Explore the vast range of titles available.

Background and aimsNeutralization of adverse environmental effects of agriculture intensification to sustain population growth, requires ecologically sound alternatives for plant growth. We used as biostimulants towards germination of basil seeds and early growth of maize, two different humic materials: a potassium humate from leonardite (KH), and compost tea (CT) from a green compost made of coffee husks, and a 1:1 combination of the two (MIX). After their thorough chemical, molecular and conformational characterization, a relation between structure and bioactivity was investigated.ResultsCT showed the largest bioactivity on either seed germination or maize plantlets growth due to its great content of polar bioactive molecules including oxidized lignin fragment, saccharides and peptides. The more hydrophobic KH, rich of alkyl and aromatic moieties, also exerted a significant bioactivity on maize, though to a lesser extent. The application of MIX to hydroponically grown maize plantlets showed a smaller bioactivity of polar CT molecules due to their entrapment into new suprastructures stabilized by hydrogen bonds formed with complementary functions of KH hydrophobic components. However, while the KH hydrophobicity in MIX ensured adhesion to roots, its conformational flexibility was still sufficient to provide a greater bioactivity than control, by releasing bioactive CT components capable to enhance both biomass yield and root elongation.ConclusionsOur study suggests that a combination of humic materials with diverse and well-characterized molecular properties may become a new tool to produce innovative and ecologically viable plant growth promoters, whose bioactivity may be modulated.

Background In the last few years, considerable attention has been focused on the plastic-degrading capability of insects and their gut microbiota in order to develop novel, effective, and green strategies for plastic waste management. Although many analyses based on 16S rRNA gene sequencing are available, an in-depth analysis of the insect gut microbiome to identify genes with plastic-degrading potential is still lacking. Results In the present work, we aim to fill this gap using Black Soldier Fly (BSF) as insect model. BSF larvae have proven capability to efficiently bioconvert a wide variety of organic wastes but, surprisingly, have never been considered for plastic degradation. BSF larvae were reared on two widely used plastic polymers and shotgun metagenomics was exploited to evaluate if and how plastic-containing diets affect composition and functions of the gut microbial community. The high-definition picture of the BSF gut microbiome gave access for the first time to the genomes of culturable and unculturable microorganisms in the gut of insects reared on plastics and revealed that (i) plastics significantly shaped bacterial composition at species and strain level, and (ii) functions that trigger the degradation of the polymer chains, i.e., DyP-type peroxidases, multicopper oxidases, and alkane monooxygenases, were highly enriched in the metagenomes upon exposure to plastics, consistently with the evidences obtained by scanning electron microscopy and 1 H nuclear magnetic resonance analyses on plastics. Conclusions In addition to highlighting that the astonishing plasticity of the microbiota composition of BSF larvae is associated with functional shifts in the insect microbiome, the present work sets the stage for exploiting BSF larvae as “bioincubators” to isolate microbial strains and enzymes for the development of innovative plastic biodegradation strategies. However, most importantly, the larvae constitute a source of enzymes to be evolved and valorized by pioneering synthetic biology approaches. 5errh-AhYWWkX5YWmGozvJ Video Abstract

BackgroundTo establish bioplastics as a real alternative to conventional plastics, high production costs must be constrained by using different kinds of wastewater streams as organic substrates and novel microbial strains as material-accumulating bacteria with high performance. Volatile fatty acids (VFAs) from the effluent of dairy wastewater biodigestion represent a new and inexpensive feedstock, which was used in this study for biopolymer production through microbial processes.ResultsCupriavidus necator DSM 13513 was particularly able to accumulate PHAs when operating in fed-batch mode by limiting the oxygen level together with intermittent feeding of a carbon source; maximum poly-β-hydroxybutyrate (PHB) accumulation was achieved in 48 h without compromising microbial growth. The complex VFAs mixture from the digestate did not influence PHA homopolymer accumulation. In fact, structural characterization by NMR analysis revealed PHB synthesis by C. necator DSM 13513 grown with different VFAs mixtures. Moreover, the bioplastic disk obtained from C. necator DSM 13513 cells grown on VFAs from digested dairy wastewater effluent presented good thermic properties and low affinity to water.ConclusionsOverall, the results make digested dairy wastewater effluent suitable for PHB production for specific biobased industrial applications.

