responses and makes future projections more difficult. For example, as climate warms, surface shortwave cloud radiative changes increase the Equator-to-pole temperature gradient, but at the same time, longwave cloud radiative changes reduce this gradient. Future progress depends on understanding and accurately quantifying the relative influence of such processes on the storm tracks.
Journal Article
The early Eocene equable climate problem revisited
2011
The early Eocene \"equable climate problem\", i.e. warm extratropical annual mean and above-freezing winter temperatures evidenced by proxy records, has remained as one of the great unsolved problems in paleoclimate. Recent progress in modeling and in paleoclimate proxy development provides an opportunity to revisit this problem to ascertain if the current generation of models can reproduce the past climate features without extensive modification. Here we have compiled early Eocene terrestrial temperature data and compared with climate model results using a consistent and rigorous methodology. We test the hypothesis that equable climates can be explained simply as a response to increased greenhouse gas forcing within the framework of the atmospheric component of the Community Climate System Model (version 3), a climate model in common use for predicting future climate change. We find that, with suitably large radiative forcing, the model and data are in general agreement for annual mean and cold month mean temperatures, and that the pattern of high latitude amplification recorded by proxies can be largely, but not perfectly, reproduced.
Journal Article
Ankyrin-G regulates forebrain connectivity and network synchronization via interaction with GABARAP
2020
GABAergic circuits are critical for the synchronization and higher order function of brain networks. Defects in this circuitry are linked to neuropsychiatric diseases, including bipolar disorder, schizophrenia, and autism. Work in cultured neurons has shown that ankyrin-G plays a key role in the regulation of GABAergic synapses on the axon initial segment and somatodendritic domain of pyramidal neurons, where it interacts directly with the GABAA receptor-associated protein (GABARAP) to stabilize cell surface GABAA receptors. Here, we generated a knock-in mouse model expressing a mutation that abolishes the ankyrin-G/GABARAP interaction (Ank3 W1989R) to understand how ankyrin-G and GABARAP regulate GABAergic circuitry in vivo. We found that Ank3 W1989R mice exhibit a striking reduction in forebrain GABAergic synapses resulting in pyramidal cell hyperexcitability and disruptions in network synchronization. In addition, we identified changes in pyramidal cell dendritic spines and axon initial segments consistent with compensation for hyperexcitability. Finally, we identified the ANK3 W1989R variant in a family with bipolar disorder, suggesting a potential role of this variant in disease. Our results highlight the importance of ankyrin-G in regulating forebrain circuitry and provide novel insights into how ANK3 loss-of-function variants may contribute to human disease.
Journal Article
Cosmic-ray yield and response functions in the atmosphere
2012
Since the middle 1950s, neutron monitors have provided a continuous record of the intensity of secondary atmospheric particles produced by the primary cosmic radiation above the atmosphere. The number of counts due to these secondary particles is related to the primary spectrum above the atmosphere through the so‐called atmospheric yield function. This yield function includes the secondary particles produced in the atmosphere, as well as inside the particular detector. In this paper the primary focus is to recalculate the yield function for neutron monitors. The motivation for this study is that the quality of the experimental observations has increased to such an extent that it has become possible to reduce uncertainties in the yield function down to approximately 10%. It thus becomes possible to refine our knowledge of the atmospheric cascade process considerably. We parameterize the yield functions in a simple way; we also make reference to the yield and response functions of muon, Cherenkov and stratospheric balloon detectors, and we compare their response to that of the neutron monitors. Key Points A parameterization of the neutron monitor yield, spectrum and response is shown The response functions in the atmosphere for different detectors are compared The neutron monitor response to solar energetic particle events is shown
Journal Article
Transitions of foliar mycobiota community and transcriptome in response to pathogenic conifer needle interactions
2022
Profiling the host–mycobiota interactions in healthy vs. diseased forest ecosystems helps understand the dynamics of understudied yet increasingly important threats to forest health that are emerging due to climate change. We analyzed the structural and functional changes of the mycobiota and the responses of
Pinus contorta
in the Lophodermella needle cast pathosystem through metabarcoding and metatranscriptomics. When needles transitioned from asymptomatic to symptomatic, dysbiosis of the mycobiota occurred, but with an enrichment of
Lophodermella
pathogens. Many pathogenicity-related genes were highly expressed by the mycobiota at the necrotrophic phase, showing an active pathogen response that are absent in asymptomatic needles. This study also revealed that
Lophodermella
spp. are members of a healthy needle mycobiota that have latent lifestyles suggesting that other pine needle pathogens may have similar biology. Interestingly,
Pinus contorta
upregulated defense genes in healthy needles, indicating response to fungal recognition, while a variety of biotic and abiotic stresses genes were activated in diseased needles. Further investigation to elucidate the possible antagonistic interplay of other biotic members leading to disease progression and/or suppression is warranted. This study provides insights into microbial interactions in non-model pathosystems and contributes to the development of new forest management strategies against emerging latent pathogens.
