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"Chen, Jianjun"
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The roles and implications of RNA m6A modification in cancer
2023
N6-Methyladenosine (m6A), the most prevalent internal modification in eukaryotic mRNA, has been extensively and increasingly studied over the past decade. Dysregulation of RNA m6A modification and its associated machinery, including writers, erasers and readers, is frequently observed in various cancer types, and the dysregulation profiles might serve as diagnostic, prognostic and/or predictive biomarkers. Dysregulated m6A modifiers have been shown to function as oncoproteins or tumour suppressors with essential roles in cancer initiation, progression, metastasis, metabolism, therapy resistance and immune evasion as well as in cancer stem cell self-renewal and the tumour microenvironment, highlighting the therapeutic potential of targeting the dysregulated m6A machinery for cancer treatment. In this Review, we discuss the mechanisms by which m6A modifiers determine the fate of target RNAs and thereby influence protein expression, molecular pathways and cell phenotypes. We also describe the state-of-the-art methodologies for mapping global m6A epitranscriptomes in cancer. We further summarize discoveries regarding the dysregulation of m6A modifiers and modifications in cancer, their pathological roles, and the underlying molecular mechanisms. Finally, we discuss m6A-related prognostic and predictive molecular biomarkers in cancer as well as the development of small-molecule inhibitors targeting oncogenic m6A modifiers and their activity in preclinical models.Dysregulation of N6-methyladenosine (m6A), the most prevalent internal modification in eukaryotic mRNA, is common in various cancer types. The authors of this Review provide an overview of the mechanisms of m6A-dependent RNA regulation, summarize current knowledge of their pathological effects and potential utility as biomarkers in cancer, and describe ongoing efforts to develop small-molecule inhibitors of oncogenic m6A modifiers.
Journal Article
Cobalt: An Essential Micronutrient for Plant Growth?
2021
Cobalt is a transition metal located in the fourth row of the periodic table and is a neighbor of iron and nickel. It has been considered an essential element for prokaryotes, human beings, and other mammals, but its essentiality for plants remains obscure. In this article, we proposed that cobalt (Co) is a potentially essential micronutrient of plants. Co is essential for the growth of many lower plants, such as marine algal species including diatoms, chrysophytes, and dinoflagellates, as well as for higher plants in the family Fabaceae or Leguminosae . The essentiality to leguminous plants is attributed to its role in nitrogen (N) fixation by symbiotic microbes, primarily rhizobia. Co is an integral component of cobalamin or vitamin B 12 , which is required by several enzymes involved in N 2 fixation. In addition to symbiosis, a group of N 2 fixing bacteria known as diazotrophs is able to situate in plant tissue as endophytes or closely associated with roots of plants including economically important crops, such as barley, corn, rice, sugarcane, and wheat. Their action in N 2 fixation provides crops with the macronutrient of N. Co is a component of several enzymes and proteins, participating in plant metabolism. Plants may exhibit Co deficiency if there is a severe limitation in Co supply. Conversely, Co is toxic to plants at higher concentrations. High levels of Co result in pale-colored leaves, discolored veins, and the loss of leaves and can also cause iron deficiency in plants. It is anticipated that with the advance of omics, Co as a constitute of enzymes and proteins and its specific role in plant metabolism will be exclusively revealed. The confirmation of Co as an essential micronutrient will enrich our understanding of plant mineral nutrition and improve our practice in crop production.
Journal Article
Allelopathy and its application as a weed management tool: A review
by
Khamare, Yuvraj
,
Chen, Jianjun
,
Marble, Stephen Christopher
in
Agricultural practices
,
Agricultural production
,
Agriculture
2022
Weeds are a serious threat to crop production as they interfere with the crop growth and development and result in significant crop losses. Weeds actually cause yield loss higher than any other pest in crop production. As a result, synthetic herbicides have been widely used for weed management. Heavy usage of synthetic herbicides, however, has resulted in public concerns over the impact of herbicides on human health and the environment. Due to various environmental and health issues associated with synthetic herbicides, researchers have been exploring alternative environmentally friendly means of controlling weed. Among them, incorporating allelopathy as a tool in an integrated weed management plan could meaningfully bring down herbicide application. Allelopathy is a biological phenomenon of chemical interaction between plants, and this phenomenon has great potential to be used as an effective and environmentally friendly tool for weed management in field crops. In field crops, allelopathy can be applied through intercropping, crop rotation, cover crops, mulching and allelopathic water extracts to manage weeds. Accumulating evidence indicates that some plant species possess potent allelochemicals that have great potential to be the ecofriendly natural herbicides. This review is intended to provide an overview of several allelopathic species that release some form of the potent allelochemical with the potential of being used in conventional or organic agriculture. Further, the review also highlights potential ways allelopathy could be utilized in conventional or organic agriculture and identify future research needs and prospects. It is anticipated that the phenomenon of allelopathy will be further explored as a weed management tool, and it can be a part of a sustainable, ecological, and integrated weed management system.