Biochar may represent a sustainable and eco-friendly strategy to recycle agroforestry wastes, sequester carbon and improve soil health. With the aim of proving these benefits in a real scenario, we treated several soil parcels with 0 (CTRL), 1 (LOW) and 3 (HIGH) kg/m2 of wood biochar, in open-field trials. The heterotrophic soil respiration (SR) was monitored continuously for two months via a Closed Dynamic Chamber (CDC) associated with an innovative pilot system, and the most important soil chemical parameters were measured 9 and 54 days after biochar application. Biochar induced an immediate dose-dependent increase in organic matter content and CEC (up to 41.6% and 36.8% more than CTRL, respectively), which tended to slightly and gradually decrease after 54 days. In all cases, biochar induced a more pronounced SR, although the most enhanced microbial response was detected for the LOW parcel (19.3% higher than CTRL). Fennels were grown in treated soils and only LOW microplots gave a significantly better response (weight and size). Finally, NMR, FT-IR and Pyr-GC/MS analyses of LOW SOM extracts revealed a relevant impact on the composition, which was accompanied by a higher content of carbohydrates, indole-based compounds and FAME species correlating with enhanced microbial activity. Our findings demonstrate that the proper biochar dose improves soil fertility by creating an environment favorable to plants and promoting microbial activity.

The application of biochar as a soil amendment has garnered significant interest due to its potential to enhance soil fertility, promote plant growth, and contribute to sustainable agriculture. This study investigated how the structural and morphological characteristics of artisanal biochars from four different brands (AB1, AB2, AB3, and AB4), purchased in supermarkets, influence the development of rice plants in sandy soil. Spectroscopic analyses demonstrated that AB4 exhibited the highest aromaticity (77%), ensuring structural stability, whereas AB2 displayed greater aliphaticity (47%). Morphological characterization revealed that AB4 preserved the cellular structure of the original biomass. The biochar studied and the doses influenced the parameters evaluated in the development of rice plants in sandy soil differently. The biochar with the highest aromatic structure (AB4) promoted an increase in root area, length, and number of bifurcations, as well as in dry and fresh biomass. The nutrient accumulation in the aerial part of the rice plants was greater with the application of AB1 and AB2 at the dose of 10 t ha−1. Chlorophyll fluorescence analysis indicated improved photosynthetic performance in the AB4 treatment, mitigating initial plant stress and optimizing energy use. This study underscores the potential of artisanal biochar to enhance crop productivity and foster sustainable agricultural practices.

Waste biomass coming from a local coffee company, which supplied burnt ground coffee after an incorrect roasting process, was employed as a starting material in the composting plant of the Experimental Station of the University of Naples Federico II at Castel Volturno (CE). The direct molecular characterization of compost using 13C-NMR spectra, which was acquired through cross-polarization magic-angle spinning, showed a hydrophobicity index of 2.7% and an alkyl/hydroxyalkyl index of 0.7%. Compost samples that were collected during the early “active thermophilic phase” (when the composting temperature was 63 °C) were analyzed for the prokaryotic community composition and activities. Two complementary approaches, i.e., genomic and predictive metabolic analysis of the 16S rRNA V3–V4 amplicon and culture-dependent analysis, were combined to identify the main microbial factors that characterized the composting process. The whole microbial community was dominated by Firmicutes. The predictive analysis of the metabolic functionality of the community highlighted the potential degradation of peptidoglycan and the ability of metal chelation, with both functions being extremely useful for the revitalization and fertilization of agricultural soils. Finally, three biotechnologically relevant Firmicutes members, i.e., Geobacillus thermodenitrificans subsp. calidus, Aeribacillus pallidus, and Ureibacillus terrenus (strains CAF1, CAF2, and CAF5, respectively) were isolated from the “active thermophilic phase” of the coffee composting. All strains were thermophiles growing at the optimal temperature of 60 °C. Our findings contribute to the current knowledge on thermophilic composting microbiology and valorize burnt ground coffee as waste material with biotechnological potentialities.