Journal Article
Evolution of the large-scale atmospheric circulation in response to changing ice sheets over the last glacial cycle
by
Caballero, R.
,
Löfverström, M.
,
Nilsson, J.
in
Analysis
,
Atmospheric circulation
,
Greenhouse gases
2014
We present modelling results of the atmospheric circulation at the cold periods of marine isotope stage 5b (MIS 5b), MIS 4 and the Last Glacial Maximum (LGM), as well as the interglacial. The palaeosimulations are forced by ice-sheet reconstructions consistent with geological evidence and by appropriate insolation and greenhouse gas concentrations. The results suggest that the large-scale atmospheric winter circulation remained largely similar to the interglacial for a significant part of the glacial cycle. The proposed explanation is that the ice sheets were located in areas where their interaction with the mean flow is limited. However, the LGM Laurentide Ice Sheet induces a much larger planetary wave that leads to a zonalisation of the Atlantic jet. In summer, the ice-sheet topography dynamically induces warm temperatures in Alaska and central Asia that inhibits the expansion of the ice sheets into these regions. The warm temperatures may also serve as an explanation for westward propagation of the Eurasian Ice Sheet from MIS 4 to the LGM.
Journal Article
Increasing stomatal conductance in response to rising atmospheric CO2
2018
Studies have indicated that plant stomatal conductance (gs) decreases in response to elevated atmospheric CO2, a phenomenon of significance for the global hydrological cycle. However, gs increases across certain CO2 ranges have been predicted by optimization models. The aim of this work was to demonstrate that under certain environmental conditions, gs can increase in response to elevated CO2.
Using (1) an extensive, up-to-date synthesis of gs responses in free air CO2 enrichment (FACE)experiments, (2) in situ measurements across four biomes showing dynamic gs responses to a CO2 rise of ~50 ppm (characterizing the change in this greenhouse gas over the past three decades) and (3) a photosynthesis-stomatal conductance model, it is demonstrated that gs can in some cases increase in response to increasing atmospheric CO2.
Field observations are corroborated by an extensive synthesis of gs responses in FACE experiments showing that 11.8 % of gs responses under experimentally elevated CO2 are positive. They are further supported by a strong data-model fit (r2 = 0.607) using a stomatal optimization model applied to the field gs dataset. A parameter space identified in the Farquhar-Ball-Berry photosynthesis-stomatal conductance model confirms field observations of increasing gs under elevated CO2 in hot dry conditions. Contrary to the general assumption, positive gs responses to elevated CO2, although relatively rare, are a feature of woody taxa adapted to warm, low-humidity conditions, and this response is also demonstrated in global simulations using the Community Land Model (CLM4).
The results contradict the over-simplistic notion that global vegetation always responds with decreasing gs to elevated CO2, a finding that has important implications for predicting future vegetation feedbacks on the hydrological cycle at the regional level.
