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result(s) for
"Cademartiri, Ludovico"
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Hydrogel-based transparent soils for root phenotyping in vivo
Root phenotypes are increasingly explored as predictors of crop performance but are still challenging to characterize. Media that mimic field conditions (e.g., soil, sand) are opaque to most forms of radiation, while transparent media do not provide field-relevant growing conditions and phenotypes. We describe here a “transparent soil” formed by the spherification of hydrogels of biopolymers. It is specifically designed to support root growth in the presence of air, water, and nutrients, and allows the time-resolved phenotyping of roots in vivo by both photography and microscopy. The roots developed by soybean plants in this medium are significantly more similar to those developed in real soil than those developed in hydroponic conditions and do not show signs of hypoxia. Lastly, we show that the granular nature and tunable properties of these hydrogel beads can be leveraged to investigate the response of roots to gradients in water availability and soil stiffness.
Journal Article
Sustainable scalable synthesis of sulfide nanocrystals at low cost with an ionic liquid sulfur precursor
Increasing the sustainability of nanocrystals is crucial to their application and the protection of the environment. Sulfur precursors for their synthesis are commonly obtained through multiple steps from H
2
S, only to be converted back to H
2
S during the synthesis of the nanocrystals. This convoluted process requires energy, reduces yields, increases waste and auxiliaries, and complicates recycling. Using H
2
S directly could drastically improve sustainability, but is prevented by toxicity and handling. We here show that H
2
S is stabilized by reaction with oleylamine (the most common and versatile ligand in nanoparticle synthesis) to form an ionic liquid precursor that addresses all major principles of green chemistry: it is made in one exothermic step, it leaves the reaction yielding a safer product and allowing the separate recycling of the precursors, and it produces high quality nanocrystals with high yields (sulfur yield > 70%) and concentrations (90 g L
−1
) in ambient conditions.
Developing sustainable and scalable nanocrystal syntheses is challenging but necessary for future technologies and the environment. Here, the authors show that using an ionic liquid to stabilize a highly reactive precursor can fulfill the major aims of sustainable nanocrystal synthesis, including high yields, energy efficiency, atom economy, and recyclability.
Journal Article
Evidence for root adaptation to a spatially discontinuous water availability in the absence of external water potential gradients
We hereby show that root systems adapt to a spatially discontinuous pattern of water availability even when the gradients of water potential across them are vanishingly small. A paper microfluidic approach allowed us to expose the entire root system of Brassica rapa plants to a square array of water sources, separated by dry areas. Gradients in the concentration of water vapor across the root system were as small as 10−4·mM·m−1 (∼4 orders of magnitude smaller than in conventional hydrotropism assays). Despite such minuscule gradients (which greatly limit the possible influence of the well-understood gradient-driven hydrotropic response), our results show that 1) individual roots as well as the root system as a whole adapt to the pattern of water availability to maximize access to water, and that 2) this adaptation increases as water sources become more rare. These results suggest that either plant roots are more sensitive to water gradients than human made water sensors by 3–5 orders of magnitude, or they might have developed, like other organisms, mechanisms for water foraging that allow them to find water in the absence of an external gradient in water potential.
Journal Article
Calcination does not remove all carbon from colloidal nanocrystal assemblies
Removing organics from hybrid nanostructures is a crucial step in many bottom-up materials fabrication approaches. It is usually assumed that calcination is an effective solution to this problem, especially for thin films. This assumption has led to its application in thousands of papers. We here show that this general assumption is incorrect by using a relevant and highly controlled model system consisting of thin films of ligand-capped ZrO
2
nanocrystals. After calcination at 800 °C for 12 h, while Raman spectroscopy fails to detect the ligands after calcination, elastic backscattering spectrometry characterization demonstrates that ~18% of the original carbon atoms are still present in the film. By comparison plasma processing successfully removes the ligands. Our growth kinetic analysis shows that the calcined materials have significantly different interfacial properties than the plasma-processed counterparts. Calcination is not a reliable strategy for the production of single-phase all-inorganic materials from colloidal nanoparticles.
Synthesis of all-inorganic nanomaterials often relies on organic templates, which are assumed to then be fully removed by calcination. Here, the authors use elastic backscattering spectroscopy to challenge this assumption, finding that calcination leaves behind considerable carbon content that can severely affect material function.