BackgroundThe management of the organic waste recycling process determines the interest in the thermophiles microorganisms involved in composting. Although many microbial enzymes have been isolated and studied for their industrial and commercial uses, there is still a continuous search for microorganisms which could synthesize industrially feasible enzymes, especially when the microbial diversity of cow dung itself makes a potential source of biotechnological enzymes.ResultsThe composting process studied at the Experimental Station of the University of Naples Federico II (Castel Volturno, Caserta, Italy) was characterized by fresh saw dust 40%, bovine manure 58%, and 2% mature compost as raw organic substrates, and its thermophilic phase exceeded a temperature of 55 °C for at least 5 days, thus achieving sanitation. Six microbial strains were isolated and designated as follow: CV1-1, CV1-2, CV2-1, CV2-2, CV2-3 and CV2-4. Based on 16S rRNA gene sequence, HRMAS–NMR spectroscopy, and biochemical investigations, they were ascribed to the genera Geobacillus and Bacillus. All the microbial isolates were qualitatively screened on plates for the presence of hydrolytic activities, and they were quantitatively screened in liquid for glycoside hydrolase enzymes in the extracellular, cell-bound, and cytosolic fractions. Based on these results, strains CV2-1 and CV2-3 were also quantitatively screened for the presence of cellulase and pectinase activities, and pH and temperature optimum plus thermostability of cellulase from CV2-1 were analyzed.ConclusionsThe isolation and the identification of these thermophilic microorganisms such as Geobacillus toebii, Geobacillus galactosidasius, Bacillus composti, Bacillus thermophilus and Aeribacillus composti have allowed the study of the biodiversity of compost, with emphasis on their primary metabolome through an innovative and underutilized technique, that is HRMAS–NMR, also highlighting it as a novel approach to bacterial cell analysis. Subsequently, this study has permitted the identification of enzymatic activities able to degrade cellulose and other polymeric substrates, such as the one investigated from strain CV2-1, which could be interesting from an industrial and a biotechnological point of view, furthermore, increasing the knowledge for potential applicability in different industrial fields as an efficient and environmentally friendly technique.

Intensive agriculture maintains high crop yields through chemical inputs, which are well known for their adverse effects on environmental quality and human health. Innovative technologies are required to reduce the risk generated by the extensive and harmful use of pesticides. The plant biostimulants made from humic substances isolated from recyclable biomass offer an alternative approach to address the need for replacing conventional agrochemicals without compromising the crop yield. The stimulatory effects of humic substances are commonly associated with plant hormones, particularly auxins. However, jasmonic acid (JA) is crucial metabolite in mediating the defence responses and governing plant growth and development. This work aimed to evaluate the changes in the biosynthesis and signalling pathway of JA in tomato seedlings treated with humic acids (HA) isolated from vermicompost. We use the tomato model system cultivar Micro-Tom (MT) harbouring a reporter gene fused to a synthetic promoter that responds to jasmonic acid (JERE::GUS). The transcript levels of genes involved in JA generation and activity were also determined using qRT-PCR. The application of HA promoted plant growth and altered the JA status, as revealed by both GUS and qRT-PCR assays. Both JA enzymatic synthesis (LOX, OPR3) and JA signalling genes (JAZ and JAR) were found in higher transcription levels in plants treated with HA. In addition, ethylene (ETR4) and auxin (ARF6) signalling components were positively modulated by HA, revealing a hormonal cross-talk. Our results prove that the plant defence system linked to JA can be emulated by HA application without growth inhibition.

Humic substances play empirically several essential functions in biogeochemical cycles such as storage of carbon, pollutants, nutrients and water, yet the underlying mechanisms remain poorly known because their precise molecular structure is largely unknown so far. Here, we extracted humic substances from biomass waste of bell pepper, fennel, artichoke, coffee ground, coffee husks, and nursery residues. We analyzed humic extracts by ultra-high resolution Orbitrap Fusion Lumos Tribrid 1 M mass spectrometry, using both positive photoionization and negative electrospray ionization modes, and by 13 C cross polarization/magic angle spinning nuclear magnetic resonance spectroscopy. We identified 5000–7000 unique organic compounds in humic substances by integrating photoionization with electrospray ionization. The chemical distribution of all components was depicted by nuclear magnetic resonance. Humic substances from green composts are composed by a wide variety of hydrophilic and hydrophobic moieties, thus providing the required biosurfactant properties for effective soil washing capacities, with carboxyl-rich alicyclic molecules, fatty acids, and phenolic acids as major constituents. Overall, our findings provide a major insight in the molecular structure of humic substances, thus opening research on mechanisms ruling the origin, fate and behavior of humic substances.