Journal Article
m6A RNA modifications are measured at single-base resolution across the mammalian transcriptome
2022
Functional studies of the RNA
N
6
-methyladenosine (m
6
A) modification have been limited by an inability to map individual m
6
A-modified sites in whole transcriptomes. To enable such studies, here, we introduce m
6
A-selective allyl chemical labeling and sequencing (m
6
A-SAC-seq), a method for quantitative, whole-transcriptome mapping of m
6
A at single-nucleotide resolution. The method requires only ~30 ng of poly(A) or rRNA-depleted RNA. We mapped m
6
A modification stoichiometries in RNA from cell lines and during in vitro monocytopoiesis from human hematopoietic stem and progenitor cells (HSPCs). We identified numerous cell-state-specific m
6
A sites whose methylation status was highly dynamic during cell differentiation. We observed changes of m
6
A stoichiometry as well as expression levels of transcripts encoding or regulated by key transcriptional factors (TFs) critical for HSPC differentiation. m
6
A-SAC-seq is a quantitative method to dissect the dynamics and functional roles of m
6
A sites in diverse biological processes using limited input RNA.
m
6
A-SAC-seq uses chemical labeling to quantify m
6
A at single-base resolution in the mammalian transcriptome.
Journal Article
Relationship between body mass index and physical fitness of children and adolescents in Xinjiang, China: a cross-sectional study
2022
Background
Xinjiang is an economically underdeveloped area in China, but the obesity rate of children and adolescents is increasing year by year. Physical fitness and body mass index (BMI) are very important factors for healthy development, whereas few studies focus on the relationship between them in this region. This study aimed to explore the relationship between physical fitness and BMI of children and adolescents aged 7 to 18 in Xinjiang.
Method
A total of 17,356 children and adolescents aged 7–18 years were involved. BMI was divided into five levels by percentiles, from very low to very high. Physical fitness was evaluated by five indicators: grip strength, standing long jump, sit-and-reach, 50 m dash, and endurance running. Single-factor analysis of variance was used to compare the Z-scores of the five physical fitness indicators among different BMI levels for the four age groups by gender. A nonlinear quadratic regression model was used to evaluate the relationship between BMI and each indicator in the four age groups.
Result
There is a significant correlation between the five health-related indicators (grip strength, standing long jump, sit and reach, 50 m dash, endurance run) at two age groups (13-15 yrs., 16-18 yrs) of children and adolescents in Xinjiang, China. The range of the Pearson coefficient is 0.048 ~ 0.744. For the other two age groups (7-9 yrs., 10-12 yrs.,) significant correlations are found only in some indicators, and the Pearson coefficient ranges from 0.002 to 0.589. The relationship between BMI and physical fitness presents an U-shaped or inverted U-shaped curve in most age groups(R
2
ranges from − 0.001 to 0.182. Children and adolescents with normal BMI score higher on physical fitness tests, and boys (R
2
ranges from − 0.001 to 0.182) are more pronounced than girls (R
2
ranges from 0.001 to 0.031).
Conclusion
Children and adolescents with a BMI above or below the normal ranges have lower physical fitness than those with normal BMI. BMI and physical fitness have an U-shaped or inverted U-shaped curve relationship, and the impact is more evident in boys than girls. Targeted actions such as improving the quality of physical education classes, advocating students to keep a balanced diet and physical exercise should be taken designedly.
Journal Article
Effects of graphene on seed germination and seedling growth
by
Chen, Jianjun
,
Gao, Bin
,
Li, Yuncong
in
Characterization and Evaluation of Materials
,
Chemistry and Materials Science
,
Environmental impact
2015
The environmental impact of graphene has recently attracted great attention. In this work, we show that graphene at a low concentration affected tomato seed germination and seedling growth. Graphene-treated seeds germinated much faster than control seeds. Analytical results indicated that graphene penetrated seed husks. The penetration might break the husks to facilitate water uptake, resulting in faster germination and higher germination rates. At the stage of seedling growth, graphene was also able to penetrate root tip cells. Seedlings germinated from graphene-treated seeds had slightly lower biomass accumulation than the control, but exhibited significantly longer stems and roots than the control, which suggests that graphene, in contrast with other nanoparticles, had different effects on seedling growth. Taken together, our results imply that graphene played complicated roles in affecting the initial stage of seed germination and subsequent seedling growth.