Journal Article
Using shape for self-assembly
A 1980 poem by Alan Mackay outlines his aspiration 'to see what all have seen but think what none have thought': a daunting task, which he accomplished not once, but several times. A 'truly myriadminded, manysided man-a veritable triacontahedron' in the words of his colleagues and friends, Alan Mackay pursued a lifelong interest in the problems of morphogenesis and form, a comprehension of which necessitated him crisscrossing the borders of the inanimate and animate world of soft and hard materials, through the integration of concepts and methods of chemistry, physics, mathematics and biology. In other words, he realized in his time a genuinely interdisciplinary approach to complex problems that still to this day remains beyond much of the academic community. Being invited to contribute a paper on the theme 'beyond crystals', we naturally wondered how Alan Mackay would think about the world of nanoscale self-assembly where so much depends on shape and form.
Journal Article
Stress response to CO2 deprivation by Arabidopsis thaliana in plant cultures
After being the standard plant propagation protocol for decades, cultures of Arabidopsis thaliana sealed with Parafilm remain common today out of practicality, habit, or necessity (as in co-cultures with microorganisms). Regardless of concerns over the aeration of these cultures, no investigation has explored the CO2 transport inside these cultures and its effect on the plants. Thereby, it was impossible to assess whether Parafilm-seals used today or in thousands of older papers in the literature constitute a treatment, and whether this treatment could potentially affect the study of other treatments.For the first time we report the CO2 concentrations in Parafilm-sealed cultures of A. thaliana with a 1 minute temporal resolution, and the transcriptome comparison with aerated cultures. The data show significant CO2 deprivation to the plants, a drastic suppression of photosynthesis, respiration, starch accumulation, chlorophyll biosynthesis, and an increased accumulation of reactive oxygen species. Most importantly, CO2 deprivation occurs as soon as the cotyledons emerge. Gene expression analysis indicates a significant alteration of 35% of the pathways when compared to aerated cultures, especially in stress response and secondary metabolism processes. On the other hand, the observed increase in the production of glucosinolates and flavonoids suggests intriguing possibilities for CO2 deprivation as an organic biofortification treatment in high-value crops.
Journal Article
LEGO® Bricks as Building Blocks for Centimeter-Scale Biological Environments: The Case of Plants
LEGO bricks are commercially available interlocking pieces of plastic that are conventionally used as toys. We describe their use to build engineered environments for cm-scale biological systems, in particular plant roots. Specifically, we take advantage of the unique modularity of these building blocks to create inexpensive, transparent, reconfigurable, and highly scalable environments for plant growth in which structural obstacles and chemical gradients can be precisely engineered to mimic soil.
Journal Article
Plant Growth Environments with Programmable Relative Humidity and Homogeneous Nutrient Availability
We describe the design, characterization, and use of \"programmable\", sterile growth environments for individual (or small sets of) plants. The specific relative humidities and nutrient availability experienced by the plant is established (RH between 15% and 95%; nutrient concentration as desired) during the setup of the growth environment, which takes about 5 minutes and <1$ in disposable cost. These systems maintain these environmental parameters constant for at least 14 days with minimal intervention (one minute every two days). The design is composed entirely of off-the-shelf components (e.g., LEGO® bricks) and is characterized by (i) a separation of root and shoot environment (which is physiologically relevant and facilitates imposing specific conditions on the root system, e.g., darkness), (ii) the development of the root system on a flat surface, where the root enjoys constant contact with nutrient solution and air, (iii) a compatibility with root phenotyping. We demonstrate phenotyping by characterizing root systems of Brassica rapa plants growing in different relative humidities (55%, 75%, and 95%). While most phenotypes were found to be sensitive to these environmental changes, a phenotype tightly associated with root system topology-the size distribution of the areas encircled by roots-appeared to be remarkably and counterintuitively insensitive to humidity changes. These setups combine many of the advantages of hydroponics conditions (e.g., root phenotyping, complete control over nutrient composition, scalability) and soil conditions (e.g., aeration of roots, shading of roots), while being comparable in cost and setup time to Magenta® boxes.
Journal Article
Emerging strategies for the synthesis of highly monodisperse colloidal nanostructures
This short perspective describes recent developments in the synthesis of nanoscale colloids from sparingly soluble precursors. These strategies, which we dubbed 'heterogeneous nanocrystal syntheses' owing to the presence of a precursor in a non-colloidal solid state, have demonstrated the ability to generate new colloidal shapes, a superior monodispersity and a remarkable ability to delay the onset of Ostwald ripening, when compared with more traditional and purely colloidal strategies. We review the key contributions to this emerging area of research and discuss in detail the remarkable number of differences between these syntheses and the widely used homogeneous organometallic syntheses for making nanoscale colloids.
Journal Article