Journal Article
Population genomic analysis of an emerging pathogen Lonsdalea quercina affecting various species of oaks in western North America
2023
Understanding processes leading to disease emergence is important for effective disease management and prevention of future epidemics. Utilizing whole genome sequencing, we studied the phylogenetic relationship and diversity of two populations of the bacterial oak pathogen
Lonsdalea quercina
from western North America (Colorado and California) and compared these populations to other
Lonsdalea
species found worldwide. Phylogenetic analysis separated Colorado and California populations into two
Lonsdalea
clades, with genetic divergence near species boundaries, suggesting long isolation and populations that differ in genetic structure and distribution and possibly their polyphyletic origin. Genotypes collected from different host species and habitats were randomly distributed within the California cluster. Most Colorado isolates from introduced planted trees, however, were distinct from three isolates collected from a natural stand of Colorado native
Quercus gambelii
, indicating cryptic population structure. The California identical core genotypes distribution varied, while Colorado identical core genotypes were always collected from neighboring trees. Despite its recent emergence, the Colorado population had higher nucleotide diversity, possibly due to its long presence in Colorado or due to migrants moving with nursery stock. Overall, results suggest independent pathogen emergence in two states likely driven by changes in host-microbe interactions due to ecosystems changes. Further studies are warranted to understand evolutionary relationships among
L. quercina
from different areas, including the red oak native habitat in northeastern USA.
Journal Article
Diverse polarization angle swings from a repeating fast radio burst source
2020
Fast radio bursts (FRBs) are millisecond-duration radio transients
1
,
2
of unknown origin. Two possible mechanisms that could generate extremely coherent emission from FRBs invoke neutron star magnetospheres
3
–
5
or relativistic shocks far from the central energy source
6
–
8
. Detailed polarization observations may help us to understand the emission mechanism. However, the available FRB polarization data have been perplexing, because they show a host of polarimetric properties, including either a constant polarization angle during each burst for some repeaters
9
,
10
or variable polarization angles in some other apparently one-off events
11
,
12
. Here we report observations of 15 bursts from FRB 180301 and find various polarization angle swings in seven of them. The diversity of the polarization angle features of these bursts is consistent with a magnetospheric origin of the radio emission, and disfavours the radiation models invoking relativistic shocks.
Polarization observations of the fast radio burst FRB 180301 with the FAST radio telescope show diverse polarization angle swings, consistent with a magnetospheric origin of the emission.
Journal Article
Pre-LGM Northern Hemisphere ice sheet topography
2013
We here reconstruct the paleotopography of Northern Hemisphere ice sheets during the glacial maxima of marine isotope stages (MIS) 5b and 4.We employ a combined approach, blending geologically based reconstruction and numerical modeling, to arrive at probable ice sheet extents and topographies for each of these two time slices. For a physically based 3-D calculation based on geologically derived 2-D constraints, we use the University of Maine Ice Sheet Model (UMISM) to calculate ice sheet thickness and topography. The approach and ice sheet modeling strategy is designed to provide robust data sets of sufficient resolution for atmospheric circulation experiments for these previously elusive time periods. Two tunable parameters, a temperature scaling function applied to a spliced Vostok–GRIP record, and spatial adjustment of the climatic pole position, were employed iteratively to achieve a good fit to geological constraints where such were available. The model credibly reproduces the first-order pattern of size and location of geologically indicated ice sheets during marine isotope stages (MIS) 5b (86.2 kyr model age) and 4 (64 kyr model age). From the interglacial state of two north–south obstacles to atmospheric circulation (Rocky Mountains and Greenland), by MIS 5b the emergence of combined Quebec–central Arctic and Scandinavian–Barents-Kara ice sheets had increased the number of such highland obstacles to four. The number of major ice sheets remained constant through MIS 4, but the merging of the Cordilleran and the proto-Laurentide Ice Sheet produced a single continent-wide North American ice sheet at the LGM.
Journal Article