Journal Article
Reverse oxygen spillover triggered by CO adsorption on Sn-doped Pt/TiO2 for low-temperature CO oxidation
2023
The spillover of oxygen species is fundamentally important in redox reactions, but the spillover mechanism has been less understood compared to that of hydrogen spillover. Herein Sn is doped into TiO
2
to activate low-temperature (<100 °C) reverse oxygen spillover in Pt/TiO
2
catalyst, leading to CO oxidation activity much higher than that of most oxide-supported Pt catalysts. A combination of near-ambient-pressure X-ray photoelectron spectroscopy, in situ Raman/Infrared spectroscopies, and ab initio molecular dynamics simulations reveal that the reverse oxygen spillover is triggered by CO adsorption at Pt
2+
sites, followed by bond cleavage of Ti-O-Sn moieties nearby and the appearance of Pt
4+
species. The O in the catalytically indispensable Pt-O species is energetically more favourable to be originated from Ti-O-Sn. This work clearly depicts the interfacial chemistry of reverse oxygen spillover that is triggered by CO adsorption, and the understanding is helpful for the design of platinum/titania catalysts suitable for reactions of various reactants.
Reverse O spillover has opened new opportunities in improving the catalytic activity and selectivity in various reactions. Herein Sn is doped into TiO2 to activate low-temperature (<100 °C) reverse oxygen spillover in Pt/TiO2 catalyst, leading to enhanced CO oxidation activity.
Journal Article
The PTI to ETI Continuum in Phytophthora-Plant Interactions
by
Mubeen, Hira
,
Chen, Jianjun
,
Wei, Xiangying
in
Alternative splicing
,
Calcium signalling
,
Economic importance
2020
Phytophthora species are notorious pathogens of several economically important crop plants. Several general elicitors, commonly referred to as Pathogen-Associated Molecular Patterns (PAMPs), from Phytophthora spp. have been identified that are recognized by the plant receptors to trigger induced defense responses in a process termed PAMP-triggered Immunity (PTI). Adapted Phytophthora pathogens have evolved multiple strategies to evade PTI. They can either modify or suppress their elicitors to avoid recognition by host and modulate host defense responses by deploying hundreds of effectors, which suppress host defense and physiological processes by modulating components involved in calcium and MAPK signaling, alternative splicing, RNA interference, vesicle trafficking, cell-to-cell trafficking, proteolysis and phytohormone signaling pathways. In incompatible interactions, resistant host plants perceive effector-induced modulations through resistance proteins and activate downstream components of defense responses in a quicker and more robust manner called effector-triggered-immunity (ETI). When pathogens overcome PTI—usually through effectors in the absence of R proteins—effectors-triggered susceptibility (ETS) ensues. Qualitatively, many of the downstream defense responses overlap between PTI and ETI. In general, these multiple phases of Phytophthora- plant interactions follow the PTI-ETS-ETI paradigm, initially proposed in the zigzag model of plant immunity. However, based on several examples, in Phytophthora -plant interactions, boundaries between these phases are not distinct but are rather blended pointing to a PTI-ETI continuum.
Journal Article
Titanium as a Beneficial Element for Crop Production
by
Pan, Dongming
,
Chen, Jianjun
,
Wei, Xiangying
in
beneficial elements
,
Crop production
,
Crop yield
2017
Titanium (Ti) is considered a beneficial element for plant growth. Ti applied via roots or leaves at low concentrations has been documented to improve crop performance through stimulating the activity of certain enzymes, enhancing chlorophyll content and photosynthesis, promoting nutrient uptake, strengthening stress tolerance, and improving crop yield and quality. Commercial fertilizers containing Ti, such as Tytanit and Mg-Titanit, have been used as biostimulants for improving crop production; however, mechanisms underlying the beneficial effects still remain unclear. In this article, we propose that the beneficial roles Ti plays in plants lie in its interaction with other nutrient elements primarily iron (Fe). Fe and Ti have synergistic and antagonistic relationships. When plants experience Fe deficiency, Ti helps induce the expression of genes related to Fe acquisition, thereby enhancing Fe uptake and utilization and subsequently improving plant growth. Plants may have proteins that either specifically or nonspecifically bind with Ti. When Ti concentration is high in plants, Ti competes with Fe for ligands or proteins. The competition could be severe, resulting in Ti phytotoxicity. As a result, the beneficial effects of Ti become more pronounced during the time when plants experience low or deficient Fe supply.
Journal Article
Advances in redox-responsive drug delivery systems of tumor microenvironment
by
Cheng, Yuan
,
Zhao, Xiaotian
,
Chen, Jianjun
in
Animals
,
Antineoplastic Agents - administration & dosage
,
Antineoplastic Agents - pharmacology
2018
With the improvement of nanotechnology and nanomaterials, redox-responsive delivery systems have been studied extensively in some critical areas, especially in the field of biomedicine. The system constructed by redox-responsive delivery can be much stable when in circulation. In addition, redox-responsive vectors can respond to the high intracellular level of glutathione and release the loaded cargoes rapidly, only if they reach the site of tumor tissue or targeted cells. Moreover, redox-responsive delivery systems are often applied to significantly improve drug concentrations in targeted cells, increase the therapeutic efficiency and reduce side effects or toxicity of primary drugs. In this review, we focused on the structures and types of current redox-responsive delivery systems and provided a comprehensive overview of relevant researches, in which the disulfide bond containing delivery systems are of the utmost discussion.
Journal Article